Wall clock time and date at job start Tue Mar 31 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47056 * 2 1 4 4 C 1.52999 * 109.47060 * 119.99708 * 2 1 3 5 5 H 1.09005 * 109.47164 * 175.37108 * 4 2 1 6 6 C 1.50697 * 109.47123 * 55.36937 * 4 2 1 7 7 O 1.21279 * 120.00300 * 247.31328 * 6 4 2 8 8 N 1.34777 * 120.00193 * 67.04313 * 6 4 2 9 9 C 1.46508 * 119.99556 * 6.63748 * 8 6 4 10 10 C 1.46499 * 120.00464 * 186.64089 * 8 6 4 11 11 C 1.50701 * 109.46733 * 89.99797 * 10 8 6 12 12 H 1.08001 * 120.00420 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99719 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99867 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00087 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47132 * 89.99361 * 15 13 11 17 17 H 1.48499 * 109.47137 * 209.99676 * 15 13 11 18 18 H 1.48502 * 109.47149 * 329.99980 * 15 13 11 19 19 N 1.46502 * 109.47474 * 295.37121 * 4 2 1 20 20 C 1.47061 * 126.30234 * 60.55618 * 19 4 2 21 21 C 1.54314 * 109.96818 * 150.90636 * 20 19 4 22 22 C 1.55610 * 104.19349 * 45.51153 * 21 20 19 23 23 S 1.67002 * 126.30070 * 240.87461 * 19 4 2 24 24 O 1.42105 * 105.13401 * 298.88739 * 23 19 4 25 25 O 1.42104 * 105.13551 * 68.44057 * 23 19 4 26 26 H 1.08999 * 109.47378 * 309.04997 * 1 2 3 27 27 H 1.08999 * 109.47629 * 69.05080 * 1 2 3 28 28 H 1.09007 * 109.47272 * 189.05292 * 1 2 3 29 29 H 1.09000 * 109.47059 * 239.99874 * 2 1 3 30 30 H 1.08998 * 109.47011 * 300.00041 * 3 2 1 31 31 H 1.09005 * 109.46640 * 59.99426 * 3 2 1 32 32 H 1.08993 * 109.46957 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46574 * 84.74230 * 9 8 6 34 34 H 1.08997 * 109.46896 * 204.73651 * 9 8 6 35 35 H 1.08997 * 109.47477 * 324.74407 * 9 8 6 36 36 H 1.08999 * 109.47274 * 209.99699 * 10 8 6 37 37 H 1.09002 * 109.47074 * 330.00170 * 10 8 6 38 38 H 0.97002 * 119.99575 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.35841 * 271.19288 * 20 19 4 40 40 H 1.09002 * 109.35252 * 30.83094 * 20 19 4 41 41 H 1.08996 * 110.65700 * 286.77332 * 21 20 19 42 42 H 1.09004 * 110.38676 * 164.11169 * 21 20 19 43 43 H 1.08993 * 111.16653 * 204.06008 * 22 21 20 44 44 H 1.08997 * 111.20110 * 79.80194 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1268 -0.7936 1.2088 6 6 1.4462 -2.1050 1.3080 7 8 0.6551 -2.3888 2.1824 8 7 1.7900 -3.0256 0.3857 9 6 2.8469 -2.7306 -0.5851 10 6 1.1069 -4.3212 0.3537 11 6 -0.0958 -4.2327 -0.5500 12 1 -0.3280 -3.3044 -1.0507 13 6 -0.8994 -5.3372 -0.7383 14 7 -1.9493 -5.2599 -1.5265 15 14 -0.4975 -6.9431 0.1273 16 1 -1.1808 -6.9795 1.4452 17 1 -0.9627 -8.0829 -0.7032 18 1 0.9705 -7.0434 0.3280 19 7 1.6448 0.0308 2.4429 20 6 0.2692 0.3363 2.8636 21 6 0.2033 0.4602 4.4004 22 6 1.4334 1.3407 4.7652 23 16 2.6738 0.7052 3.5722 24 8 3.3971 -0.3905 4.1160 25 8 3.3279 1.7669 2.8909 26 1 -0.3634 0.6474 0.7981 27 1 -0.3634 0.3674 -0.9597 28 1 -0.3634 -1.0149 0.1617 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4425 0.0005 33 1 3.8181 -2.9558 -0.1444 34 1 2.7021 -3.3408 -1.4765 35 1 2.8069 -1.6757 -0.8564 36 1 1.7895 -5.0827 -0.0235 37 1 0.7859 -4.5877 1.3607 38 1 -2.5148 -6.0368 -1.6586 39 1 -0.0478 1.2748 2.4088 40 1 -0.3946 -0.4643 2.5372 41 1 0.2842 -0.5206 4.8690 42 1 -0.7209 0.9528 4.7024 43 1 1.7509 1.1666 5.7932 44 1 1.2270 2.3970 4.5931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151233946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:59 Heat of formation + Delta-G solvation = -79.593099 kcal Electronic energy + Delta-G solvation = -27334.994761 eV Core-core repulsion = 23608.808571 eV Total energy + Delta-G solvation = -3726.186190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94902 -37.27116 -37.05319 -35.97987 -35.30623 -34.80397 -32.51983 -31.76463 -29.05685 -27.53794 -27.08864 -25.88242 -25.34966 -22.50986 -21.93149 -20.64030 -19.18106 -18.52416 -17.40166 -16.96221 -16.88054 -15.99595 -15.90930 -15.41312 -15.14712 -14.72000 -14.52995 -14.40072 -13.98058 -13.61791 -13.36384 -13.09760 -12.87784 -12.56826 -12.40530 -12.28293 -12.14614 -12.08768 -11.98848 -11.90856 -11.83720 -11.55161 -11.53697 -11.27898 -11.02462 -10.77156 -10.71040 -10.58756 -10.53443 -10.31479 -10.12997 -9.57533 -9.43040 -8.61147 -8.50559 -7.69652 -6.11487 -4.10149 0.12601 2.42201 3.24793 3.28156 3.34352 3.37033 3.50264 3.85332 3.87955 4.16724 4.37994 4.43382 4.74340 4.81167 4.86958 4.97862 5.09322 5.20691 5.22430 5.27263 5.39431 5.48682 5.54164 5.68831 5.81656 5.83518 5.86056 5.90135 6.06005 6.10903 6.16267 6.21068 6.30593 6.38829 6.60967 6.66084 6.73961 6.95750 7.32683 7.58824 8.22143 8.44329 8.88874 8.95065 9.49468 11.01496 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.004561 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.254468 B = 6137.412239 C = 6412.970031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.178 3.822 5 H 0.101 0.899 6 C 0.506 3.494 7 O -0.530 6.530 8 N -0.596 5.596 9 C 0.067 3.933 10 C 0.215 3.785 11 C -0.528 4.528 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.964 5.964 20 C 0.075 3.925 21 C -0.122 4.122 22 C -0.597 4.597 23 S 2.565 3.435 24 O -0.958 6.958 25 O -0.956 6.956 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 15.147 7.835 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.069 3.931 5 H 0.118 0.882 6 C 0.291 3.709 7 O -0.407 6.407 8 N -0.328 5.328 9 C -0.077 4.077 10 C 0.094 3.906 11 C -0.566 4.566 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.804 5.804 20 C -0.050 4.050 21 C -0.162 4.162 22 C -0.728 4.728 23 S 2.662 3.338 24 O -0.947 6.947 25 O -0.946 6.946 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.875 14.842 8.138 18.669 hybrid contribution -0.581 -0.905 0.477 1.177 sum 7.294 13.937 8.615 17.935 Atomic orbital electron populations 1.22123 0.93929 1.03670 1.01833 1.21624 0.97833 0.96922 0.96204 1.21805 1.01029 0.95005 1.01958 1.20566 0.98976 0.89248 0.84310 0.88152 1.20510 0.82558 0.85931 0.81908 1.90593 1.34973 1.79801 1.35345 1.47798 1.36877 1.17136 1.30994 1.22005 0.89908 1.01982 0.93798 1.19692 0.92872 0.79699 0.98339 1.21322 1.08630 0.99346 1.27327 0.90589 1.24837 0.94626 0.98657 0.94785 1.69893 1.15636 1.30540 1.37491 0.86870 0.79314 0.83546 0.80074 1.19979 1.21133 1.19069 1.56746 1.17541 1.69344 1.36784 1.22346 0.86488 1.03293 0.92922 1.22709 0.97614 1.00459 0.95378 1.30813 1.15618 1.10344 1.15980 1.06570 0.74958 0.75591 0.76663 1.93622 1.69995 1.51694 1.79388 1.93609 1.72374 1.57275 1.71310 0.91991 0.92647 0.90975 0.88730 0.92609 0.92043 0.92544 0.93496 0.90146 0.91293 0.95255 0.94411 0.92591 0.90952 0.86619 0.88429 0.87488 0.84490 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 7.99 37.16 0.30 -2.03 16 2 C -0.11 -1.43 2.55 -90.62 -0.23 -1.66 16 3 C -0.14 -1.64 8.81 37.16 0.33 -1.31 16 4 C 0.18 2.73 2.00 -69.08 -0.14 2.59 16 5 H 0.10 1.40 7.70 -51.93 -0.40 1.00 16 6 C 0.51 9.96 5.33 -10.99 -0.06 9.90 16 7 O -0.53 -12.03 14.04 5.56 0.08 -11.95 16 8 N -0.60 -12.00 2.86 -182.95 -0.52 -12.53 16 9 C 0.07 1.01 9.93 59.85 0.59 1.61 16 10 C 0.21 5.15 4.25 -5.19 -0.02 5.13 16 11 C -0.53 -14.57 9.94 -34.44 -0.34 -14.91 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 15 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 N -0.96 -13.27 1.95 -107.36 -0.21 -13.48 16 20 C 0.08 0.88 4.21 -3.05 -0.01 0.86 16 21 C -0.12 -1.11 6.81 -24.65 -0.17 -1.27 16 22 C -0.60 -4.72 7.51 38.55 0.29 -4.43 16 23 S 2.56 32.34 6.15 -107.50 -0.66 31.68 16 24 O -0.96 -15.92 18.14 -57.43 -1.04 -16.97 16 25 O -0.96 -13.45 17.49 -57.43 -1.00 -14.46 16 26 H 0.06 0.79 4.80 -51.93 -0.25 0.54 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.36 6.75 -51.92 -0.35 1.01 16 29 H 0.09 1.24 5.31 -51.93 -0.28 0.96 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 35 H 0.07 0.88 4.15 -51.93 -0.22 0.66 16 36 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 37 H 0.04 0.98 6.77 -51.93 -0.35 0.62 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.66 6.88 -51.93 -0.36 0.31 16 40 H 0.12 1.67 5.84 -51.93 -0.30 1.37 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -36.44 349.45 -8.18 -44.61 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.62 Total: 0.87 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.44 Total: -3.54 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.04 Total: -52.19 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.97 Total: -43.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 32.34 SS G_CDS: -0.66 Total: 31.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.44 -8.18 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151233946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.979 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds