Wall clock time and date at job start Tue Mar 31 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.66368 * 2 1 4 4 C 1.50441 * 109.56899 * 120.30339 * 2 1 3 5 5 O 1.21276 * 118.48580 * 287.13005 * 4 2 1 6 6 N 1.33382 * 123.02217 * 107.11671 * 4 2 1 7 7 C 1.45648 * 124.59227 * 4.31248 * 6 4 2 8 8 C 1.53469 * 110.73822 * 337.98343 * 7 6 4 9 9 N 1.47058 * 109.56531 * 239.70724 * 2 1 3 10 10 C 1.34772 * 121.35267 * 102.89087 * 9 2 1 11 11 O 1.21282 * 120.00091 * 0.02562 * 10 9 2 12 12 C 1.50697 * 120.00082 * 180.02562 * 10 9 2 13 13 C 1.50700 * 109.47396 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93240 * 269.73011 * 13 12 10 15 15 C 1.38106 * 120.06905 * 180.27764 * 14 13 12 16 16 C 1.38880 * 119.92768 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06255 * 180.02562 * 16 15 14 18 18 C 1.34823 * 116.99547 * 174.44487 * 17 16 15 19 19 H 1.07999 * 120.00661 * 5.04963 * 18 17 16 20 20 C 1.38655 * 119.99715 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99953 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47004 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47194 * 119.99560 * 22 20 18 25 25 H 1.48498 * 109.47442 * 239.99965 * 22 20 18 26 26 C 1.38872 * 119.86682 * 359.97438 * 16 15 14 27 27 C 1.38101 * 119.92866 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47292 * 180.29693 * 1 2 3 29 29 H 1.09004 * 109.46879 * 300.28793 * 1 2 3 30 30 H 1.08994 * 109.47618 * 60.29114 * 1 2 3 31 31 H 0.97002 * 117.70137 * 184.34090 * 6 4 2 32 32 H 1.09001 * 109.21474 * 98.43438 * 7 6 4 33 33 H 1.08994 * 109.21574 * 217.81690 * 7 6 4 34 34 H 1.09001 * 109.84933 * 287.31554 * 8 7 6 35 35 H 1.09002 * 109.84165 * 166.50425 * 8 7 6 36 36 H 1.08997 * 109.47077 * 60.00227 * 12 10 9 37 37 H 1.08998 * 109.47344 * 300.00004 * 12 10 9 38 38 H 1.07995 * 119.96238 * 0.27333 * 14 13 12 39 39 H 1.07996 * 120.02829 * 179.97438 * 15 14 13 40 40 H 0.97006 * 120.00126 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03833 * 180.02562 * 26 16 15 42 42 H 1.08002 * 119.96374 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8967 1.0264 0.0000 4 6 2.0338 -0.7152 1.2238 5 8 1.9317 -0.1638 2.2992 6 7 2.5874 -1.9280 1.1807 7 6 2.8568 -2.6709 -0.0428 8 6 1.9677 -2.1706 -1.1893 9 7 2.0224 -0.6990 -1.1965 10 6 2.4992 -0.0201 -2.2587 11 8 2.5287 1.1922 -2.2401 12 6 2.9957 -0.7674 -3.4694 13 6 3.4707 0.2166 -4.5073 14 6 2.5886 0.6964 -5.4582 15 6 3.0223 1.5939 -6.4141 16 6 4.3457 2.0148 -6.4194 17 8 4.7749 2.8973 -7.3575 18 6 6.0383 3.3523 -7.2371 19 1 6.6855 2.9527 -6.4705 20 6 6.5066 4.3336 -8.0976 21 7 5.7184 4.8201 -9.0317 22 14 8.2569 4.9646 -7.9304 23 1 8.9318 4.2612 -6.8101 24 1 8.9973 4.7108 -9.1925 25 1 8.2330 6.4237 -7.6554 26 6 5.2289 1.5320 -5.4626 27 6 4.7891 0.6347 -4.5094 28 1 -0.3634 -1.0276 0.0053 29 1 -0.3633 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8925 31 1 2.8271 -2.3445 2.0233 32 1 3.9041 -2.5438 -0.3165 33 1 2.6565 -3.7286 0.1284 34 1 0.9405 -2.4997 -1.0318 35 1 2.3367 -2.5570 -2.1393 36 1 2.1857 -1.3683 -3.8829 37 1 3.8208 -1.4188 -3.1813 38 1 1.5595 0.3689 -5.4532 39 1 2.3329 1.9678 -7.1566 40 1 6.0462 5.5064 -9.6339 41 1 6.2585 1.8578 -5.4640 42 1 5.4753 0.2592 -3.7648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110692545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:50 Heat of formation + Delta-G solvation = -91.794182 kcal Electronic energy + Delta-G solvation = -26028.420868 eV Core-core repulsion = 22166.261648 eV Total energy + Delta-G solvation = -3862.159220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93603 -40.85171 -40.12022 -38.26820 -37.55221 -35.43916 -34.41640 -33.45648 -32.03498 -31.74310 -29.73043 -28.19849 -27.05966 -25.64942 -24.65506 -23.62144 -22.67804 -21.13569 -19.84292 -19.49536 -18.84554 -18.65842 -18.26076 -17.45171 -16.89264 -16.54610 -16.40808 -16.15322 -15.93350 -15.68159 -15.48733 -15.19357 -15.04770 -14.80372 -14.40008 -14.25122 -14.08587 -13.65807 -13.58722 -13.30704 -13.19102 -12.96325 -12.78917 -12.68067 -12.56462 -12.46399 -12.25502 -12.19445 -12.09784 -11.39489 -11.16602 -10.89863 -10.72351 -10.18793 -9.76236 -9.73734 -8.88509 -8.47667 -6.15544 0.63760 0.67683 1.33556 1.38765 1.42097 1.52168 1.63948 1.76956 2.17140 2.20165 2.83349 3.15884 3.37988 3.53973 3.69742 3.85038 3.97541 4.00630 4.07735 4.10455 4.20718 4.26088 4.42635 4.50761 4.59193 4.62966 4.70924 4.74465 4.78399 4.82543 4.94591 5.10714 5.11243 5.15417 5.27305 5.32688 5.58752 5.73517 5.75490 5.79142 6.03548 6.14764 6.22893 6.35607 6.97310 7.03306 7.19119 7.79233 8.76145 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.002528 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.271677 B =11073.977280 C =11338.410446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.126 3.874 3 H 0.092 0.908 4 C 0.518 3.482 5 O -0.594 6.594 6 N -0.706 5.706 7 C 0.087 3.913 8 C 0.079 3.921 9 N -0.615 5.615 10 C 0.516 3.484 11 O -0.577 6.577 12 C -0.073 4.073 13 C -0.146 4.146 14 C -0.055 4.055 15 C -0.208 4.208 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.246 4.246 27 C -0.060 4.060 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.408 0.592 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 -23.674 17.775 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 H 0.110 0.890 4 C 0.304 3.696 5 O -0.475 6.475 6 N -0.356 5.356 7 C -0.036 4.036 8 C -0.042 4.042 9 N -0.351 5.351 10 C 0.306 3.694 11 O -0.455 6.455 12 C -0.111 4.111 13 C -0.147 4.147 14 C -0.073 4.073 15 C -0.227 4.227 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.176 1.176 24 H -0.189 1.189 25 H -0.195 1.195 26 C -0.265 4.265 27 C -0.078 4.078 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.244 0.756 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.842 -22.436 17.737 29.656 hybrid contribution 0.885 1.054 0.070 1.378 sum -6.957 -21.382 17.808 28.683 Atomic orbital electron populations 1.21925 0.90665 1.04185 1.03356 1.21130 0.97405 0.97407 0.82141 0.89015 1.20306 0.77048 0.82148 0.90087 1.90769 1.58926 1.66243 1.31534 1.45379 1.61081 1.16938 1.12213 1.22239 1.00592 0.97945 0.82857 1.22720 1.02728 0.76844 1.01877 1.48459 1.63229 1.08521 1.14870 1.21421 0.75934 0.87623 0.84384 1.90778 1.56187 1.16805 1.81713 1.20606 1.04704 0.96431 0.89401 1.19271 0.93319 1.03243 0.98913 1.20901 0.99723 0.94152 0.92539 1.20462 0.92881 1.05090 1.04258 1.19959 0.94379 0.90328 0.89167 1.83935 1.31779 1.53581 1.44856 1.21847 0.86657 1.21500 1.18873 0.88304 1.26596 1.05131 0.95661 0.94755 1.70191 1.38551 1.28372 1.18927 0.84530 0.74188 0.78224 0.79245 1.17565 1.18948 1.19524 1.21226 1.00202 1.04989 1.00126 1.20939 0.96263 0.94653 0.95910 0.89578 0.91158 0.91213 0.75599 0.90203 0.84850 0.87901 0.83936 0.84130 0.84618 0.83267 0.87101 0.91845 0.86759 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.38 71.98 0.67 -1.56 16 2 C 0.13 2.50 3.06 44.06 0.13 2.64 16 3 H 0.09 2.54 7.23 -2.39 -0.02 2.52 16 4 C 0.52 10.23 7.10 87.79 0.62 10.85 16 5 O -0.59 -17.15 17.80 -3.02 -0.05 -17.21 16 6 N -0.71 -7.20 5.42 -466.29 -2.53 -9.73 16 7 C 0.09 0.15 7.35 86.70 0.64 0.79 16 8 C 0.08 0.22 6.35 86.39 0.55 0.77 16 9 N -0.61 -9.04 2.62 -798.29 -2.09 -11.13 16 10 C 0.52 11.38 7.72 87.66 0.68 12.06 16 11 O -0.58 -20.39 15.59 -3.04 -0.05 -20.44 16 12 C -0.07 -1.15 4.20 29.10 0.12 -1.03 16 13 C -0.15 -4.31 4.38 -19.83 -0.09 -4.40 16 14 C -0.06 -1.84 9.69 22.25 0.22 -1.62 16 15 C -0.21 -9.14 9.99 22.39 0.22 -8.92 16 16 C 0.11 5.79 6.65 22.58 0.15 5.94 16 17 O -0.23 -14.66 9.76 -22.73 -0.22 -14.88 16 18 C -0.41 -24.90 9.49 67.92 0.64 -24.26 16 19 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 21 N -0.92 -58.08 13.67 21.61 0.30 -57.78 16 22 Si 1.02 44.22 29.55 68.60 2.03 46.25 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 C -0.25 -11.17 9.17 22.39 0.21 -10.96 16 27 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 28 H 0.09 0.87 7.49 -2.39 -0.02 0.86 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.41 3.31 8.80 -92.71 -0.82 2.49 16 32 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H 0.10 -0.02 7.49 -2.39 -0.02 -0.04 16 35 H 0.14 -0.45 6.03 -2.39 -0.01 -0.47 16 36 H 0.14 1.10 7.76 -2.39 -0.02 1.08 16 37 H 0.14 1.16 7.83 -2.39 -0.02 1.14 16 38 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 39 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 41 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -93.46 353.94 3.08 -90.38 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.25 Total: 17.04 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 5.45 Total: -22.51 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -4.32 Total: -78.63 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.32 Total: -52.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -93.46 3.08 -90.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110692545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.418 kcal (2) G-P(sol) polarization free energy of solvation -93.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds