Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 109.56768 * 2 1 4 4 C 1.50434 * 109.57033 * 239.63955 * 2 1 3 5 5 O 1.21282 * 118.48964 * 47.48919 * 4 2 1 6 6 N 1.33384 * 123.02455 * 227.46835 * 4 2 1 7 7 C 1.45646 * 124.58689 * 4.32187 * 6 4 2 8 8 C 1.53464 * 110.74101 * 337.97384 * 7 6 4 9 9 N 1.47046 * 109.57110 * 120.22975 * 2 1 3 10 10 C 1.34782 * 121.35116 * 342.54038 * 9 2 1 11 11 O 1.21279 * 120.00069 * 4.64672 * 10 9 2 12 12 C 1.50703 * 119.99834 * 184.64429 * 10 9 2 13 13 C 1.50703 * 109.46813 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.92891 * 90.00201 * 13 12 10 15 15 C 1.38098 * 120.06839 * 179.97438 * 14 13 12 16 16 C 1.38885 * 119.93223 * 0.02562 * 15 14 13 17 17 O 1.35743 * 120.06990 * 180.02562 * 16 15 14 18 18 C 1.34827 * 117.00453 * 354.13942 * 17 16 15 19 19 H 1.08001 * 119.99437 * 355.17974 * 18 17 16 20 20 C 1.38659 * 120.00512 * 175.18296 * 18 17 16 21 21 N 1.31551 * 120.00049 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99855 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47108 * 89.99690 * 22 20 18 24 24 H 1.48493 * 109.47347 * 209.99884 * 22 20 18 25 25 H 1.48500 * 109.46923 * 330.00048 * 22 20 18 26 26 C 1.38885 * 119.85748 * 0.27446 * 16 15 14 27 27 C 1.38098 * 119.93098 * 359.40666 * 26 16 15 28 28 H 1.09006 * 109.47414 * 310.26379 * 1 2 3 29 29 H 1.09004 * 109.47536 * 70.26254 * 1 2 3 30 30 H 1.08999 * 109.47517 * 190.26562 * 1 2 3 31 31 H 0.96998 * 117.70543 * 184.34054 * 6 4 2 32 32 H 1.08994 * 109.21993 * 98.43410 * 7 6 4 33 33 H 1.09001 * 109.21166 * 217.80792 * 7 6 4 34 34 H 1.09004 * 109.85080 * 287.32430 * 8 7 6 35 35 H 1.08993 * 109.84160 * 166.50751 * 8 7 6 36 36 H 1.09000 * 109.47257 * 60.00646 * 12 10 9 37 37 H 1.08998 * 109.47270 * 299.99631 * 12 10 9 38 38 H 1.07998 * 119.96811 * 359.97438 * 14 13 12 39 39 H 1.08001 * 120.03649 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00059 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.02853 * 179.72508 * 26 16 15 42 42 H 1.08005 * 119.96549 * 180.31947 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0338 -0.7164 -1.2231 5 8 1.5489 -0.4359 -2.2987 6 7 2.9896 -1.6457 -1.1790 7 6 3.5986 -2.1481 0.0449 8 6 3.4267 -1.1413 1.1904 9 7 2.0225 -0.6976 1.1971 10 6 1.2228 -0.9170 2.2596 11 8 0.0500 -0.6125 2.2091 12 6 1.7861 -1.5408 3.5105 13 6 0.6940 -1.6757 4.5402 14 6 -0.0711 -2.8269 4.5878 15 6 -1.0723 -2.9538 5.5304 16 6 -1.3109 -1.9237 6.4310 17 8 -2.2939 -2.0457 7.3591 18 6 -3.0812 -3.1371 7.2770 19 1 -2.9656 -3.8255 6.4530 20 6 -4.0394 -3.3756 8.2505 21 7 -4.8079 -4.4403 8.1702 22 14 -4.2398 -2.1844 9.6754 23 1 -5.2288 -1.1384 9.3107 24 1 -4.7173 -2.9211 10.8731 25 1 -2.9326 -1.5467 9.9750 26 6 -0.5449 -0.7664 6.3765 27 6 0.4592 -0.6483 5.4357 28 1 -0.3634 0.6642 0.7842 29 1 -0.3634 0.3471 -0.9673 30 1 -0.3634 -1.0112 0.1831 31 1 3.3011 -2.0125 -2.0212 32 1 3.1265 -3.0913 0.3196 33 1 4.6620 -2.3156 -0.1261 34 1 4.0822 -0.2849 1.0320 35 1 3.6664 -1.6179 2.1408 36 1 2.5812 -0.9085 3.9056 37 1 2.1883 -2.5263 3.2757 38 1 0.1146 -3.6274 3.8870 39 1 -1.6692 -3.8531 5.5674 40 1 -5.4779 -4.6074 8.8514 41 1 -0.7310 0.0381 7.0725 42 1 1.0586 0.2493 5.3963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110692542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -49.713263 kcal Electronic energy + Delta-G solvation = -26218.045382 eV Core-core repulsion = 22357.710928 eV Total energy + Delta-G solvation = -3860.334454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22949 -39.58483 -38.90970 -36.96394 -36.59731 -34.59585 -32.85530 -32.30263 -30.91527 -30.23692 -28.93419 -26.90262 -25.52739 -24.77517 -23.51789 -22.11098 -21.29701 -20.20090 -19.05570 -17.89436 -17.75788 -17.60679 -17.23093 -16.39425 -16.14878 -15.80360 -15.35676 -14.83291 -14.63984 -14.28171 -14.09463 -13.88485 -13.72276 -13.54301 -13.33737 -13.11986 -12.69799 -12.56222 -12.52914 -12.23535 -12.19933 -12.16159 -11.81015 -11.62573 -11.28897 -10.94479 -10.79157 -10.62441 -10.56702 -10.15703 -9.59854 -9.40478 -9.27632 -8.94334 -8.84945 -8.23931 -7.31397 -6.41154 -4.07411 2.07655 2.15702 2.21208 2.50909 2.55288 2.88079 3.23261 3.26394 3.40459 3.99101 4.12267 4.24261 4.35604 4.51483 4.59578 4.72873 4.84142 4.88874 4.92164 4.95476 5.08013 5.14705 5.18615 5.23054 5.52249 5.62260 5.63291 5.73969 5.88846 5.96071 6.13486 6.31018 6.32724 6.38391 6.55769 6.78816 6.80868 6.99885 7.11360 7.21536 7.30564 7.61578 7.75308 7.80578 8.04342 8.11061 8.94089 9.56695 10.66567 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.002575 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.276596 B =10872.027894 C =11046.620988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.136 3.864 3 H 0.102 0.898 4 C 0.515 3.485 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.094 3.906 8 C 0.092 3.908 9 N -0.628 5.628 10 C 0.517 3.483 11 O -0.501 6.501 12 C -0.080 4.080 13 C -0.165 4.165 14 C -0.057 4.057 15 C -0.219 4.219 16 C 0.163 3.837 17 O -0.217 6.217 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.191 4.191 27 C -0.060 4.060 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.116 0.884 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.473 5.608 -13.630 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.030 3.970 3 H 0.120 0.880 4 C 0.300 3.700 5 O -0.419 6.419 6 N -0.372 5.372 7 C -0.032 4.032 8 C -0.032 4.032 9 N -0.367 5.367 10 C 0.305 3.695 11 O -0.374 6.374 12 C -0.120 4.120 13 C -0.166 4.166 14 C -0.075 4.075 15 C -0.238 4.238 16 C 0.111 3.889 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.210 4.210 27 C -0.079 4.079 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.186 6.022 -13.672 25.112 hybrid contribution 0.151 -0.039 0.191 0.247 sum 20.336 5.983 -13.481 25.122 Atomic orbital electron populations 1.22086 0.89516 1.04845 1.02560 1.21355 0.98511 0.95920 0.81204 0.88041 1.20499 0.78711 0.79509 0.91264 1.90782 1.56414 1.64690 1.30016 1.45365 1.39793 1.41744 1.10298 1.21876 0.99014 0.97607 0.84679 1.22190 0.82810 0.98283 0.99901 1.48439 1.11812 1.60087 1.16341 1.21071 0.86315 0.78288 0.83779 1.90799 1.15961 1.49208 1.81439 1.20489 0.98211 1.01635 0.91624 1.18669 1.01332 0.96796 0.99802 1.20547 0.94239 0.96193 0.96545 1.21228 1.02136 1.01027 0.99454 1.19143 0.87746 0.93185 0.88864 1.83575 1.38285 1.43707 1.46628 1.20771 1.12920 1.00909 1.11774 0.87662 1.24471 0.94923 0.96543 0.98090 1.69647 1.20839 1.25595 1.35678 0.86172 0.79605 0.80524 0.80556 1.19843 1.20838 1.18352 1.20146 0.99900 0.97470 1.03518 1.20385 0.96471 0.96802 0.94217 0.89101 0.92012 0.91390 0.76492 0.90917 0.89118 0.90038 0.87179 0.88736 0.88896 0.87620 0.84981 0.91049 0.86553 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 7.59 37.15 0.28 -1.42 16 2 C 0.14 1.40 3.67 -68.92 -0.25 1.15 16 3 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 4 C 0.51 5.47 7.35 -11.73 -0.09 5.38 16 5 O -0.54 -7.78 17.00 5.56 0.09 -7.69 16 6 N -0.72 -5.01 5.42 -61.07 -0.33 -5.34 16 7 C 0.09 0.36 7.35 -4.26 -0.03 0.33 16 8 C 0.09 0.40 6.48 -3.38 -0.02 0.38 16 9 N -0.63 -5.62 2.97 -166.26 -0.49 -6.11 16 10 C 0.52 6.24 7.54 -10.98 -0.08 6.16 16 11 O -0.50 -8.31 11.92 5.56 0.07 -8.25 16 12 C -0.08 -0.83 4.21 -29.03 -0.12 -0.95 16 13 C -0.16 -2.58 4.38 -104.57 -0.46 -3.04 16 14 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 15 C -0.22 -4.75 9.14 -39.39 -0.36 -5.11 16 16 C 0.16 3.79 6.65 -39.10 -0.26 3.53 16 17 O -0.22 -5.77 8.59 0.08 0.00 -5.77 16 18 C -0.39 -11.03 9.91 30.89 0.31 -10.72 16 19 H 0.11 3.06 5.52 -52.49 -0.29 2.77 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 22 Si 0.91 21.78 28.62 -169.99 -4.86 16.92 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.19 -3.79 9.99 -39.39 -0.39 -4.19 16 27 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 28 H 0.09 1.27 6.60 -51.93 -0.34 0.93 16 29 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.07 1.01 7.13 -51.93 -0.37 0.63 16 31 H 0.40 2.33 8.80 -40.82 -0.36 1.97 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.11 0.27 6.04 -51.93 -0.31 -0.04 16 36 H 0.09 0.73 7.94 -51.93 -0.41 0.31 16 37 H 0.09 0.74 7.64 -51.93 -0.40 0.34 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 3.02 5.71 -52.49 -0.30 2.72 16 40 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -35.30 346.92 -7.14 -42.44 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.27 Total: 2.98 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.34 Total: -9.61 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.05 Total: -36.25 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.16 Total: -21.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.30 -7.14 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110692542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.268 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds