Wall clock time and date at job start Tue Mar 31 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 O 1.42900 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.35948 * 116.99702 * 179.97438 * 4 3 2 6 6 C 1.38728 * 119.99488 * 359.72231 * 5 4 3 7 7 C 1.38085 * 120.01308 * 179.76495 * 6 5 4 8 8 C 1.38815 * 119.98509 * 0.51243 * 7 6 5 9 9 N 1.40348 * 120.00763 * 179.71918 * 8 7 6 10 10 C 1.33875 * 122.76029 * 112.46592 * 9 8 7 11 11 O 1.21239 * 125.39588 * 359.97438 * 10 9 8 12 12 C 1.51309 * 109.20437 * 179.84372 * 10 9 8 13 13 C 1.54228 * 103.55917 * 0.39223 * 12 10 9 14 14 H 1.08994 * 110.60608 * 118.29196 * 13 12 10 15 15 N 1.46498 * 110.73915 * 241.19813 * 13 12 10 16 16 C 1.36935 * 120.00233 * 200.66463 * 15 13 12 17 17 H 1.08002 * 119.99522 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00236 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47077 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46585 * 120.00267 * 20 18 16 23 23 H 1.48503 * 109.46898 * 239.99946 * 20 18 16 24 24 C 1.33877 * 122.76276 * 292.76255 * 9 8 7 25 25 O 1.21233 * 125.39421 * 359.97438 * 24 9 8 26 26 C 1.38810 * 119.98188 * 359.74642 * 8 7 6 27 27 C 1.38077 * 119.99201 * 359.97438 * 26 8 7 28 28 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46516 * 300.00363 * 1 2 3 30 30 H 1.09000 * 109.46805 * 59.99710 * 1 2 3 31 31 H 1.09000 * 109.46805 * 120.00290 * 2 1 3 32 32 H 1.09005 * 109.46800 * 239.99578 * 2 1 3 33 33 H 1.09001 * 109.46657 * 300.00001 * 3 2 1 34 34 H 1.08999 * 109.46880 * 59.99731 * 3 2 1 35 35 H 1.08003 * 119.99342 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.00578 * 180.27403 * 7 6 5 37 37 H 1.09004 * 110.79967 * 241.78329 * 12 10 9 38 38 H 1.09005 * 110.55015 * 118.88109 * 12 10 9 39 39 H 0.97011 * 119.99981 * 20.66199 * 15 13 12 40 40 H 0.96996 * 120.00408 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.00451 * 179.97438 * 26 8 7 42 42 H 1.08001 * 119.99913 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0863 2.6537 0.0001 6 6 3.3306 3.8171 -0.0067 7 6 3.9571 5.0477 -0.0023 8 6 5.3433 5.1205 -0.0017 9 7 5.9805 6.3709 -0.0032 10 6 6.6923 6.8225 1.0369 11 8 6.8698 6.2270 2.0779 12 6 7.2427 8.1926 0.7060 13 6 6.7118 8.4616 -0.7168 14 1 6.0642 9.3382 -0.7251 15 7 7.8194 8.6317 -1.6603 16 6 7.6134 9.2807 -2.8484 17 1 6.6341 9.6669 -3.0899 18 6 8.6631 9.4423 -3.7422 19 7 9.8563 8.9713 -3.4480 20 14 8.3817 10.3271 -5.3632 21 1 6.9631 10.7567 -5.4528 22 1 9.2649 11.5187 -5.4364 23 1 8.6938 9.4097 -6.4885 24 6 5.9219 7.2128 -1.0425 25 8 5.3300 7.0069 -2.0803 26 6 6.0991 3.9561 -0.0003 27 6 5.4718 2.7261 0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9562 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.2521 3.7603 -0.0112 36 1 3.3686 5.9533 -0.0031 37 1 8.3327 8.1839 0.7134 38 1 6.8614 8.9371 1.4049 39 1 8.6990 8.2845 -1.4435 40 1 10.5899 9.0845 -4.0724 41 1 7.1776 4.0123 -0.0003 42 1 6.0597 1.8201 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100560599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:50 Heat of formation + Delta-G solvation = -58.765603 kcal Electronic energy + Delta-G solvation = -25962.936209 eV Core-core repulsion = 22102.209215 eV Total energy + Delta-G solvation = -3860.726993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76081 -40.10869 -38.09539 -37.66941 -35.53367 -34.85858 -34.10679 -32.30267 -31.19321 -30.01882 -28.36337 -26.75878 -25.33146 -23.73180 -23.23510 -22.62592 -21.70783 -21.22373 -19.48946 -18.37495 -17.78529 -17.26934 -16.65002 -16.56578 -16.01034 -15.68802 -15.06881 -14.72398 -14.46459 -14.44280 -14.24268 -13.83287 -13.70376 -13.62029 -13.38824 -13.25918 -13.02650 -12.74873 -12.68541 -12.42071 -12.11344 -11.65472 -11.57544 -11.41814 -11.05053 -11.03125 -10.97820 -10.92474 -10.38760 -10.13835 -10.04192 -9.80053 -9.64410 -9.11821 -9.05661 -8.15528 -7.31154 -5.98945 -3.31564 1.20290 1.25356 1.95774 2.80093 2.96063 3.13210 3.36753 3.43011 3.45431 3.61401 4.40999 4.46788 4.49137 4.58153 4.69814 4.76036 4.81515 4.86313 4.93883 4.99593 5.02905 5.18144 5.23391 5.28117 5.31145 5.42691 5.47462 5.54793 5.63887 5.65608 5.74456 5.80994 5.88569 5.98598 6.16847 6.18599 6.24588 6.38153 6.63896 7.18298 7.23393 7.58211 7.71850 8.14158 8.33163 9.28566 9.69413 10.05546 11.21970 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.002858 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.700391 B = 9796.408282 C =10637.524907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.056 3.944 4 O -0.315 6.315 5 C 0.132 3.868 6 C -0.199 4.199 7 C -0.061 4.061 8 C 0.083 3.917 9 N -0.532 5.532 10 C 0.533 3.467 11 O -0.494 6.494 12 C -0.162 4.162 13 C 0.155 3.845 14 H 0.105 0.895 15 N -0.687 5.687 16 C -0.254 4.254 17 H 0.081 0.919 18 C -0.002 4.002 19 N -0.925 5.925 20 Si 0.915 3.085 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.490 3.510 25 O -0.468 6.468 26 C -0.061 4.061 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.392 0.608 40 H 0.260 0.740 41 H 0.133 0.867 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 -12.262 10.322 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.019 4.019 4 O -0.229 6.229 5 C 0.087 3.913 6 C -0.219 4.219 7 C -0.081 4.081 8 C -0.006 4.006 9 N -0.274 5.274 10 C 0.323 3.677 11 O -0.366 6.366 12 C -0.202 4.202 13 C 0.039 3.961 14 H 0.122 0.878 15 N -0.328 5.328 16 C -0.384 4.384 17 H 0.099 0.901 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.276 3.724 25 O -0.335 6.335 26 C -0.081 4.081 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.228 0.772 40 H 0.070 0.930 41 H 0.151 0.849 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.671 -12.744 10.086 21.894 hybrid contribution 0.031 0.264 -0.968 1.004 sum -14.640 -12.480 9.118 21.289 Atomic orbital electron populations 1.21696 0.94242 1.02527 1.02288 1.21486 0.96033 0.94833 1.03755 1.22900 0.78515 0.98856 1.01606 1.86052 1.21274 1.26911 1.88637 1.18972 0.92210 0.84021 0.96120 1.21042 1.00029 0.91621 1.09165 1.20880 0.92878 0.97835 0.96491 1.17706 0.91499 0.84977 1.06404 1.45029 1.47552 1.16232 1.18588 1.21041 0.76292 0.88534 0.81811 1.90724 1.57346 1.63426 1.25154 1.22860 1.04812 0.93838 0.98697 1.21007 0.92011 0.94106 0.88998 0.87795 1.42434 1.05966 1.65993 1.18359 1.19338 0.96190 1.28942 0.93939 0.90138 1.24843 0.95450 1.00628 0.99000 1.69663 1.00615 1.49772 1.37055 0.86007 0.77659 0.78773 0.83067 1.20113 1.21541 1.21562 1.23976 0.79073 0.87381 0.81936 1.90666 1.40441 1.77991 1.24364 1.20981 1.00278 0.90528 0.96269 1.20249 0.91302 0.98127 1.06341 0.91723 0.92347 0.92289 0.90813 0.90768 0.91862 0.91943 0.84997 0.85375 0.85753 0.86193 0.77213 0.93046 0.84872 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.84 6.30 -26.73 -0.17 -1.01 16 3 C 0.06 0.48 4.74 37.16 0.18 0.66 16 4 O -0.31 -3.73 10.14 -19.58 -0.20 -3.93 16 5 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 6 C -0.20 -2.55 9.03 -39.46 -0.36 -2.90 16 7 C -0.06 -0.91 9.79 -39.42 -0.39 -1.29 16 8 C 0.08 1.39 4.95 -83.53 -0.41 0.98 16 9 N -0.53 -9.20 2.61 -59.38 -0.16 -9.36 16 10 C 0.53 8.67 7.96 -11.09 -0.09 8.58 16 11 O -0.49 -8.94 17.61 5.59 0.10 -8.84 16 12 C -0.16 -2.29 6.79 -26.94 -0.18 -2.47 16 13 C 0.16 2.80 3.72 -68.14 -0.25 2.54 16 14 H 0.10 1.73 8.12 -51.93 -0.42 1.30 16 15 N -0.69 -15.86 5.20 -53.63 -0.28 -16.14 16 16 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 19 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 20 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.49 9.58 7.59 -11.09 -0.08 9.49 16 25 O -0.47 -10.79 17.60 5.60 0.10 -10.69 16 26 C -0.06 -0.95 9.80 -39.43 -0.39 -1.34 16 27 C -0.14 -1.94 9.98 -39.46 -0.39 -2.33 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 34 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 35 H 0.13 1.31 6.29 -52.48 -0.33 0.98 16 36 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.12 1.74 7.67 -51.93 -0.40 1.34 16 38 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.39 9.44 7.52 -40.82 -0.31 9.13 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.80 363.89 -7.53 -40.34 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.60 Total: 7.17 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.68 Total: 5.00 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.29 Total: -51.29 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.00 Total: -23.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.80 -7.53 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100560599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.430 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds