Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 109.56768 * 2 1 4 4 C 1.50434 * 109.57033 * 239.63955 * 2 1 3 5 5 O 1.21282 * 118.48964 * 47.48919 * 4 2 1 6 6 N 1.33384 * 123.02455 * 227.46835 * 4 2 1 7 7 C 1.45646 * 124.58689 * 4.32187 * 6 4 2 8 8 C 1.53464 * 110.74101 * 337.97384 * 7 6 4 9 9 N 1.47046 * 109.57110 * 120.22975 * 2 1 3 10 10 C 1.34782 * 121.35116 * 342.54038 * 9 2 1 11 11 O 1.21279 * 120.00069 * 4.64672 * 10 9 2 12 12 C 1.50703 * 119.99834 * 184.64429 * 10 9 2 13 13 C 1.50703 * 109.46813 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.92891 * 90.00201 * 13 12 10 15 15 C 1.38098 * 120.06839 * 179.97438 * 14 13 12 16 16 C 1.38885 * 119.93223 * 0.02562 * 15 14 13 17 17 O 1.35743 * 120.06990 * 180.02562 * 16 15 14 18 18 C 1.34827 * 117.00453 * 354.13942 * 17 16 15 19 19 H 1.08001 * 119.99437 * 355.17974 * 18 17 16 20 20 C 1.38659 * 120.00512 * 175.18296 * 18 17 16 21 21 N 1.31551 * 120.00049 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99855 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47108 * 89.99690 * 22 20 18 24 24 H 1.48493 * 109.47347 * 209.99884 * 22 20 18 25 25 H 1.48500 * 109.46923 * 330.00048 * 22 20 18 26 26 C 1.38885 * 119.85748 * 0.27446 * 16 15 14 27 27 C 1.38098 * 119.93098 * 359.40666 * 26 16 15 28 28 H 1.09006 * 109.47414 * 310.26379 * 1 2 3 29 29 H 1.09004 * 109.47536 * 70.26254 * 1 2 3 30 30 H 1.08999 * 109.47517 * 190.26562 * 1 2 3 31 31 H 0.96998 * 117.70543 * 184.34054 * 6 4 2 32 32 H 1.08994 * 109.21993 * 98.43410 * 7 6 4 33 33 H 1.09001 * 109.21166 * 217.80792 * 7 6 4 34 34 H 1.09004 * 109.85080 * 287.32430 * 8 7 6 35 35 H 1.08993 * 109.84160 * 166.50751 * 8 7 6 36 36 H 1.09000 * 109.47257 * 60.00646 * 12 10 9 37 37 H 1.08998 * 109.47270 * 299.99631 * 12 10 9 38 38 H 1.07998 * 119.96811 * 359.97438 * 14 13 12 39 39 H 1.08001 * 120.03649 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00059 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.02853 * 179.72508 * 26 16 15 42 42 H 1.08005 * 119.96549 * 180.31947 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0338 -0.7164 -1.2231 5 8 1.5489 -0.4359 -2.2987 6 7 2.9896 -1.6457 -1.1790 7 6 3.5986 -2.1481 0.0449 8 6 3.4267 -1.1413 1.1904 9 7 2.0225 -0.6976 1.1971 10 6 1.2228 -0.9170 2.2596 11 8 0.0500 -0.6125 2.2091 12 6 1.7861 -1.5408 3.5105 13 6 0.6940 -1.6757 4.5402 14 6 -0.0711 -2.8269 4.5878 15 6 -1.0723 -2.9538 5.5304 16 6 -1.3109 -1.9237 6.4310 17 8 -2.2939 -2.0457 7.3591 18 6 -3.0812 -3.1371 7.2770 19 1 -2.9656 -3.8255 6.4530 20 6 -4.0394 -3.3756 8.2505 21 7 -4.8079 -4.4403 8.1702 22 14 -4.2398 -2.1844 9.6754 23 1 -5.2288 -1.1384 9.3107 24 1 -4.7173 -2.9211 10.8731 25 1 -2.9326 -1.5467 9.9750 26 6 -0.5449 -0.7664 6.3765 27 6 0.4592 -0.6483 5.4357 28 1 -0.3634 0.6642 0.7842 29 1 -0.3634 0.3471 -0.9673 30 1 -0.3634 -1.0112 0.1831 31 1 3.3011 -2.0125 -2.0212 32 1 3.1265 -3.0913 0.3196 33 1 4.6620 -2.3156 -0.1261 34 1 4.0822 -0.2849 1.0320 35 1 3.6664 -1.6179 2.1408 36 1 2.5812 -0.9085 3.9056 37 1 2.1883 -2.5263 3.2757 38 1 0.1146 -3.6274 3.8870 39 1 -1.6692 -3.8531 5.5674 40 1 -5.4779 -4.6074 8.8514 41 1 -0.7310 0.0381 7.0725 42 1 1.0586 0.2493 5.3963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110692542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -76.275322 kcal Electronic energy + Delta-G solvation = -26219.197200 eV Core-core repulsion = 22357.710928 eV Total energy + Delta-G solvation = -3861.486272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01651 -40.91920 -40.16791 -38.36705 -37.51452 -35.34714 -34.53954 -33.69304 -32.02924 -31.75512 -29.59658 -28.28683 -26.91183 -26.04323 -24.10730 -23.68190 -22.57424 -21.24276 -19.90190 -19.69992 -19.07072 -18.45289 -18.32915 -17.22241 -16.95851 -16.66809 -16.56306 -16.15611 -15.82567 -15.70481 -15.59080 -15.20845 -14.92595 -14.81692 -14.32182 -14.22701 -14.07223 -13.92395 -13.84586 -13.37326 -13.12541 -12.99510 -12.84898 -12.66657 -12.56074 -12.43550 -12.37216 -12.21609 -11.91945 -11.45185 -11.28716 -10.90791 -10.27767 -10.16317 -9.75809 -9.68177 -8.95474 -8.50546 -6.22850 0.61761 0.63502 1.30551 1.35404 1.40398 1.51246 1.68036 1.77815 2.22430 2.27863 2.76977 3.11038 3.14610 3.39672 3.67579 3.85486 3.93436 4.05085 4.08435 4.11084 4.19164 4.26702 4.40152 4.49885 4.60004 4.68283 4.73454 4.76042 4.83256 4.86507 4.98026 5.01526 5.15761 5.28271 5.38272 5.40983 5.58846 5.75453 5.76629 5.81299 5.92633 6.15939 6.25880 6.38679 6.83878 7.04821 7.25294 7.59468 8.61510 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.002575 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.276596 B =10872.027894 C =11046.620988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.138 3.862 3 H 0.120 0.880 4 C 0.512 3.488 5 O -0.591 6.591 6 N -0.708 5.708 7 C 0.087 3.913 8 C 0.083 3.917 9 N -0.618 5.618 10 C 0.515 3.485 11 O -0.560 6.560 12 C -0.077 4.077 13 C -0.136 4.136 14 C -0.063 4.063 15 C -0.240 4.240 16 C 0.117 3.883 17 O -0.247 6.247 18 C -0.398 4.398 19 H 0.077 0.923 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.056 4.056 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.406 0.594 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.285 0.715 41 H 0.126 0.874 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.391 7.017 -14.097 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.031 3.969 3 H 0.137 0.863 4 C 0.298 3.702 5 O -0.472 6.472 6 N -0.359 5.359 7 C -0.037 4.037 8 C -0.039 4.039 9 N -0.355 5.355 10 C 0.305 3.695 11 O -0.437 6.437 12 C -0.115 4.115 13 C -0.137 4.137 14 C -0.081 4.081 15 C -0.260 4.260 16 C 0.068 3.932 17 O -0.155 6.155 18 C -0.474 4.474 19 H 0.094 0.906 20 C -0.190 4.190 21 N -0.567 5.567 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.190 1.190 25 H -0.185 1.185 26 C -0.214 4.214 27 C -0.074 4.074 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.243 0.757 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 25.228 7.404 -14.163 29.864 hybrid contribution -1.026 -0.446 0.028 1.119 sum 24.202 6.958 -14.135 28.878 Atomic orbital electron populations 1.21872 0.92029 1.02719 1.01377 1.21241 0.96529 0.97194 0.81933 0.86303 1.20513 0.79160 0.80099 0.90467 1.90764 1.58364 1.66541 1.31489 1.45400 1.38293 1.40040 1.12124 1.22225 1.01216 0.97233 0.83042 1.22689 0.79944 0.99572 1.01657 1.48411 1.13490 1.58930 1.14704 1.21298 0.85730 0.77725 0.84751 1.90817 1.18484 1.51883 1.82545 1.20643 0.96973 1.04825 0.89106 1.19297 1.00565 0.94584 0.99246 1.20900 0.93256 0.98251 0.95742 1.21248 1.03590 1.00085 1.01043 1.19719 0.88709 0.95215 0.89533 1.83507 1.40037 1.43216 1.48718 1.20680 1.14095 1.01269 1.11392 0.90575 1.25309 0.94563 0.98378 1.00749 1.69734 1.22150 1.27570 1.37202 0.85183 0.79338 0.78344 0.77621 1.19255 1.19039 1.18520 1.20518 1.00036 0.96331 1.04494 1.20957 0.95350 0.98488 0.92628 0.90510 0.92866 0.93946 0.75747 0.90646 0.84972 0.87719 0.84040 0.84048 0.85098 0.85033 0.87957 0.90571 0.85581 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 7.59 71.98 0.55 -2.63 16 2 C 0.14 2.54 3.67 44.05 0.16 2.70 16 3 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 4 C 0.51 9.92 7.35 87.79 0.65 10.56 16 5 O -0.59 -16.79 17.00 -3.04 -0.05 -16.84 16 6 N -0.71 -7.40 5.42 -466.30 -2.53 -9.93 16 7 C 0.09 0.18 7.35 86.70 0.64 0.81 16 8 C 0.08 0.18 6.48 86.39 0.56 0.74 16 9 N -0.62 -8.37 2.97 -798.32 -2.37 -10.74 16 10 C 0.51 10.35 7.54 87.66 0.66 11.01 16 11 O -0.56 -17.72 11.92 -3.03 -0.04 -17.76 16 12 C -0.08 -1.10 4.21 29.10 0.12 -0.98 16 13 C -0.14 -3.72 4.38 -19.83 -0.09 -3.81 16 14 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 15 C -0.24 -10.91 9.14 22.39 0.20 -10.71 16 16 C 0.12 5.65 6.65 22.58 0.15 5.80 16 17 O -0.25 -13.87 8.59 -22.63 -0.19 -14.06 16 18 C -0.40 -24.25 9.91 67.92 0.67 -23.57 16 19 H 0.08 4.89 5.52 -2.91 -0.02 4.88 16 20 C 0.01 0.48 5.49 84.84 0.47 0.94 16 21 N -0.93 -56.66 13.96 21.61 0.30 -56.36 16 22 Si 0.97 46.50 28.62 68.60 1.96 48.46 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 26 C -0.19 -7.56 9.99 22.39 0.22 -7.33 16 27 C -0.06 -1.66 9.69 22.25 0.22 -1.45 16 28 H 0.08 2.20 6.60 -2.38 -0.02 2.18 16 29 H 0.05 1.42 7.56 -2.39 -0.02 1.40 16 30 H 0.04 1.29 7.13 -2.39 -0.02 1.27 16 31 H 0.41 3.50 8.80 -92.71 -0.82 2.69 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.14 -0.51 6.04 -2.39 -0.01 -0.52 16 36 H 0.14 0.90 7.94 -2.39 -0.02 0.88 16 37 H 0.13 1.05 7.64 -2.39 -0.02 1.03 16 38 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.10 5.17 5.71 -2.91 -0.02 5.15 16 40 H 0.28 15.93 8.31 -92.70 -0.77 15.16 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -87.50 346.92 2.73 -84.77 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.25 Total: 12.33 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 5.40 Total: -19.87 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -4.60 Total: -77.03 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.28 Total: -48.66 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.96 Total: 48.46 kcal Total: -87.50 2.73 -84.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110692542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.496 kcal (2) G-P(sol) polarization free energy of solvation -87.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds