Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.65914 * 2 1 4 4 C 1.50429 * 109.56803 * 239.70446 * 2 1 3 5 5 O 1.21281 * 118.49086 * 47.49279 * 4 2 1 6 6 N 1.33386 * 123.02188 * 227.46658 * 4 2 1 7 7 C 1.45642 * 124.58959 * 4.32428 * 6 4 2 8 8 C 1.53469 * 110.73906 * 337.97475 * 7 6 4 9 9 N 1.47047 * 109.56628 * 120.29390 * 2 1 3 10 10 C 1.34777 * 121.35779 * 342.54136 * 9 2 1 11 11 O 1.21279 * 119.99665 * 4.93310 * 10 9 2 12 12 C 1.50696 * 120.00557 * 184.93135 * 10 9 2 13 13 C 1.50692 * 109.47688 * 179.97438 * 12 10 9 14 14 C 1.38323 * 119.97002 * 270.23567 * 13 12 10 15 15 C 1.38279 * 120.14001 * 180.27521 * 14 13 12 16 16 C 1.38120 * 120.06908 * 359.76669 * 15 14 13 17 17 C 1.38859 * 119.93117 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.06905 * 180.02562 * 17 16 15 19 19 C 1.34827 * 117.00137 * 354.24515 * 18 17 16 20 20 H 1.08001 * 119.99655 * 354.77298 * 19 18 17 21 21 C 1.38652 * 120.00302 * 174.77229 * 19 18 17 22 22 N 1.31559 * 119.99892 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00287 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47442 * 59.99361 * 23 21 19 25 25 H 1.48502 * 109.47209 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46563 * 299.99663 * 23 21 19 27 27 C 1.38078 * 119.96364 * 89.99927 * 13 12 10 28 28 H 1.08999 * 109.47290 * 308.74379 * 1 2 3 29 29 H 1.08996 * 109.46909 * 68.74472 * 1 2 3 30 30 H 1.09000 * 109.47026 * 188.74226 * 1 2 3 31 31 H 0.97000 * 117.70036 * 184.29333 * 6 4 2 32 32 H 1.08999 * 109.21845 * 98.43036 * 7 6 4 33 33 H 1.09000 * 109.21494 * 217.81084 * 7 6 4 34 34 H 1.09004 * 109.85179 * 287.32349 * 8 7 6 35 35 H 1.08997 * 109.84003 * 166.50675 * 8 7 6 36 36 H 1.09000 * 109.47121 * 59.99430 * 12 10 9 37 37 H 1.09007 * 109.47226 * 300.00368 * 12 10 9 38 38 H 1.07998 * 119.92871 * 0.02562 * 14 13 12 39 39 H 1.07996 * 119.96553 * 179.74621 * 15 14 13 40 40 H 1.08003 * 120.03433 * 179.97438 * 16 15 14 41 41 H 0.96997 * 119.99923 * 179.97438 * 22 21 19 42 42 H 1.08005 * 120.03491 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0339 -0.7150 -1.2238 5 8 1.5490 -0.4332 -2.2992 6 7 2.9897 -1.6444 -1.1808 7 6 3.5987 -2.1481 0.0425 8 6 3.4268 -1.1426 1.1891 9 7 2.0225 -0.6989 1.1964 10 6 1.2229 -0.9196 2.2586 11 8 0.0489 -0.6198 2.2065 12 6 1.7875 -1.5389 3.5111 13 6 0.6952 -1.6763 4.5401 14 6 0.4514 -0.6464 5.4308 15 6 -0.5463 -0.7710 6.3801 16 6 -1.3059 -1.9231 6.4386 17 6 -1.0673 -2.9566 5.5424 18 8 -1.8126 -4.0899 5.5970 19 6 -2.6868 -4.1990 6.6176 20 1 -2.7105 -3.4457 7.3911 21 6 -3.5552 -5.2784 6.6742 22 7 -3.5266 -6.1958 5.7317 23 14 -4.7669 -5.4293 8.0879 24 1 -5.6640 -4.2460 8.0995 25 1 -5.5758 -6.6628 7.9171 26 1 -4.0234 -5.4993 9.3715 27 6 -0.0646 -2.8281 4.5897 28 1 -0.3634 0.6431 0.8015 29 1 -0.3633 0.3725 -0.9577 30 1 -0.3633 -1.0157 0.1562 31 1 3.3007 -2.0107 -2.0235 32 1 3.1266 -3.0917 0.3162 33 1 4.6621 -2.3154 -0.1287 34 1 4.0822 -0.2860 1.0317 35 1 3.6665 -1.6203 2.1391 36 1 2.5798 -0.9028 3.9056 37 1 2.1939 -2.5232 3.2784 38 1 1.0442 0.2553 5.3872 39 1 -0.7315 0.0331 7.0768 40 1 -2.0848 -2.0200 7.1805 41 1 -4.1339 -6.9511 5.7715 42 1 0.1233 -3.6302 3.8913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126149381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -50.752305 kcal Electronic energy + Delta-G solvation = -26370.616218 eV Core-core repulsion = 22510.236707 eV Total energy + Delta-G solvation = -3860.379511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17252 -39.51180 -38.74613 -36.84378 -36.43919 -34.53898 -32.88047 -32.22782 -31.20313 -29.25179 -28.83746 -27.00653 -25.45024 -25.10409 -23.47240 -21.75535 -21.33933 -20.30637 -19.04847 -17.77130 -17.66222 -17.42686 -16.89775 -16.29223 -16.08698 -15.63979 -15.35217 -14.98523 -14.55516 -14.38523 -14.20833 -13.91966 -13.53990 -13.49270 -13.15694 -13.05952 -12.61188 -12.48971 -12.40696 -12.19940 -12.12161 -11.85552 -11.66069 -11.50581 -11.23766 -10.84173 -10.74718 -10.60356 -10.51071 -10.42635 -9.52448 -9.35413 -9.22862 -8.88531 -8.80340 -8.05519 -7.20017 -6.41568 -4.00734 2.04734 2.27225 2.40044 2.56714 2.59870 2.94840 3.15013 3.16625 3.18998 3.99080 4.05538 4.18925 4.42919 4.58501 4.67571 4.79100 4.87622 4.94246 4.98054 5.07770 5.14268 5.21587 5.30489 5.42666 5.63523 5.68553 5.74974 5.93451 5.95739 6.02184 6.19919 6.35062 6.38039 6.45785 6.66364 6.87725 6.92813 7.09355 7.13234 7.26571 7.38326 7.46097 7.82024 7.84259 8.03101 8.15145 9.04050 9.74722 10.76588 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002854 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.594432 B = 9807.436007 C =10274.489562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.137 3.863 3 H 0.102 0.898 4 C 0.515 3.485 5 O -0.543 6.543 6 N -0.719 5.719 7 C 0.093 3.907 8 C 0.092 3.908 9 N -0.627 5.627 10 C 0.521 3.479 11 O -0.499 6.499 12 C -0.092 4.092 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.229 4.229 17 C 0.154 3.846 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.765 9.754 -7.547 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.120 0.880 4 C 0.300 3.700 5 O -0.419 6.419 6 N -0.372 5.372 7 C -0.033 4.033 8 C -0.032 4.032 9 N -0.366 5.366 10 C 0.310 3.690 11 O -0.372 6.372 12 C -0.132 4.132 13 C -0.036 4.036 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.083 6.083 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.193 4.193 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.601 9.724 -8.092 20.871 hybrid contribution -0.259 -0.295 0.412 0.569 sum 16.341 9.429 -7.680 20.370 Atomic orbital electron populations 1.22110 0.89494 1.04890 1.02660 1.21357 0.98530 0.95847 0.81145 0.88033 1.20494 0.78701 0.79535 0.91261 1.90778 1.56401 1.64715 1.30049 1.45360 1.39791 1.41691 1.10308 1.21887 0.99035 0.97681 0.84648 1.22202 0.82737 0.98297 0.99965 1.48389 1.11821 1.60044 1.16359 1.20804 0.86284 0.78238 0.83688 1.90807 1.15777 1.49120 1.81489 1.20653 0.98354 1.02268 0.91918 1.18627 0.95731 0.94135 0.95085 1.20328 1.02659 0.98538 0.99957 1.20678 0.94872 0.96460 0.97268 1.21186 1.04478 0.95120 1.04099 1.19281 0.90862 0.86773 0.92995 1.83987 1.46118 1.31859 1.46317 1.21257 1.14685 1.09975 1.00848 0.89203 1.25273 0.97575 0.95070 0.98580 1.70030 1.36662 1.10831 1.32362 0.85797 0.79629 0.78204 0.79887 1.19515 1.20307 1.19532 1.19921 0.98578 0.99045 1.01776 0.88949 0.92011 0.91362 0.76484 0.90777 0.89090 0.90007 0.87170 0.88245 0.88294 0.87965 0.87491 0.85637 0.92026 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.57 37.16 0.28 -1.56 16 2 C 0.14 1.52 3.67 -68.91 -0.25 1.27 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.51 5.91 7.35 -11.74 -0.09 5.82 16 5 O -0.54 -8.21 17.03 5.56 0.09 -8.11 16 6 N -0.72 -5.68 5.42 -61.07 -0.33 -6.01 16 7 C 0.09 0.45 7.35 -4.26 -0.03 0.42 16 8 C 0.09 0.48 6.48 -3.38 -0.02 0.46 16 9 N -0.63 -6.23 2.97 -166.26 -0.49 -6.72 16 10 C 0.52 6.93 7.55 -10.99 -0.08 6.85 16 11 O -0.50 -8.89 11.91 5.56 0.07 -8.83 16 12 C -0.09 -1.09 4.22 -29.04 -0.12 -1.21 16 13 C -0.04 -0.61 4.37 -104.65 -0.46 -1.06 16 14 C -0.20 -3.38 9.70 -39.53 -0.38 -3.76 16 15 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 16 C -0.23 -5.10 9.13 -39.39 -0.36 -5.46 16 17 C 0.15 3.80 6.65 -39.10 -0.26 3.54 16 18 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 19 C -0.39 -11.09 9.44 30.89 0.29 -10.79 16 20 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 23 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.17 -3.68 9.65 -39.39 -0.38 -4.06 16 28 H 0.09 1.36 6.50 -51.93 -0.34 1.02 16 29 H 0.06 0.83 7.61 -51.93 -0.40 0.43 16 30 H 0.07 1.09 7.23 -51.93 -0.38 0.72 16 31 H 0.40 2.68 8.80 -40.82 -0.36 2.32 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.37 6.04 -51.93 -0.31 0.06 16 36 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 37 H 0.10 0.95 7.63 -51.93 -0.40 0.56 16 38 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.79 5.71 -52.48 -0.30 2.49 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -36.66 348.10 -7.30 -43.97 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.26 Total: 5.15 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.36 Total: -10.35 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.07 Total: -37.60 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.16 Total: -22.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.66 -7.30 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126149381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds