Wall clock time and date at job start Tue Mar 31 2020 05:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 S 1.81399 * 109.47137 * 179.97438 * 3 2 1 5 5 O 1.42104 * 110.54495 * 290.13592 * 4 3 2 6 6 O 1.42106 * 110.54154 * 66.88544 * 4 3 2 7 7 N 1.65596 * 104.44940 * 178.50635 * 4 3 2 8 8 C 1.47023 * 125.64896 * 81.55922 * 7 4 3 9 9 C 1.54323 * 107.27247 * 181.02516 * 8 7 4 10 10 C 1.55149 * 102.94114 * 22.19053 * 9 8 7 11 11 C 1.47430 * 125.65012 * 261.25245 * 7 4 3 12 12 H 1.09005 * 110.36408 * 274.74794 * 11 7 4 13 13 C 1.50697 * 110.36590 * 37.06687 * 11 7 4 14 14 O 1.21290 * 120.00033 * 29.91483 * 13 11 7 15 15 N 1.34773 * 120.00157 * 209.90994 * 13 11 7 16 16 C 1.46502 * 119.99893 * 354.08936 * 15 13 11 17 17 C 1.46501 * 119.99988 * 174.08946 * 15 13 11 18 18 C 1.50695 * 109.47186 * 90.00272 * 17 15 13 19 19 H 1.07995 * 120.00262 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99654 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00023 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46864 * 89.99544 * 22 20 18 24 24 H 1.48494 * 109.47188 * 209.99730 * 22 20 18 25 25 H 1.48497 * 109.46964 * 330.00001 * 22 20 18 26 26 H 1.08995 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46730 * 60.00144 * 1 2 3 28 28 H 1.08998 * 109.47164 * 300.00040 * 1 2 3 29 29 H 1.09005 * 109.47339 * 119.99654 * 2 1 3 30 30 H 1.08998 * 109.47164 * 239.99960 * 2 1 3 31 31 H 1.08995 * 109.46920 * 300.00057 * 3 2 1 32 32 H 1.09004 * 109.46720 * 59.99697 * 3 2 1 33 33 H 1.08999 * 109.88260 * 300.44176 * 8 7 4 34 34 H 1.09004 * 109.88180 * 61.44924 * 8 7 4 35 35 H 1.08994 * 110.72092 * 140.56019 * 9 8 7 36 36 H 1.09008 * 110.71593 * 263.82875 * 9 8 7 37 37 H 1.09005 * 111.00545 * 82.57891 * 10 9 8 38 38 H 1.09007 * 111.00433 * 206.38291 * 10 9 8 39 39 H 1.09004 * 109.47221 * 84.65526 * 16 15 13 40 40 H 1.08997 * 109.47308 * 204.65612 * 16 15 13 41 41 H 1.08996 * 109.46944 * 324.66196 * 16 15 13 42 42 H 1.09005 * 109.46987 * 210.00187 * 17 15 13 43 43 H 1.08994 * 109.47104 * 329.99640 * 17 15 13 44 44 H 0.97003 * 119.99604 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3522 0.9846 1.2504 6 8 4.3532 0.9199 -1.2228 7 7 4.2673 3.0456 -0.0411 8 6 4.3108 3.9498 1.1174 9 6 4.7203 5.3433 0.5959 10 6 4.3348 5.2794 -0.9056 11 6 4.6586 3.8009 -1.2452 12 1 5.7241 3.6785 -1.4401 13 6 3.8513 3.3474 -2.4342 14 8 2.7244 2.9272 -2.2774 15 7 4.3815 3.4089 -3.6717 16 6 5.6898 4.0351 -3.8779 17 6 3.6494 2.8495 -4.8108 18 6 2.7651 3.9122 -5.4104 19 1 2.7501 4.9051 -4.9858 20 6 1.9758 3.6172 -6.5018 21 7 1.2037 4.5446 -7.0248 22 14 2.0022 1.9001 -7.2367 23 1 0.9690 1.0629 -6.5758 24 1 1.7180 1.9800 -8.6920 25 1 3.3406 1.2922 -7.0264 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.3268 4.0028 1.5834 34 1 5.0441 3.5915 1.8399 35 1 4.1585 6.1261 1.1054 36 1 5.7929 5.4987 0.7124 37 1 3.2752 5.4932 -1.0464 38 1 4.9499 5.9585 -1.4962 39 1 6.4763 3.3055 -3.6848 40 1 5.7658 4.3876 -4.9064 41 1 5.8007 4.8779 -3.1957 42 1 4.3580 2.5001 -5.5619 43 1 3.0360 2.0140 -4.4736 44 1 0.6482 4.3370 -7.7924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:12 Heat of formation + Delta-G solvation = -98.934758 kcal Electronic energy + Delta-G solvation = -26934.732109 eV Core-core repulsion = 23207.707202 eV Total energy + Delta-G solvation = -3727.024907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89497 -37.57399 -36.83829 -35.77966 -35.07343 -34.71007 -32.57429 -31.02968 -29.99513 -28.10118 -27.56891 -25.98925 -23.60952 -22.24166 -21.62248 -21.45466 -19.51426 -18.29502 -17.50505 -17.23528 -16.93841 -16.09707 -15.99879 -15.35121 -15.15545 -14.70728 -14.55021 -13.98910 -13.89547 -13.66153 -13.43228 -13.09329 -12.82227 -12.69035 -12.55271 -12.41504 -12.18462 -12.06196 -11.94491 -11.84441 -11.66894 -11.54623 -11.51244 -11.37688 -11.29699 -10.99380 -10.86644 -10.82562 -10.51391 -10.43941 -10.15110 -9.57155 -9.38069 -8.79045 -8.59652 -7.75258 -6.10085 -4.08499 0.41944 2.62905 3.14242 3.29365 3.35447 3.38830 3.70747 3.95017 4.15243 4.39328 4.44812 4.58966 4.69023 4.81109 4.89928 4.97781 5.12154 5.17107 5.24010 5.27467 5.39909 5.51425 5.52378 5.61535 5.63763 5.74571 5.75492 5.80026 5.84564 5.92283 5.99532 6.07867 6.12671 6.14789 6.22949 6.29682 6.69973 6.96382 7.29789 7.59771 8.15772 8.44308 8.81960 8.93383 9.50471 11.03102 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.005541 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.370317 B = 5051.816807 C = 6260.643677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.626 4.626 4 S 2.622 3.378 5 O -0.968 6.968 6 O -0.944 6.944 7 N -0.997 5.997 8 C 0.119 3.881 9 C -0.125 4.125 10 C -0.118 4.118 11 C 0.134 3.866 12 H 0.095 0.905 13 C 0.510 3.490 14 O -0.546 6.546 15 N -0.582 5.582 16 C 0.078 3.922 17 C 0.216 3.784 18 C -0.526 4.526 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.873 3.127 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.265 1.265 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.039 0.961 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -0.846 16.378 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.757 4.757 4 S 2.719 3.281 5 O -0.959 6.959 6 O -0.935 6.935 7 N -0.834 5.834 8 C -0.007 4.007 9 C -0.164 4.164 10 C -0.158 4.158 11 C 0.024 3.976 12 H 0.113 0.887 13 C 0.295 3.705 14 O -0.426 6.426 15 N -0.312 5.312 16 C -0.066 4.066 17 C 0.095 3.905 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.700 3.300 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.189 1.189 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.186 0.814 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.681 -1.852 16.306 17.719 hybrid contribution -0.700 -0.345 -0.577 0.971 sum 5.981 -2.196 15.729 16.970 Atomic orbital electron populations 1.21688 0.93909 1.01882 1.02622 1.21219 0.98790 0.92415 1.02829 1.30778 1.25838 1.05697 1.13357 1.04629 0.78036 0.71551 0.73861 1.93551 1.78466 1.78732 1.45153 1.93604 1.78056 1.76419 1.45405 1.58528 1.83490 1.27951 1.13423 1.21739 1.01462 0.89839 0.87616 1.22621 1.02128 0.96020 0.95617 1.22802 1.03737 0.93159 0.96082 1.21711 0.99002 0.92683 0.84212 0.88681 1.20257 0.86905 0.78977 0.84333 1.90480 1.18790 1.48155 1.85136 1.47678 1.19217 1.56700 1.07611 1.21768 0.84541 0.96863 1.03415 1.19730 0.92248 0.95353 0.83129 1.21308 1.23530 0.98256 1.13404 0.90693 1.24839 0.94756 0.96920 0.96444 1.69896 1.26632 1.33313 1.23807 0.86889 0.79355 0.85244 0.78493 1.19916 1.21064 1.18917 0.92282 0.91695 0.92551 0.91274 0.90399 0.81384 0.86120 0.91706 0.90695 0.89728 0.90295 0.89421 0.89225 0.93196 0.89974 0.92197 0.94991 0.94322 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.11 -1.51 5.94 -26.73 -0.16 -1.67 16 3 C -0.63 -9.05 5.89 37.16 0.22 -8.83 16 4 S 2.62 42.62 4.79 -107.50 -0.51 42.11 16 5 O -0.97 -16.55 17.74 -57.54 -1.02 -17.58 16 6 O -0.94 -18.78 15.90 -63.37 -1.01 -19.79 16 7 N -1.00 -14.27 3.34 -105.53 -0.35 -14.63 16 8 C 0.12 1.25 7.00 -3.06 -0.02 1.22 16 9 C -0.13 -1.06 6.95 -24.90 -0.17 -1.24 16 10 C -0.12 -1.36 6.32 -24.47 -0.15 -1.52 16 11 C 0.13 1.97 2.51 -67.45 -0.17 1.80 16 12 H 0.10 1.24 6.94 -51.93 -0.36 0.88 16 13 C 0.51 10.16 5.27 -10.99 -0.06 10.10 16 14 O -0.55 -12.31 12.22 -6.63 -0.08 -12.39 16 15 N -0.58 -12.04 2.86 -182.96 -0.52 -12.56 16 16 C 0.08 1.18 9.59 59.85 0.57 1.76 16 17 C 0.22 5.32 4.16 -5.20 -0.02 5.30 16 18 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 19 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 22 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.17 2.87 5.37 -51.93 -0.28 2.59 16 32 H 0.12 1.39 8.14 -51.92 -0.42 0.97 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 38 H 0.09 0.87 7.47 -51.92 -0.39 0.48 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 41 H 0.06 0.72 6.29 -51.93 -0.33 0.39 16 42 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.04 1.02 6.94 -51.93 -0.36 0.66 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -36.52 360.15 -9.16 -45.68 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.16 Total: 0.96 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.03 Total: -7.60 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.10 Total: -53.78 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -2.11 Total: -49.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 42.62 SS G_CDS: -0.51 Total: 42.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.52 -9.16 -45.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.256 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds