Wall clock time and date at job start Tue Mar 31 2020 04:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 C 1.53006 * 109.47178 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47333 * 186.27859 * 4 3 2 6 6 C 1.46895 * 110.99956 * 178.26318 * 5 4 3 7 7 C 1.50700 * 109.47131 * 197.12469 * 6 5 4 8 8 O 1.21295 * 120.00067 * 355.56619 * 7 6 5 9 9 N 1.34775 * 119.99759 * 175.55833 * 7 6 5 10 10 C 1.37103 * 119.99512 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00399 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99756 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99903 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99964 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47185 * 60.00340 * 14 12 10 16 16 H 1.48507 * 109.47230 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47532 * 300.00171 * 14 12 10 18 18 C 1.46898 * 110.99724 * 302.22051 * 5 4 3 19 19 H 1.09006 * 109.64480 * 206.06213 * 18 5 4 20 20 C 1.53883 * 109.64933 * 85.63001 * 18 5 4 21 21 C 1.55047 * 106.62218 * 192.96417 * 20 18 5 22 22 S 1.83288 * 102.56777 * 42.43722 * 21 20 18 23 23 O 1.42101 * 109.35459 * 90.18404 * 22 21 20 24 24 O 1.42098 * 109.35221 * 223.38393 * 22 21 20 25 25 C 1.54164 * 109.64830 * 326.48932 * 18 5 4 26 26 H 1.08996 * 109.47164 * 59.99980 * 1 2 3 27 27 H 1.08999 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46686 * 299.99572 * 1 2 3 29 29 H 1.08999 * 109.46686 * 240.00428 * 2 1 3 30 30 H 1.08992 * 109.47538 * 120.00341 * 2 1 3 31 31 H 1.09000 * 109.47354 * 60.00199 * 3 2 1 32 32 H 1.09005 * 109.47337 * 300.00201 * 3 2 1 33 33 H 1.08994 * 109.46998 * 66.27176 * 4 3 2 34 34 H 1.09001 * 109.46415 * 306.27408 * 4 3 2 35 35 H 1.09007 * 109.46882 * 77.13079 * 6 5 4 36 36 H 1.08992 * 109.47374 * 317.13441 * 6 5 4 37 37 H 0.96993 * 120.00308 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99912 * 179.97438 * 13 12 10 39 39 H 1.08994 * 110.02738 * 312.26105 * 20 18 5 40 40 H 1.08998 * 110.02017 * 73.62728 * 20 18 5 41 41 H 1.09006 * 110.78587 * 160.70603 * 21 20 18 42 42 H 1.09000 * 110.79116 * 284.16467 * 21 20 18 43 43 H 1.09004 * 110.31926 * 266.66852 * 25 18 5 44 44 H 1.09001 * 110.31679 * 28.85698 * 25 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8192 0.1508 6 6 5.5277 2.8538 0.1958 7 6 5.9819 4.1748 0.7613 8 8 5.1679 5.0363 1.0190 9 7 7.2926 4.3988 0.9809 10 6 7.7058 5.6004 1.4959 11 1 6.9810 6.3671 1.7259 12 6 9.0572 5.8316 1.7218 13 7 9.9392 4.8987 1.4414 14 14 9.6202 7.4689 2.4227 15 1 8.9930 7.6802 3.7521 16 1 11.0982 7.4635 2.5674 17 1 9.2172 8.5650 1.5054 18 6 3.5454 3.6818 -0.9212 19 1 4.2300 4.5148 -1.0816 20 6 2.1577 4.2204 -0.5310 21 6 1.5425 4.8331 -1.8155 22 16 1.9789 3.5963 -3.0959 23 8 0.9419 2.6292 -3.1893 24 8 2.4311 4.2673 -4.2640 25 6 3.4081 2.8660 -2.2221 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 1.0292 -0.9416 34 1 3.9336 0.8344 0.8276 35 1 5.9250 2.7343 -0.8122 36 1 5.8910 2.0436 0.8279 37 1 7.9436 3.7100 0.7746 38 1 10.8826 5.0602 1.5987 39 1 1.5301 3.4066 -0.1679 40 1 2.2574 4.9863 0.2381 41 1 0.4606 4.9259 -1.7200 42 1 1.9964 5.7985 -2.0395 43 1 4.3095 2.9637 -2.8271 44 1 3.2169 1.8177 -1.9929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066543512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:05 Heat of formation + Delta-G solvation = -87.746364 kcal Electronic energy + Delta-G solvation = -26121.519333 eV Core-core repulsion = 22394.979591 eV Total energy + Delta-G solvation = -3726.539742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82605 -37.79381 -37.09774 -36.10870 -34.86188 -34.06968 -33.56585 -31.27214 -29.72137 -29.35000 -26.62360 -25.30574 -24.19412 -22.65229 -21.07200 -20.33624 -19.18978 -18.89733 -17.90093 -17.28099 -17.00240 -16.11454 -15.66606 -15.61011 -15.16370 -14.80583 -14.60493 -14.23580 -14.09724 -13.82496 -13.79232 -13.34785 -13.07508 -12.86338 -12.50444 -12.35060 -12.25352 -12.12962 -12.11640 -12.02174 -11.58850 -11.50038 -11.40580 -11.20458 -11.06589 -10.99189 -10.72218 -10.62571 -10.47768 -10.42148 -10.25319 -10.16471 -9.52298 -8.59129 -8.06939 -8.00228 -6.45826 -3.86852 -0.03463 2.42962 3.16861 3.23340 3.26968 3.46162 3.66817 3.86873 3.93137 4.16690 4.38991 4.54961 4.67935 4.68421 4.74610 4.87292 4.98561 5.01053 5.07360 5.19704 5.24538 5.34618 5.44269 5.50300 5.53764 5.59689 5.66185 5.70277 5.77991 5.82273 5.89447 5.94939 6.07568 6.16029 6.21211 6.22925 6.25093 7.05368 7.13915 7.50954 8.01182 8.56526 9.13530 9.49551 10.00518 10.71739 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003552 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.602998 B = 7880.405826 C = 8788.477068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.134 4.134 4 C 0.043 3.957 5 N -0.496 5.496 6 C 0.041 3.959 7 C 0.442 3.558 8 O -0.578 6.578 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.105 3.895 19 H 0.110 0.890 20 C -0.123 4.123 21 C -0.583 4.583 22 S 2.384 3.616 23 O -0.940 6.940 24 O -0.945 6.945 25 C -0.653 4.653 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -8.612 -5.070 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.171 4.171 4 C -0.085 4.085 5 N -0.219 5.219 6 C -0.090 4.090 7 C 0.227 3.773 8 O -0.462 6.462 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.006 4.006 19 H 0.128 0.872 20 C -0.162 4.162 21 C -0.714 4.714 22 S 2.567 3.433 23 O -0.937 6.937 24 O -0.942 6.942 25 C -0.784 4.784 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.144 -8.058 -5.311 17.958 hybrid contribution 1.646 0.207 0.178 1.668 sum -13.498 -7.851 -5.134 16.438 Atomic orbital electron populations 1.21790 0.95667 1.01546 1.02277 1.21500 0.96213 0.96467 1.01983 1.22150 0.94683 0.97258 1.02994 1.22399 0.95515 0.89796 1.00767 1.61668 1.08354 1.08029 1.43805 1.21935 0.87452 0.99029 1.00582 1.19714 0.83337 0.88942 0.85341 1.90505 1.52701 1.46468 1.56521 1.41861 1.05542 1.16308 1.56271 1.19639 0.92118 0.92775 1.38440 0.87933 1.25257 0.95622 0.99268 0.97704 1.69597 1.02515 1.33780 1.48373 0.85926 0.77280 0.81527 0.79537 1.19879 1.20983 1.19905 1.22118 0.98227 0.95456 0.84804 0.87241 1.22685 0.94533 1.02738 0.96209 1.30587 1.10575 1.15834 1.14449 1.09114 0.78070 0.78379 0.77697 1.93601 1.54027 1.59289 1.86769 1.93602 1.81696 1.74311 1.44555 1.31502 1.20428 1.13930 1.12548 0.92071 0.92940 0.92710 0.92106 0.91833 0.89905 0.91666 0.93906 0.89946 0.92838 0.89107 0.77513 0.91786 0.88091 0.87160 0.84548 0.84331 0.84377 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.13 -1.32 3.18 -26.73 -0.08 -1.41 16 4 C 0.04 0.47 4.37 -3.82 -0.02 0.45 16 5 N -0.50 -7.03 4.13 -226.80 -0.94 -7.97 16 6 C 0.04 0.66 5.39 -4.98 -0.03 0.63 16 7 C 0.44 9.66 7.35 -10.99 -0.08 9.58 16 8 O -0.58 -14.32 14.72 5.54 0.08 -14.24 16 9 N -0.56 -13.59 5.29 -10.96 -0.06 -13.65 16 10 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 11 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 14 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 C 0.10 1.38 1.87 -66.65 -0.12 1.26 16 19 H 0.11 1.71 6.59 -51.93 -0.34 1.37 16 20 C -0.12 -1.42 5.57 -25.19 -0.14 -1.56 16 21 C -0.58 -5.57 7.31 38.24 0.28 -5.29 16 22 S 2.38 26.70 5.73 -107.50 -0.62 26.09 16 23 O -0.94 -12.36 17.44 -57.71 -1.01 -13.37 16 24 O -0.94 -13.98 18.15 -57.71 -1.05 -15.02 16 25 C -0.65 -6.98 5.60 37.77 0.21 -6.77 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.85 7.36 -51.93 -0.38 0.47 16 32 H 0.06 0.64 3.53 -51.93 -0.18 0.46 16 33 H 0.04 0.42 5.97 -51.93 -0.31 0.11 16 34 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.05 0.77 8.02 -51.93 -0.42 0.35 16 36 H 0.09 1.31 7.91 -51.93 -0.41 0.90 16 37 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.10 1.02 4.01 -51.93 -0.21 0.82 16 40 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.14 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.15 1.47 3.94 -51.93 -0.20 1.26 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -33.77 353.04 -9.09 -42.86 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.51 Total: 10.65 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.01 Total: -13.01 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.27 Total: -44.86 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.97 Total: -42.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 26.70 SS G_CDS: -0.62 Total: 26.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.77 -9.09 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066543512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.885 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds