Wall clock time and date at job start Tue Mar 31 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 C 1.50698 * 109.47187 * 119.99898 * 2 1 3 5 5 O 1.21289 * 119.99641 * 120.00789 * 4 2 1 6 6 N 1.34769 * 120.00025 * 299.99931 * 4 2 1 7 7 C 1.46509 * 119.99850 * 179.97438 * 6 4 2 8 8 C 1.53350 * 109.41915 * 275.13242 * 7 6 4 9 9 C 1.53198 * 109.14641 * 178.67654 * 8 7 6 10 10 N 1.46925 * 108.89335 * 54.57862 * 9 8 7 11 11 C 1.36931 * 120.63201 * 126.29969 * 10 9 8 12 12 H 1.08005 * 119.99889 * 331.83485 * 11 10 9 13 13 C 1.38813 * 120.00220 * 151.82683 * 11 10 9 14 14 N 1.31618 * 120.00004 * 343.08678 * 13 11 10 15 15 Si 1.86806 * 119.99953 * 163.08567 * 13 11 10 16 16 H 1.48496 * 109.47191 * 90.00149 * 15 13 11 17 17 H 1.48501 * 109.46981 * 210.00196 * 15 13 11 18 18 H 1.48500 * 109.46794 * 329.99854 * 15 13 11 19 19 C 1.46925 * 118.73856 * 306.31536 * 10 9 8 20 20 C 1.53044 * 109.45681 * 155.00448 * 7 6 4 21 21 S 1.81404 * 109.47438 * 240.00433 * 2 1 3 22 22 C 1.81398 * 101.92275 * 59.99352 * 21 2 1 23 23 O 1.42099 * 108.58029 * 174.48275 * 21 2 1 24 24 O 1.42101 * 108.57411 * 305.50633 * 21 2 1 25 25 H 1.08989 * 109.47164 * 299.99673 * 1 2 3 26 26 H 1.08997 * 109.47422 * 60.00060 * 1 2 3 27 27 H 1.09008 * 109.46651 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47452 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47462 * 299.99933 * 3 2 1 30 30 H 1.09003 * 109.47050 * 60.00049 * 3 2 1 31 31 H 0.97003 * 120.00205 * 0.02562 * 6 4 2 32 32 H 1.08997 * 109.45697 * 35.03653 * 7 6 4 33 33 H 1.08996 * 109.68537 * 58.71419 * 8 7 6 34 34 H 1.09000 * 109.47180 * 298.51335 * 8 7 6 35 35 H 1.08997 * 109.58387 * 294.71773 * 9 8 7 36 36 H 1.08993 * 109.58533 * 174.43928 * 9 8 7 37 37 H 0.96996 * 119.99787 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.58495 * 173.39541 * 19 10 9 39 39 H 1.09000 * 109.58924 * 293.68296 * 19 10 9 40 40 H 1.08996 * 109.49900 * 61.43623 * 20 7 6 41 41 H 1.08999 * 109.52516 * 301.35463 * 20 7 6 42 42 H 1.09003 * 109.46961 * 60.00141 * 22 21 2 43 43 H 1.08994 * 109.47327 * 180.02562 * 22 21 2 44 44 H 1.09000 * 109.47250 * 300.00823 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7298 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.2490 -2.0988 3.9921 9 6 1.7827 -2.8371 5.2237 10 7 1.9726 -1.8696 6.3131 11 6 1.3988 -2.0777 7.5389 12 1 0.4839 -2.6462 7.6173 13 6 1.9932 -1.5581 8.6807 14 7 3.2484 -1.1635 8.6478 15 14 1.0115 -1.4190 10.2639 16 1 1.1652 -2.6675 11.0530 17 1 1.5118 -0.2675 11.0569 18 1 -0.4228 -1.2113 9.9402 19 6 2.7895 -0.6745 6.0621 20 6 2.2462 0.0426 4.8222 21 16 2.1348 -0.8550 -1.4812 22 6 1.4229 0.1515 -2.8118 23 8 3.5497 -0.7328 -1.5285 24 8 1.5481 -2.1484 -1.5285 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1488 0.5386 2.5435 32 1 3.1940 -1.3328 3.4614 33 1 1.1942 -2.7886 3.1499 34 1 0.2553 -1.7053 4.2060 35 1 2.7358 -3.3079 4.9829 36 1 1.0666 -3.5987 5.5320 37 1 3.6635 -0.8001 9.4455 38 1 2.7356 -0.0078 6.9227 39 1 3.8252 -0.9688 5.8922 40 1 1.2431 0.4160 5.0281 41 1 2.9001 0.8771 4.5688 42 1 1.7893 1.1748 -2.7291 43 1 1.7152 -0.2625 -3.7768 44 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070129465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:13 Heat of formation + Delta-G solvation = -85.852625 kcal Electronic energy + Delta-G solvation = -26092.407122 eV Core-core repulsion = 22365.949499 eV Total energy + Delta-G solvation = -3726.457623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.26718 -37.53697 -37.18734 -36.16568 -35.54019 -34.48360 -32.06452 -30.20193 -29.88904 -29.30686 -27.99141 -25.30695 -24.07379 -22.34617 -22.05864 -20.43597 -19.56578 -18.71982 -17.83452 -16.99019 -16.70688 -16.10454 -15.98999 -15.51231 -15.21467 -14.81908 -14.46691 -13.92237 -13.76901 -13.62544 -13.58150 -13.51868 -13.36083 -13.01086 -12.73996 -12.63405 -12.55885 -12.43569 -12.19752 -12.16301 -11.86679 -11.50409 -11.25993 -11.16871 -10.93138 -10.74046 -10.71235 -10.55547 -10.33572 -10.09913 -10.03552 -9.78255 -9.55505 -8.85893 -8.48925 -6.70993 -5.82025 -3.24204 -0.35397 2.41374 2.43337 2.88518 3.35575 3.42661 3.44606 3.61999 3.67166 4.09491 4.11324 4.34964 4.43496 4.47398 4.64893 4.86941 4.97007 5.06427 5.09725 5.23200 5.29170 5.37004 5.44718 5.51644 5.53799 5.59155 5.80957 6.02362 6.17864 6.25982 6.45770 6.51379 6.52428 6.75210 6.80340 6.96617 7.27327 7.41135 7.59777 7.77286 8.07571 8.42091 9.18221 9.81343 10.38444 11.27034 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.002914 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.242039 B = 9608.121320 C = 9690.925221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.580 4.580 3 C -0.139 4.139 4 C 0.546 3.454 5 O -0.528 6.528 6 N -0.706 5.706 7 C 0.147 3.853 8 C -0.140 4.140 9 C 0.147 3.853 10 N -0.593 5.593 11 C -0.253 4.253 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.174 3.826 20 C -0.146 4.146 21 S 2.454 3.546 22 C -0.666 4.666 23 O -0.920 6.920 24 O -0.920 6.920 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.398 0.602 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 9.454 -21.628 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.670 4.670 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.405 6.405 6 N -0.355 5.355 7 C 0.045 3.955 8 C -0.181 4.181 9 C 0.020 3.980 10 N -0.315 5.315 11 C -0.383 4.383 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.547 5.547 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.048 3.952 20 C -0.186 4.186 21 S 2.630 3.370 22 C -0.815 4.815 23 O -0.917 6.917 24 O -0.917 6.917 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.232 0.768 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.673 8.065 -21.563 23.710 hybrid contribution -1.295 1.322 0.951 2.081 sum -6.968 9.387 -20.612 23.696 Atomic orbital electron populations 1.21795 0.87778 1.05072 1.04999 1.30523 1.08262 1.10729 1.17442 1.21798 1.03215 0.89635 1.05013 1.19037 0.80335 0.83905 0.83901 1.90863 1.37839 1.25683 1.86165 1.46154 1.52528 1.31466 1.05344 1.21268 0.98615 0.93268 0.82392 1.22453 0.98938 0.97288 0.99402 1.20876 0.97820 0.91799 0.87521 1.44091 1.59344 1.19430 1.08671 1.19176 1.03222 1.32714 0.83138 0.91650 1.25059 0.95089 1.01937 0.97559 1.70023 1.10022 1.46208 1.28470 0.86301 0.79616 0.77429 0.83448 1.21353 1.21572 1.20515 1.20745 0.92132 0.88841 0.93525 1.22543 1.01668 0.97565 0.96788 1.07439 0.76052 0.76378 0.77160 1.30468 1.14300 1.16919 1.19787 1.93579 1.26485 1.86495 1.85158 1.93581 1.79381 1.33560 1.85144 0.89677 0.90255 0.89726 0.89741 0.90252 0.89672 0.76799 0.89578 0.92424 0.92219 0.96038 0.92446 0.93575 0.88965 0.95978 0.92120 0.92637 0.85068 0.84916 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.12 37.16 0.30 -0.56 16 2 C -0.58 -5.37 0.72 -91.77 -0.07 -5.44 16 3 C -0.14 -0.85 8.12 37.16 0.30 -0.55 16 4 C 0.55 7.81 6.46 -10.99 -0.07 7.74 16 5 O -0.53 -10.12 15.29 2.54 0.04 -10.08 16 6 N -0.71 -9.38 4.86 -53.60 -0.26 -9.64 16 7 C 0.15 2.52 2.42 -67.72 -0.16 2.36 16 8 C -0.14 -2.56 5.68 -26.45 -0.15 -2.71 16 9 C 0.15 3.17 6.50 -3.71 -0.02 3.14 16 10 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 11 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 12 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 14 N -0.90 -25.87 11.20 55.49 0.62 -25.25 16 15 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 20 C -0.15 -2.57 5.55 -26.61 -0.15 -2.72 16 21 S 2.45 26.56 3.65 -107.50 -0.39 26.16 16 22 C -0.67 -3.06 9.72 101.05 0.98 -2.08 16 23 O -0.92 -13.52 17.76 -59.53 -1.06 -14.58 16 24 O -0.92 -13.53 17.76 -59.53 -1.06 -14.59 16 25 H 0.08 0.44 7.56 -51.94 -0.39 0.05 16 26 H 0.08 0.20 6.56 -51.93 -0.34 -0.14 16 27 H 0.08 0.64 8.06 -51.92 -0.42 0.22 16 28 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 29 H 0.08 0.20 6.56 -51.93 -0.34 -0.15 16 30 H 0.08 0.43 7.56 -51.93 -0.39 0.03 16 31 H 0.40 3.95 7.44 -40.82 -0.30 3.65 16 32 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 0.29 6.87 -51.92 -0.36 -0.06 16 43 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.13 0.30 6.87 -51.92 -0.36 -0.06 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -37.29 357.80 -8.50 -45.79 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.95 Total: -0.48 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 0.71 Total: -3.84 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.16 Total: -50.10 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -2.08 Total: -39.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: 26.56 SS G_CDS: -0.39 Total: 26.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.29 -8.50 -45.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070129465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.065 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds