Wall clock time and date at job start Tue Mar 31 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.66368 * 2 1 4 4 C 1.50441 * 109.56899 * 120.30339 * 2 1 3 5 5 O 1.21276 * 118.48580 * 287.13005 * 4 2 1 6 6 N 1.33382 * 123.02217 * 107.11671 * 4 2 1 7 7 C 1.45648 * 124.59227 * 4.31248 * 6 4 2 8 8 C 1.53469 * 110.73822 * 337.98343 * 7 6 4 9 9 N 1.47058 * 109.56531 * 239.70724 * 2 1 3 10 10 C 1.34772 * 121.35267 * 102.89087 * 9 2 1 11 11 O 1.21282 * 120.00091 * 0.02562 * 10 9 2 12 12 C 1.50697 * 120.00082 * 180.02562 * 10 9 2 13 13 C 1.50700 * 109.47396 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93240 * 269.73011 * 13 12 10 15 15 C 1.38106 * 120.06905 * 180.27764 * 14 13 12 16 16 C 1.38880 * 119.92768 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06255 * 180.02562 * 16 15 14 18 18 C 1.34823 * 116.99547 * 174.44487 * 17 16 15 19 19 H 1.07999 * 120.00661 * 5.04963 * 18 17 16 20 20 C 1.38655 * 119.99715 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99953 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47004 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47194 * 119.99560 * 22 20 18 25 25 H 1.48498 * 109.47442 * 239.99965 * 22 20 18 26 26 C 1.38872 * 119.86682 * 359.97438 * 16 15 14 27 27 C 1.38101 * 119.92866 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47292 * 180.29693 * 1 2 3 29 29 H 1.09004 * 109.46879 * 300.28793 * 1 2 3 30 30 H 1.08994 * 109.47618 * 60.29114 * 1 2 3 31 31 H 0.97002 * 117.70137 * 184.34090 * 6 4 2 32 32 H 1.09001 * 109.21474 * 98.43438 * 7 6 4 33 33 H 1.08994 * 109.21574 * 217.81690 * 7 6 4 34 34 H 1.09001 * 109.84933 * 287.31554 * 8 7 6 35 35 H 1.09002 * 109.84165 * 166.50425 * 8 7 6 36 36 H 1.08997 * 109.47077 * 60.00227 * 12 10 9 37 37 H 1.08998 * 109.47344 * 300.00004 * 12 10 9 38 38 H 1.07995 * 119.96238 * 0.27333 * 14 13 12 39 39 H 1.07996 * 120.02829 * 179.97438 * 15 14 13 40 40 H 0.97006 * 120.00126 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03833 * 180.02562 * 26 16 15 42 42 H 1.08002 * 119.96374 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8967 1.0264 0.0000 4 6 2.0338 -0.7152 1.2238 5 8 1.9317 -0.1638 2.2992 6 7 2.5874 -1.9280 1.1807 7 6 2.8568 -2.6709 -0.0428 8 6 1.9677 -2.1706 -1.1893 9 7 2.0224 -0.6990 -1.1965 10 6 2.4992 -0.0201 -2.2587 11 8 2.5287 1.1922 -2.2401 12 6 2.9957 -0.7674 -3.4694 13 6 3.4707 0.2166 -4.5073 14 6 2.5886 0.6964 -5.4582 15 6 3.0223 1.5939 -6.4141 16 6 4.3457 2.0148 -6.4194 17 8 4.7749 2.8973 -7.3575 18 6 6.0383 3.3523 -7.2371 19 1 6.6855 2.9527 -6.4705 20 6 6.5066 4.3336 -8.0976 21 7 5.7184 4.8201 -9.0317 22 14 8.2569 4.9646 -7.9304 23 1 8.9318 4.2612 -6.8101 24 1 8.9973 4.7108 -9.1925 25 1 8.2330 6.4237 -7.6554 26 6 5.2289 1.5320 -5.4626 27 6 4.7891 0.6347 -4.5094 28 1 -0.3634 -1.0276 0.0053 29 1 -0.3633 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8925 31 1 2.8271 -2.3445 2.0233 32 1 3.9041 -2.5438 -0.3165 33 1 2.6565 -3.7286 0.1284 34 1 0.9405 -2.4997 -1.0318 35 1 2.3367 -2.5570 -2.1393 36 1 2.1857 -1.3683 -3.8829 37 1 3.8208 -1.4188 -3.1813 38 1 1.5595 0.3689 -5.4532 39 1 2.3329 1.9678 -7.1566 40 1 6.0462 5.5064 -9.6339 41 1 6.2585 1.8578 -5.4640 42 1 5.4753 0.2592 -3.7648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110692545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:50 Heat of formation + Delta-G solvation = -63.304398 kcal Electronic energy + Delta-G solvation = -26027.185458 eV Core-core repulsion = 22166.261648 eV Total energy + Delta-G solvation = -3860.923810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14343 -39.51641 -38.74521 -36.93137 -36.41481 -34.72175 -32.71931 -32.17041 -30.88386 -30.14536 -29.11693 -26.77720 -25.31679 -24.73709 -24.10829 -21.97441 -21.32730 -20.03008 -18.87774 -17.97235 -17.84415 -17.55843 -16.93452 -16.67984 -16.16715 -15.39905 -15.22105 -14.67851 -14.54625 -14.43891 -14.28311 -14.02250 -13.69960 -13.53915 -13.25388 -13.03614 -12.74243 -12.70190 -12.52180 -12.50043 -12.16862 -11.93038 -11.79095 -11.52702 -11.26679 -10.86393 -10.76994 -10.59986 -10.49543 -10.40750 -9.78671 -9.59945 -9.31241 -8.99586 -8.81204 -8.14638 -7.16191 -6.43441 -4.01903 2.15442 2.21994 2.25828 2.53172 2.60165 2.87624 3.13636 3.15784 3.20938 3.97228 3.98444 4.14774 4.40480 4.53211 4.62509 4.73332 4.80898 4.87963 4.97831 5.09000 5.18443 5.19870 5.24608 5.30810 5.31904 5.50092 5.58723 5.71609 5.77101 5.84200 5.95683 6.22480 6.31509 6.42110 6.70056 6.80906 6.91076 7.04402 7.11634 7.24788 7.36905 7.46152 7.74405 7.84289 8.01919 8.10760 9.02463 9.72684 10.74733 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.002528 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.271677 B =11073.977280 C =11338.410446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.130 0.870 4 C 0.520 3.480 5 O -0.545 6.545 6 N -0.719 5.719 7 C 0.094 3.906 8 C 0.091 3.909 9 N -0.626 5.626 10 C 0.516 3.484 11 O -0.509 6.509 12 C -0.076 4.076 13 C -0.174 4.174 14 C -0.058 4.058 15 C -0.191 4.191 16 C 0.158 3.842 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.055 4.055 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.127 0.873 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -19.063 15.709 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.147 0.853 4 C 0.305 3.695 5 O -0.421 6.421 6 N -0.371 5.371 7 C -0.032 4.032 8 C -0.033 4.033 9 N -0.365 5.365 10 C 0.305 3.695 11 O -0.381 6.381 12 C -0.116 4.116 13 C -0.176 4.176 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.104 3.896 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.252 4.252 27 C -0.074 4.074 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.670 -17.677 15.632 24.813 hybrid contribution 1.054 -0.038 0.454 1.148 sum -6.616 -17.714 16.086 24.826 Atomic orbital electron populations 1.21993 0.92129 1.02758 1.04037 1.21280 0.96265 0.98908 0.81363 0.85253 1.20342 0.76879 0.81225 0.91017 1.90790 1.56582 1.64673 1.30070 1.45358 1.63179 1.18229 1.10331 1.21884 1.00360 0.96249 0.84675 1.22188 1.00822 0.80412 0.99859 1.48502 1.64994 1.06408 1.16554 1.21187 0.76474 0.88417 0.83400 1.90772 1.53103 1.13883 1.80333 1.20435 1.01621 0.97587 0.91919 1.18607 0.94609 1.04932 0.99421 1.20387 0.97514 0.95853 0.93916 1.20157 0.93943 1.03969 1.03009 1.19385 0.92529 0.89558 0.88143 1.83976 1.31228 1.50803 1.42093 1.21379 0.86155 1.20850 1.18306 0.89010 1.25291 1.00104 0.95754 0.95393 1.70048 1.35860 1.26741 1.17126 0.85649 0.80338 0.78909 0.78539 1.19095 1.20155 1.20131 1.21105 1.00870 1.03803 0.99401 1.20496 0.94439 0.95859 0.96566 0.92166 0.90398 0.90556 0.76460 0.90868 0.89125 0.90030 0.87175 0.88765 0.88900 0.87383 0.86522 0.92080 0.85578 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.38 37.15 0.35 -0.95 16 2 C 0.13 1.36 3.06 -68.91 -0.21 1.15 16 3 H 0.13 1.71 7.23 -51.93 -0.38 1.34 16 4 C 0.52 5.56 7.10 -11.73 -0.08 5.48 16 5 O -0.54 -7.87 17.80 5.56 0.10 -7.77 16 6 N -0.72 -4.99 5.42 -61.07 -0.33 -5.32 16 7 C 0.09 0.36 7.35 -4.26 -0.03 0.33 16 8 C 0.09 0.43 6.35 -3.38 -0.02 0.40 16 9 N -0.63 -5.87 2.62 -166.25 -0.44 -6.30 16 10 C 0.52 6.68 7.72 -10.99 -0.08 6.59 16 11 O -0.51 -9.27 15.59 5.56 0.09 -9.18 16 12 C -0.08 -0.84 4.20 -29.04 -0.12 -0.97 16 13 C -0.17 -2.90 4.38 -104.57 -0.46 -3.35 16 14 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 15 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 16 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 17 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 18 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 27 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 28 H 0.06 0.41 7.49 -51.93 -0.39 0.03 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.40 2.29 8.80 -40.82 -0.36 1.94 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.08 0.28 7.49 -51.93 -0.39 -0.10 16 35 H 0.11 0.30 6.03 -51.93 -0.31 -0.01 16 36 H 0.09 0.78 7.76 -51.93 -0.40 0.37 16 37 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -37.13 353.94 -7.06 -44.19 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.30 Total: 3.59 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.25 Total: -10.35 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.01 Total: -36.44 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.19 Total: -22.10 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.13 -7.06 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110692545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.112 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds