Wall clock time and date at job start Tue Mar 31 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 N 1.46504 * 109.46872 * 184.53422 * 3 2 1 5 5 C 1.37090 * 120.00648 * 85.02899 * 4 3 2 6 6 H 1.07996 * 120.00401 * 198.38312 * 5 4 3 7 7 C 1.38951 * 119.99719 * 18.37713 * 5 4 3 8 8 N 1.31413 * 120.00165 * 35.75585 * 7 5 4 9 9 Si 1.86803 * 119.99818 * 215.75868 * 7 5 4 10 10 H 1.48506 * 109.47128 * 94.99744 * 9 7 5 11 11 H 1.48501 * 109.47102 * 214.99409 * 9 7 5 12 12 H 1.48497 * 109.47261 * 334.99504 * 9 7 5 13 13 C 1.34787 * 119.99487 * 265.02821 * 4 3 2 14 14 O 1.21286 * 119.99627 * 186.60798 * 13 4 3 15 15 C 1.50696 * 119.99893 * 6.60568 * 13 4 3 16 16 C 1.53048 * 109.45719 * 157.08307 * 15 13 4 17 17 C 1.53189 * 109.31227 * 181.38704 * 16 15 13 18 18 N 1.46934 * 108.77499 * 305.36387 * 17 16 15 19 19 S 1.65595 * 120.63151 * 233.33371 * 18 17 16 20 20 C 1.81405 * 104.44925 * 90.00105 * 19 18 17 21 21 O 1.42101 * 104.27966 * 206.06990 * 19 18 17 22 22 O 1.42096 * 104.27807 * 333.93105 * 19 18 17 23 23 C 1.46922 * 118.73597 * 53.60924 * 18 17 16 24 24 C 1.53032 * 109.46110 * 277.15049 * 15 13 4 25 25 H 1.09000 * 109.46765 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47021 * 300.00055 * 1 2 3 27 27 H 1.08996 * 109.47155 * 60.00090 * 1 2 3 28 28 H 1.08993 * 109.47120 * 239.99721 * 2 1 3 29 29 H 1.09004 * 109.47295 * 120.00218 * 2 1 3 30 30 H 1.08993 * 109.47464 * 64.53431 * 3 2 1 31 31 H 1.08999 * 109.46787 * 304.52266 * 3 2 1 32 32 H 0.96996 * 119.99872 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46397 * 37.11510 * 15 13 4 34 34 H 1.09001 * 109.49476 * 61.43321 * 16 15 13 35 35 H 1.08994 * 109.52208 * 301.35524 * 16 15 13 36 36 H 1.09003 * 109.58482 * 185.58143 * 17 16 15 37 37 H 1.08997 * 109.70871 * 65.22253 * 17 16 15 38 38 H 1.08999 * 109.46890 * 59.99736 * 20 19 18 39 39 H 1.08996 * 109.47057 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47051 * 299.99973 * 20 19 18 41 41 H 1.09008 * 109.58711 * 66.17906 * 23 18 17 42 42 H 1.09000 * 109.58800 * 186.60026 * 23 18 17 43 43 H 1.08999 * 109.50439 * 298.56615 * 24 15 13 44 44 H 1.09005 * 109.49987 * 58.67102 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5010 1.4439 -0.1092 5 6 4.0964 1.3729 -1.3420 6 1 5.1320 1.0780 -1.4254 7 6 3.3674 1.6802 -2.4843 8 7 2.4652 2.6351 -2.4510 9 14 3.6698 0.7358 -4.0674 10 1 2.6935 -0.3782 -4.1735 11 1 3.5070 1.6488 -5.2272 12 1 5.0492 0.1860 -4.0601 13 6 4.2597 1.5150 1.0026 14 8 5.4628 1.6370 0.9088 15 6 3.6132 1.4430 2.3619 16 6 4.6441 0.9772 3.3927 17 6 3.9748 0.8719 4.7666 18 7 3.3427 2.1596 5.0847 19 16 3.6783 2.9354 6.5087 20 6 5.1015 3.9923 6.1238 21 8 2.5237 3.7252 6.7581 22 8 4.0576 1.8918 7.3954 23 6 2.4025 2.7428 4.1181 24 6 3.0893 2.8271 2.7513 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.7446 1.9324 0.9277 31 1 1.6120 1.9791 -0.8467 32 1 1.9561 2.8493 -3.2483 33 1 2.7840 0.7361 2.3327 34 1 5.4615 1.6967 3.4404 35 1 5.0344 0.0018 3.1024 36 1 4.7252 0.6369 5.5215 37 1 3.2177 0.0880 4.7476 38 1 4.8311 4.6920 5.3331 39 1 5.3936 4.5472 7.0154 40 1 5.9347 3.3729 5.7916 41 1 1.5167 2.1119 4.0435 42 1 2.1152 3.7422 4.4450 43 1 3.9213 3.5292 2.8051 44 1 2.3725 3.1683 2.0044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:17 Heat of formation + Delta-G solvation = -103.761597 kcal Electronic energy + Delta-G solvation = -26531.613521 eV Core-core repulsion = 22804.379306 eV Total energy + Delta-G solvation = -3727.234215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48455 -37.46272 -37.26341 -36.04664 -35.35137 -32.89232 -32.09606 -31.31696 -30.92431 -29.59221 -26.23751 -25.37919 -23.93510 -23.21262 -21.15174 -20.52064 -19.17905 -18.57195 -17.60856 -16.95043 -16.40897 -16.25469 -16.15307 -14.85221 -14.63864 -14.55573 -14.24668 -14.11394 -13.81248 -13.54968 -13.37558 -13.29764 -13.22594 -13.09624 -12.47383 -12.30013 -12.21512 -12.18191 -11.84370 -11.73693 -11.54909 -11.39611 -11.24249 -11.12312 -11.04740 -10.87547 -10.65200 -10.46414 -10.36721 -10.27140 -10.13515 -9.83128 -9.07837 -9.03356 -8.30269 -7.63580 -6.43350 -3.83005 0.15240 2.50633 3.10677 3.24740 3.29463 3.74637 3.81139 4.01424 4.10182 4.49349 4.70858 4.72159 4.80258 4.89563 5.11036 5.24476 5.30370 5.31325 5.48965 5.52744 5.56031 5.63203 5.70173 5.77073 5.85456 5.88425 5.92671 6.08495 6.13083 6.22055 6.34339 6.37111 6.42538 6.49470 6.59797 6.63137 6.66402 6.94581 7.29083 7.60066 8.11928 8.47295 9.15572 9.42897 9.99391 10.56346 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.003663 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.758855 B = 7642.224066 C = 8037.802925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.079 3.921 4 N -0.436 5.436 5 C -0.315 4.315 6 H 0.100 0.900 7 C 0.041 3.959 8 N -0.849 5.849 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.449 3.551 14 O -0.589 6.589 15 C -0.097 4.097 16 C -0.113 4.113 17 C 0.123 3.877 18 N -0.997 5.997 19 S 2.612 3.388 20 C -0.674 4.674 21 O -0.959 6.959 22 O -0.960 6.960 23 C 0.124 3.876 24 C -0.127 4.127 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 -0.132 12.648 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.045 4.045 4 N -0.153 5.153 5 C -0.442 4.442 6 H 0.117 0.883 7 C -0.164 4.164 8 N -0.487 5.487 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.237 3.763 14 O -0.474 6.474 15 C -0.118 4.118 16 C -0.152 4.152 17 C -0.002 4.002 18 N -0.835 5.835 19 S 2.705 3.295 20 C -0.824 4.824 21 O -0.949 6.949 22 O -0.950 6.950 23 C -0.001 4.001 24 C -0.166 4.166 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.527 -0.069 13.264 13.503 hybrid contribution 0.493 -0.145 -1.439 1.528 sum -2.034 -0.214 11.826 12.001 Atomic orbital electron populations 1.21674 0.96437 1.00626 1.01491 1.21851 0.94754 0.99176 1.01562 1.22098 0.82394 0.95835 1.04164 1.43691 1.04591 1.61899 1.05085 1.19517 0.98800 1.44645 0.81282 0.88271 1.25058 0.97234 0.95071 0.99070 1.69968 1.25299 1.23169 1.30248 0.86297 0.79278 0.80219 0.81383 1.20342 1.21173 1.19264 1.20033 0.87566 0.83387 0.85271 1.90501 1.15017 1.54997 1.86900 1.21112 0.98758 0.97668 0.94307 1.21716 0.98022 1.02781 0.92723 1.21512 0.97243 0.84014 0.97478 1.57678 1.56190 1.31709 1.37941 1.04799 0.76285 0.75009 0.73378 1.30595 1.22376 1.17349 1.12079 1.93595 1.45480 1.72191 1.83676 1.93591 1.85108 1.53955 1.62345 1.21483 0.91352 0.99004 0.88234 1.21958 1.01204 0.97101 0.96322 0.93560 0.93246 0.92711 0.91685 0.93436 0.92892 0.85695 0.92161 0.89996 0.90739 0.90615 0.89309 0.90920 0.85263 0.85825 0.85245 0.90697 0.89163 0.91172 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.13 -2.38 6.14 -26.73 -0.16 -2.55 16 3 C 0.08 1.60 4.58 -4.04 -0.02 1.58 16 4 N -0.44 -10.36 2.62 -114.81 -0.30 -10.66 16 5 C -0.32 -8.41 9.13 -14.94 -0.14 -8.55 16 6 H 0.10 2.85 7.57 -52.49 -0.40 2.45 16 7 C 0.04 1.03 4.83 -17.47 -0.08 0.94 16 8 N -0.85 -21.58 11.13 55.50 0.62 -20.96 16 9 Si 0.90 19.79 29.67 -169.99 -5.04 14.74 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.45 10.16 6.75 -10.98 -0.07 10.09 16 14 O -0.59 -15.56 15.80 5.55 0.09 -15.48 16 15 C -0.10 -1.59 1.64 -91.73 -0.15 -1.74 16 16 C -0.11 -1.62 4.84 -26.61 -0.13 -1.75 16 17 C 0.12 1.40 6.31 -3.71 -0.02 1.38 16 18 N -1.00 -11.23 3.22 -113.51 -0.37 -11.59 16 19 S 2.61 28.00 6.05 -107.50 -0.65 27.35 16 20 C -0.67 -5.32 10.99 101.05 1.11 -4.21 16 21 O -0.96 -12.90 16.72 -57.54 -0.96 -13.87 16 22 O -0.96 -12.86 16.73 -57.54 -0.96 -13.83 16 23 C 0.12 1.43 6.31 -3.71 -0.02 1.40 16 24 C -0.13 -1.80 5.06 -26.61 -0.13 -1.94 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 0.78 7.16 -51.93 -0.37 0.41 16 30 H 0.05 0.94 4.64 -51.93 -0.24 0.70 16 31 H 0.13 2.85 4.99 -51.93 -0.26 2.59 16 32 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.08 1.26 6.23 -51.93 -0.32 0.94 16 34 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 0.90 7.11 -51.93 -0.37 0.53 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.09 0.93 7.10 -51.93 -0.37 0.56 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.26 6.27 -51.93 -0.33 0.93 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -33.46 356.64 -8.52 -41.98 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.85 Total: 4.00 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 0.54 Total: -7.07 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.05 Total: -43.22 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.84 Total: -43.17 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.04 Total: 14.74 kcal Atomic # 16 Polarization: 28.00 SS G_CDS: -0.65 Total: 27.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.46 -8.52 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.781 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds