Wall clock time and date at job start Tue Mar 31 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 S 1.81403 * 109.46953 * 180.02562 * 3 2 1 5 5 O 1.42102 * 110.54205 * 69.89209 * 4 3 2 6 6 O 1.42097 * 110.53807 * 293.13944 * 4 3 2 7 7 N 1.65599 * 104.44889 * 181.51409 * 4 3 2 8 8 C 1.47427 * 125.64612 * 84.01676 * 7 4 3 9 9 C 1.54914 * 104.83152 * 204.16224 * 8 7 4 10 10 C 1.55400 * 101.66679 * 323.07973 * 9 8 7 11 11 C 1.47018 * 125.65107 * 264.06166 * 7 4 3 12 12 H 1.09007 * 109.88413 * 59.33227 * 11 7 4 13 13 C 1.50700 * 109.88111 * 298.32146 * 11 7 4 14 14 O 1.21281 * 120.00243 * 332.94604 * 13 11 7 15 15 N 1.34777 * 119.99904 * 153.22150 * 13 11 7 16 16 C 1.46498 * 119.99873 * 179.72900 * 15 13 11 17 17 H 1.09004 * 109.47196 * 324.99218 * 16 15 13 18 18 C 1.52997 * 109.47576 * 84.99836 * 16 15 13 19 19 C 1.50705 * 109.46987 * 205.00109 * 16 15 13 20 20 H 1.08002 * 120.00151 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00116 * 180.02562 * 19 16 15 22 22 N 1.31515 * 119.99532 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 120.00232 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46843 * 89.99371 * 23 21 19 25 25 H 1.48493 * 109.47148 * 209.99517 * 23 21 19 26 26 H 1.48499 * 109.46918 * 330.00147 * 23 21 19 27 27 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47109 * 300.00204 * 1 2 3 29 29 H 1.08995 * 109.47333 * 60.00158 * 1 2 3 30 30 H 1.08998 * 109.46841 * 240.00029 * 2 1 3 31 31 H 1.09004 * 109.47089 * 119.99851 * 2 1 3 32 32 H 1.08994 * 109.47669 * 60.00046 * 3 2 1 33 33 H 1.09004 * 109.47061 * 299.99868 * 3 2 1 34 34 H 1.09002 * 110.36912 * 323.00097 * 8 7 4 35 35 H 1.09000 * 110.36588 * 85.33104 * 8 7 4 36 36 H 1.09003 * 110.99620 * 81.06633 * 9 8 7 37 37 H 1.08998 * 111.00392 * 204.87805 * 9 8 7 38 38 H 1.08994 * 110.69576 * 277.04467 * 10 9 8 39 39 H 1.09000 * 110.85312 * 153.69493 * 10 9 8 40 40 H 0.97001 * 120.00222 * 359.72396 * 15 13 11 41 41 H 1.08999 * 109.47074 * 300.00076 * 18 16 15 42 42 H 1.08999 * 109.46848 * 60.00001 * 18 16 15 43 43 H 1.09004 * 109.47565 * 180.02562 * 18 16 15 44 44 H 0.97005 * 119.99344 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3521 0.9852 -1.2506 6 8 4.3531 0.9194 1.2226 7 7 4.2673 3.0455 0.0417 8 6 4.3612 3.8767 1.2557 9 6 4.1533 5.3292 0.7588 10 6 4.8887 5.3015 -0.6098 11 6 4.6003 3.8757 -1.1250 12 1 3.7594 3.8952 -1.8184 13 6 5.8208 3.3236 -1.8154 14 8 6.6397 2.6895 -1.1843 15 7 6.0051 3.5391 -3.1330 16 6 7.1945 3.0074 -3.8028 17 1 8.0425 3.0415 -3.1188 18 6 6.9377 1.5594 -4.2250 19 6 7.4988 3.8397 -5.0218 20 1 6.8689 4.6804 -5.2726 21 6 8.5808 3.5274 -5.8173 22 7 9.3475 2.5034 -5.5120 23 14 8.9576 4.5586 -7.3286 24 1 9.8686 5.6702 -6.9548 25 1 9.6093 3.7091 -8.3575 26 1 7.6943 5.1164 -7.8747 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.5798 3.6027 1.9645 35 1 5.3446 3.7696 1.7135 36 1 3.0938 5.5488 0.6264 37 1 4.6165 6.0446 1.4383 38 1 5.9596 5.4535 -0.4748 39 1 4.4747 6.0477 -1.2879 40 1 5.3502 4.0462 -3.6378 41 1 6.7177 0.9575 -3.3434 42 1 6.0898 1.5254 -4.9091 43 1 7.8229 1.1637 -4.7230 44 1 10.1089 2.2838 -6.0716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:15 Heat of formation + Delta-G solvation = -112.364639 kcal Electronic energy + Delta-G solvation = -26244.118622 eV Core-core repulsion = 22516.511352 eV Total energy + Delta-G solvation = -3727.607271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60727 -37.35152 -36.90015 -35.77639 -35.13455 -34.59062 -32.31992 -31.02342 -29.99417 -28.14443 -27.94686 -25.13859 -23.43949 -22.23290 -21.62067 -20.91480 -19.52841 -18.74440 -17.84674 -17.23297 -16.52368 -16.25686 -15.86519 -15.25707 -15.07006 -14.72611 -14.27074 -14.17038 -13.81541 -13.52711 -13.28240 -13.06411 -12.92467 -12.80805 -12.66012 -12.26844 -11.91438 -11.86428 -11.77765 -11.63892 -11.59116 -11.44718 -11.34999 -11.25240 -11.00869 -10.95178 -10.88059 -10.64421 -10.56113 -10.23075 -10.11134 -9.49701 -8.92898 -8.57440 -8.44226 -7.77334 -6.04268 -4.13650 0.20238 2.62702 3.28195 3.34414 3.36424 3.43730 3.92242 3.99202 4.10161 4.30645 4.37804 4.43998 4.51910 4.71192 4.78013 4.84179 5.01492 5.13250 5.24466 5.27118 5.28702 5.35616 5.41026 5.59799 5.60814 5.62760 5.67340 5.74549 5.80377 5.86534 5.99080 6.13000 6.31492 7.00861 7.22361 7.32582 7.61433 7.68353 7.79848 8.04952 8.26949 8.77286 8.87052 9.24257 9.53606 11.01517 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.003805 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.347288 B = 7357.091633 C = 8064.700085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.637 4.637 4 S 2.618 3.382 5 O -0.925 6.925 6 O -0.949 6.949 7 N -0.992 5.992 8 C 0.122 3.878 9 C -0.129 4.129 10 C -0.115 4.115 11 C 0.133 3.867 12 H 0.088 0.912 13 C 0.495 3.505 14 O -0.540 6.540 15 N -0.704 5.704 16 C 0.266 3.734 17 H 0.047 0.953 18 C -0.146 4.146 19 C -0.532 4.532 20 H 0.060 0.940 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.386 0.614 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.086 0.914 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.062 3.656 12.303 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.765 4.765 4 S 2.712 3.288 5 O -0.915 6.915 6 O -0.940 6.940 7 N -0.829 5.829 8 C -0.003 4.003 9 C -0.167 4.167 10 C -0.154 4.154 11 C 0.022 3.978 12 H 0.106 0.894 13 C 0.277 3.723 14 O -0.418 6.418 15 N -0.352 5.352 16 C 0.165 3.835 17 H 0.065 0.935 18 C -0.205 4.205 19 C -0.571 4.571 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.520 5.520 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.218 0.782 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.105 0.895 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.692 2.258 12.652 21.867 hybrid contribution -0.737 1.117 -1.165 1.774 sum -18.429 3.375 11.487 21.977 Atomic orbital electron populations 1.21710 0.93916 1.02277 1.02278 1.21263 0.98579 0.92082 1.03802 1.30793 1.28620 1.05755 1.11296 1.05016 0.77004 0.71942 0.74885 1.93687 1.76455 1.77901 1.43461 1.93576 1.77071 1.76513 1.46812 1.58454 1.82898 1.28660 1.12885 1.22000 1.02272 0.89879 0.86170 1.22837 1.00992 0.96113 0.96805 1.22612 1.02557 0.93359 0.96890 1.21329 0.96882 0.91726 0.87829 0.89388 1.20502 0.87404 0.81054 0.83316 1.90654 1.45260 1.40598 1.65287 1.46432 1.26442 1.54505 1.07814 1.18722 0.82126 0.91029 0.91658 0.93532 1.22042 1.01523 0.98227 0.98703 1.21235 1.12604 1.13736 1.09527 0.92138 1.24899 0.95813 0.95215 0.97873 1.69928 1.16585 1.26785 1.38690 0.86460 0.78438 0.79938 0.82272 1.20648 1.21139 1.19897 0.91933 0.92378 0.92210 0.90143 0.90364 0.85400 0.85065 0.90914 0.90634 0.90562 0.89667 0.89670 0.89267 0.78182 0.95904 0.95648 0.89516 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.08 5.94 -26.73 -0.16 -1.24 16 3 C -0.64 -5.80 6.18 37.16 0.23 -5.57 16 4 S 2.62 39.06 5.51 -107.50 -0.59 38.47 16 5 O -0.92 -18.19 15.87 -61.95 -0.98 -19.17 16 6 O -0.95 -16.76 17.70 -57.54 -1.02 -17.78 16 7 N -0.99 -13.69 2.99 -105.63 -0.32 -14.00 16 8 C 0.12 1.31 6.97 -2.52 -0.02 1.29 16 9 C -0.13 -1.04 7.09 -24.45 -0.17 -1.21 16 10 C -0.11 -1.26 6.49 -24.76 -0.16 -1.42 16 11 C 0.13 1.90 3.38 -68.11 -0.23 1.67 16 12 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 13 C 0.49 10.34 5.44 -10.99 -0.06 10.28 16 14 O -0.54 -13.85 15.78 -1.39 -0.02 -13.88 16 15 N -0.70 -15.30 5.07 -54.93 -0.28 -15.57 16 16 C 0.27 7.13 2.56 -69.08 -0.18 6.95 16 17 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 18 C -0.15 -3.97 9.26 37.16 0.34 -3.62 16 19 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 22 N -0.88 -25.65 11.32 55.43 0.63 -25.02 16 23 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 7.05 8.54 -40.82 -0.35 6.70 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -38.05 370.55 -9.80 -47.85 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.35 Total: 4.16 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.43 Total: -6.54 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.03 Total: -54.60 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.02 Total: -50.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 39.06 SS G_CDS: -0.59 Total: 38.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.05 -9.80 -47.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.517 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds