Wall clock time and date at job start Tue Mar 31 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47347 * 2 1 4 4 C 1.52999 * 109.47320 * 120.00295 * 2 1 3 5 5 H 1.09002 * 109.46854 * 298.22510 * 4 2 1 6 6 C 1.50699 * 109.46994 * 58.22445 * 4 2 1 7 7 O 1.21282 * 120.00306 * 78.70886 * 6 4 2 8 8 N 1.34779 * 119.99704 * 258.70828 * 6 4 2 9 9 C 1.46492 * 120.00332 * 5.72976 * 8 6 4 10 10 C 1.46505 * 119.99470 * 185.72684 * 8 6 4 11 11 C 1.50704 * 109.47053 * 270.00067 * 10 8 6 12 12 H 1.08001 * 119.99957 * 359.97438 * 11 10 8 13 13 C 1.37881 * 120.00071 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99639 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00091 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47023 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46998 * 119.99743 * 15 13 11 18 18 H 1.48491 * 109.47088 * 239.99796 * 15 13 11 19 19 N 1.46493 * 109.47155 * 178.22661 * 4 2 1 20 20 C 1.47065 * 126.30325 * 299.68120 * 19 4 2 21 21 C 1.54320 * 109.96787 * 150.90479 * 20 19 4 22 22 C 1.55604 * 104.18877 * 45.51312 * 21 20 19 23 23 S 1.67010 * 126.30111 * 120.00186 * 19 4 2 24 24 O 1.42096 * 105.13183 * 298.88899 * 23 19 4 25 25 O 1.42095 * 105.13264 * 68.55964 * 23 19 4 26 26 H 1.08997 * 109.47498 * 306.80128 * 1 2 3 27 27 H 1.09007 * 109.47045 * 66.80048 * 1 2 3 28 28 H 1.09001 * 109.47528 * 186.79648 * 1 2 3 29 29 H 1.09005 * 109.46756 * 240.00181 * 2 1 3 30 30 H 1.08993 * 109.47496 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47197 * 300.00298 * 3 2 1 32 32 H 1.09004 * 109.46999 * 59.99802 * 3 2 1 33 33 H 1.09001 * 109.46869 * 268.94657 * 9 8 6 34 34 H 1.08999 * 109.47419 * 28.94962 * 9 8 6 35 35 H 1.09001 * 109.47130 * 148.94941 * 9 8 6 36 36 H 1.08995 * 109.47194 * 30.00232 * 10 8 6 37 37 H 1.08997 * 109.47109 * 150.00607 * 10 8 6 38 38 H 0.96995 * 119.99579 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.35851 * 271.19059 * 20 19 4 40 40 H 1.09008 * 109.35372 * 30.83361 * 20 19 4 41 41 H 1.08996 * 110.65360 * 286.77750 * 21 20 19 42 42 H 1.09005 * 110.38552 * 164.11473 * 21 20 19 43 43 H 1.08997 * 111.16648 * 204.05655 * 22 21 20 44 44 H 1.09001 * 111.20690 * 79.80569 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7029 -0.1894 2.1389 6 6 1.5021 -2.1288 1.2713 7 8 2.0124 -2.9841 0.5792 8 7 0.4538 -2.4372 2.0603 9 6 -0.2420 -1.3814 2.8000 10 6 0.0100 -3.8285 2.1780 11 6 -1.0239 -4.1172 1.1203 12 1 -1.3211 -3.3418 0.4298 13 6 -1.5913 -5.3710 1.0349 14 7 -1.2297 -6.3150 1.8762 15 14 -2.8734 -5.7287 -0.2757 16 1 -3.1032 -4.5080 -1.0896 17 1 -2.3917 -6.8257 -1.1530 18 1 -4.1448 -6.1365 0.3740 19 7 3.5043 -0.7584 1.2280 20 6 4.3445 -1.3888 0.1987 21 6 5.6957 -0.6504 0.0964 22 6 6.1394 -0.4603 1.5757 23 16 4.5268 -0.0990 2.3721 24 8 4.2473 1.2942 2.3604 25 8 4.3391 -0.8902 3.5373 26 1 -0.3634 0.6156 0.8228 27 1 -0.3633 0.4049 -0.9446 28 1 -0.3634 -1.0204 0.1216 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.2114 -1.2685 3.7848 34 1 -0.1622 -0.4417 2.2533 35 1 -1.2928 -1.6483 2.9122 36 1 0.8625 -4.4943 2.0442 37 1 -0.4249 -3.9889 3.1645 38 1 -1.6285 -7.1971 1.8158 39 1 4.5187 -2.4317 0.4634 40 1 3.8337 -1.3419 -0.7632 41 1 5.5696 0.3163 -0.3909 42 1 6.4210 -1.2589 -0.4439 43 1 6.8251 0.3810 1.6759 44 1 6.5800 -1.3736 1.9756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151233869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:57 Heat of formation + Delta-G solvation = -92.642620 kcal Electronic energy + Delta-G solvation = -27090.518816 eV Core-core repulsion = 23363.766756 eV Total energy + Delta-G solvation = -3726.752060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75258 -37.24702 -36.99918 -35.99276 -35.36131 -34.76440 -32.54143 -32.11019 -28.47665 -27.19144 -26.87874 -25.97852 -25.21174 -22.81934 -22.37106 -20.33331 -19.18713 -18.30224 -17.51188 -16.96463 -16.51417 -16.47151 -15.69552 -15.30222 -15.13291 -14.71298 -14.57415 -14.24398 -13.86123 -13.63384 -13.37808 -13.13605 -12.70698 -12.60193 -12.37725 -12.21019 -12.11626 -12.07645 -11.98063 -11.92707 -11.77961 -11.60779 -11.41547 -11.17656 -10.98919 -10.87501 -10.81454 -10.67638 -10.63702 -10.46838 -10.13515 -9.58924 -9.44867 -8.44853 -8.41212 -7.60583 -6.02394 -4.06814 0.08788 2.36719 3.30222 3.33665 3.38113 3.41941 3.49594 3.81356 3.96405 4.13022 4.36338 4.45382 4.71169 4.77908 4.92263 4.99896 5.05225 5.21930 5.23497 5.31145 5.34302 5.40798 5.57004 5.64532 5.69326 5.75447 5.82753 5.96736 5.99084 6.02857 6.10726 6.19343 6.25283 6.44868 6.47054 6.56084 7.08839 7.46354 7.55836 7.93932 8.25201 8.42385 8.91452 9.08420 9.57886 11.05756 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.004291 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.320353 B = 6523.028969 C = 6817.808450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.176 3.824 5 H 0.099 0.901 6 C 0.502 3.498 7 O -0.530 6.530 8 N -0.598 5.598 9 C 0.068 3.932 10 C 0.246 3.754 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.972 5.972 20 C 0.083 3.917 21 C -0.124 4.124 22 C -0.598 4.598 23 S 2.564 3.436 24 O -0.955 6.955 25 O -0.953 6.953 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.380 15.975 -2.569 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.117 4.117 3 C -0.198 4.198 4 C 0.067 3.933 5 H 0.116 0.884 6 C 0.286 3.714 7 O -0.406 6.406 8 N -0.331 5.331 9 C -0.076 4.076 10 C 0.127 3.873 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.812 5.812 20 C -0.042 4.042 21 C -0.163 4.163 22 C -0.729 4.729 23 S 2.661 3.339 24 O -0.945 6.945 25 O -0.943 6.943 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.156 0.844 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.266 15.768 -1.967 20.074 hybrid contribution -0.405 -0.655 -1.107 1.349 sum 11.860 15.113 -3.074 19.456 Atomic orbital electron populations 1.22071 0.94015 1.03635 1.01993 1.21349 0.96392 0.96533 0.97457 1.21805 1.01576 0.94702 1.01733 1.20741 0.77229 0.95040 1.00259 0.88360 1.20456 0.80820 0.89525 0.80593 1.90624 1.59356 1.49847 1.40822 1.48172 1.30043 1.10522 1.44348 1.21933 0.98867 0.91096 0.95736 1.19301 0.95719 0.75237 0.97054 1.21448 1.21885 0.96939 1.15723 0.92357 1.24939 0.97112 0.95989 0.96137 1.69949 1.43254 1.03371 1.36861 0.86456 0.81069 0.78312 0.81632 1.19821 1.20969 1.21038 1.56907 1.12251 1.72388 1.39699 1.22063 0.88930 0.97758 0.95490 1.22738 0.97012 1.03389 0.93163 1.30829 1.20270 1.12443 1.09319 1.06599 0.78086 0.74898 0.74311 1.93605 1.82665 1.31845 1.86338 1.93643 1.83923 1.70107 1.46586 0.92160 0.92081 0.90746 0.89898 0.92181 0.92655 0.92407 0.93571 0.91735 0.90326 0.94002 0.94927 0.92824 0.89815 0.88496 0.88959 0.87288 0.84395 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 7.80 37.16 0.29 -1.86 16 2 C -0.10 -1.30 2.47 -90.62 -0.22 -1.53 16 3 C -0.14 -1.60 9.05 37.16 0.34 -1.26 16 4 C 0.18 2.78 2.03 -69.09 -0.14 2.64 16 5 H 0.10 1.46 6.23 -51.93 -0.32 1.13 16 6 C 0.50 10.38 5.51 -10.98 -0.06 10.32 16 7 O -0.53 -12.70 15.07 5.56 0.08 -12.62 16 8 N -0.60 -12.89 2.53 -182.96 -0.46 -13.35 16 9 C 0.07 1.12 9.22 59.84 0.55 1.68 16 10 C 0.25 6.49 5.12 -5.19 -0.03 6.47 16 11 C -0.52 -14.62 9.39 -34.44 -0.32 -14.95 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 N -0.97 -13.50 2.41 -107.36 -0.26 -13.76 16 20 C 0.08 0.95 5.38 -3.04 -0.02 0.94 16 21 C -0.12 -0.89 6.81 -24.65 -0.17 -1.06 16 22 C -0.60 -4.52 7.51 38.54 0.29 -4.23 16 23 S 2.56 32.47 6.15 -107.50 -0.66 31.81 16 24 O -0.96 -13.42 17.70 -57.41 -1.02 -14.44 16 25 O -0.95 -16.15 18.13 -57.41 -1.04 -17.19 16 26 H 0.06 0.71 6.75 -51.93 -0.35 0.35 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.26 6.23 -51.93 -0.32 0.94 16 29 H 0.08 1.15 7.16 -51.93 -0.37 0.78 16 30 H 0.06 0.67 7.22 -51.93 -0.37 0.29 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.89 3.65 -51.93 -0.19 0.70 16 35 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16 37 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 40 H 0.10 1.10 7.09 -51.92 -0.37 0.73 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -36.80 358.99 -8.69 -45.49 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.87 Total: -0.92 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.41 Total: -1.24 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.02 Total: -53.06 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.97 Total: -44.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 32.47 SS G_CDS: -0.66 Total: 31.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.80 -8.69 -45.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151233869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.157 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds