Wall clock time and date at job start Tue Mar 31 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.39961 * 2 1 4 4 C 1.53177 * 109.39944 * 240.17492 * 2 1 3 5 5 S 1.81819 * 108.67860 * 177.32017 * 4 2 1 6 6 O 1.42099 * 108.70273 * 166.57300 * 5 4 2 7 7 O 1.42100 * 108.70336 * 297.92000 * 5 4 2 8 8 C 1.81820 * 101.01985 * 52.31449 * 5 4 2 9 9 C 1.53177 * 108.68043 * 307.68666 * 8 5 4 10 10 N 1.46470 * 109.90001 * 62.63170 * 9 8 5 11 11 C 1.46902 * 110.99731 * 163.00132 * 10 9 8 12 12 C 1.52994 * 109.47354 * 293.06657 * 11 10 9 13 13 C 1.50699 * 109.47146 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00137 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00196 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99743 * 359.97438 * 15 13 12 17 17 C 1.46498 * 120.00375 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47051 * 89.99727 * 17 15 13 19 19 H 1.08006 * 119.99838 * 0.02562 * 18 17 15 20 20 C 1.37870 * 120.00076 * 179.97438 * 18 17 15 21 21 N 1.31513 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00199 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46939 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47149 * 120.00141 * 22 20 18 25 25 H 1.48501 * 109.46972 * 240.00201 * 22 20 18 26 26 H 1.08998 * 109.47296 * 187.49795 * 1 2 3 27 27 H 1.08997 * 109.46899 * 307.49488 * 1 2 3 28 28 H 1.08998 * 109.46987 * 67.49686 * 1 2 3 29 29 H 1.08999 * 109.60174 * 297.07811 * 4 2 1 30 30 H 1.08997 * 109.60475 * 57.40130 * 4 2 1 31 31 H 1.09009 * 109.59803 * 67.44299 * 8 5 4 32 32 H 1.08999 * 109.60254 * 187.75933 * 8 5 4 33 33 H 1.08996 * 109.40428 * 182.76550 * 9 8 5 34 34 H 1.09000 * 109.39862 * 302.59265 * 9 8 5 35 35 H 1.09002 * 109.46899 * 53.07254 * 11 10 9 36 36 H 1.09003 * 109.47097 * 173.06680 * 11 10 9 37 37 H 1.09002 * 109.47605 * 300.00165 * 12 11 10 38 38 H 1.09003 * 109.47000 * 59.99963 * 12 11 10 39 39 H 1.09003 * 109.47453 * 89.99917 * 16 15 13 40 40 H 1.08997 * 109.47216 * 210.00167 * 16 15 13 41 41 H 1.08998 * 109.46986 * 330.00251 * 16 15 13 42 42 H 1.08998 * 109.46985 * 209.99684 * 17 15 13 43 43 H 1.09001 * 109.46821 * 330.00007 * 17 15 13 44 44 H 0.97004 * 120.00483 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0388 -0.7186 -1.2534 5 16 3.8550 -0.6377 -1.2742 6 8 4.3409 -1.5538 -2.2457 7 8 4.2496 0.7257 -1.3443 8 6 4.2504 -1.2785 0.3807 9 6 3.4492 -0.4859 1.4181 10 7 2.0148 -0.6865 1.1996 11 6 1.2413 -0.2879 2.3832 12 6 1.5505 -1.2410 3.5393 13 6 0.7565 -0.8324 4.7533 14 8 0.0165 0.1269 4.6992 15 7 0.8695 -1.5325 5.8994 16 6 1.7639 -2.6910 5.9650 17 6 0.0981 -1.1350 7.0797 18 6 -1.2316 -1.8442 7.0729 19 1 -1.4772 -2.5235 6.2699 20 6 -2.1341 -1.6268 8.0923 21 7 -1.8348 -0.8001 9.0703 22 14 -3.7820 -2.5065 8.0843 23 1 -3.8738 -3.3747 6.8830 24 1 -3.9048 -3.3388 9.3079 25 1 -4.8778 -1.5046 8.0552 26 1 -0.3634 -1.0188 0.1341 27 1 -0.3633 0.6255 0.8153 28 1 -0.3633 0.3933 -0.9494 29 1 1.7193 -1.7605 -1.2326 30 1 1.6385 -0.2311 -2.1423 31 1 3.9809 -2.3332 0.4384 32 1 5.3171 -1.1627 0.5725 33 1 3.7142 -0.8276 2.4186 34 1 3.6836 0.5743 1.3237 35 1 1.5114 0.7289 2.6682 36 1 0.1767 -0.3299 2.1525 37 1 1.2804 -2.2578 3.2543 38 1 2.6151 -1.1990 3.7700 39 1 2.7561 -2.3667 6.2788 40 1 1.3730 -3.4115 6.6833 41 1 1.8280 -3.1565 4.9815 42 1 0.6487 -1.4039 7.9811 43 1 -0.0648 -0.0574 7.0613 44 1 -2.4699 -0.6468 9.7874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179353970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:42 Heat of formation + Delta-G solvation = -91.157271 kcal Electronic energy + Delta-G solvation = -25421.145215 eV Core-core repulsion = 21694.457565 eV Total energy + Delta-G solvation = -3726.687650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71928 -38.63953 -37.26220 -36.34837 -34.89309 -33.63105 -32.80722 -32.39472 -29.39510 -28.00256 -27.60413 -25.81518 -24.08679 -23.47778 -22.04044 -20.45261 -19.17493 -18.44955 -17.26970 -16.80776 -16.61425 -16.53669 -16.21353 -16.04616 -15.50564 -15.14997 -15.06306 -14.57021 -14.09490 -13.84439 -13.70022 -13.14325 -12.96849 -12.81500 -12.61493 -12.42923 -12.33853 -12.28156 -12.20506 -12.18019 -11.96463 -11.86167 -11.64388 -11.59790 -11.21329 -10.98979 -10.87176 -10.84714 -10.61688 -10.36513 -10.19608 -9.65075 -8.98358 -8.77191 -8.47783 -7.69584 -6.08261 -4.13190 -0.31651 2.29731 3.12912 3.26691 3.30321 3.33237 3.35886 3.40392 3.67964 3.97622 4.07438 4.26200 4.41495 4.44152 4.56058 4.66656 4.73345 5.02734 5.03209 5.11239 5.20602 5.26735 5.28050 5.30760 5.37876 5.43058 5.56088 5.64488 5.69350 5.85603 5.92002 5.96840 6.02404 6.17261 6.57910 6.64789 7.00654 7.39571 7.48990 7.87994 8.19154 8.36341 8.85815 9.03532 9.52208 10.99874 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.002673 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.937825 B =10473.198041 C =10878.890813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 H 0.066 0.934 4 C -0.591 4.591 5 S 2.409 3.591 6 O -0.945 6.945 7 O -0.941 6.941 8 C -0.593 4.593 9 C 0.057 3.943 10 N -0.554 5.554 11 C 0.067 3.933 12 C -0.138 4.138 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.602 5.602 16 C 0.083 3.917 17 C 0.244 3.756 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -2.311 -18.269 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 H 0.084 0.916 4 C -0.721 4.721 5 S 2.593 3.407 6 O -0.942 6.942 7 O -0.938 6.938 8 C -0.723 4.723 9 C -0.072 4.072 10 N -0.280 5.280 11 C -0.059 4.059 12 C -0.179 4.179 13 C 0.290 3.710 14 O -0.423 6.423 15 N -0.334 5.334 16 C -0.061 4.061 17 C 0.125 3.875 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.780 -1.925 -18.868 22.326 hybrid contribution -1.200 -0.215 0.861 1.492 sum 10.581 -2.140 -18.007 20.995 Atomic orbital electron populations 1.22010 0.92290 1.03739 1.02789 1.21239 0.98128 0.95189 0.86952 0.91623 1.30307 1.24866 1.11262 1.05679 1.08210 0.78889 0.75718 0.77931 1.93596 1.78304 1.65433 1.56913 1.93598 1.80699 1.33259 1.86237 1.30185 1.09378 1.12529 1.20245 1.21852 0.86868 0.98318 1.00115 1.61278 1.02852 1.59770 1.04058 1.21984 0.99548 0.97236 0.87148 1.21707 1.00805 1.01659 0.93719 1.20246 0.82985 0.83568 0.84199 1.90672 1.39541 1.28404 1.83705 1.48164 1.43379 1.28636 1.13249 1.21644 0.93130 0.89370 1.01964 1.19296 0.90039 0.97374 0.80789 1.21461 1.00795 1.26207 1.08000 0.92414 1.24945 0.98573 0.95313 0.95343 1.69940 1.36156 1.35709 1.11589 0.86439 0.83698 0.79432 0.77818 1.19798 1.20956 1.20864 0.90886 0.90882 0.91612 0.83853 0.84481 0.83872 0.84499 0.87756 0.92263 0.93080 0.88120 0.88493 0.89711 0.93823 0.90792 0.92316 0.95050 0.93851 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.02 37.16 0.30 -0.94 16 2 C 0.09 0.77 2.48 -67.86 -0.17 0.60 16 3 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 4 C -0.59 -3.76 5.85 37.25 0.22 -3.54 16 5 S 2.41 19.14 5.34 -107.50 -0.57 18.56 16 6 O -0.95 -10.63 18.11 -57.81 -1.05 -11.67 16 7 O -0.94 -10.72 18.10 -57.81 -1.05 -11.76 16 8 C -0.59 -3.54 6.58 37.25 0.25 -3.29 16 9 C 0.06 0.44 5.27 -3.97 -0.02 0.42 16 10 N -0.55 -4.93 4.32 -227.13 -0.98 -5.92 16 11 C 0.07 0.80 3.76 -3.83 -0.01 0.78 16 12 C -0.14 -1.76 4.23 -27.89 -0.12 -1.88 16 13 C 0.50 9.67 7.67 -10.98 -0.08 9.59 16 14 O -0.54 -12.85 15.56 5.56 0.09 -12.76 16 15 N -0.60 -12.14 2.86 -182.95 -0.52 -12.67 16 16 C 0.08 1.22 10.24 59.85 0.61 1.83 16 17 C 0.24 6.24 5.16 -5.19 -0.03 6.22 16 18 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.07 0.69 6.58 -51.93 -0.34 0.34 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.73 5.95 -51.93 -0.31 0.42 16 34 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 35 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.10 1.29 5.47 -51.93 -0.28 1.00 16 37 H 0.10 1.12 7.40 -51.93 -0.38 0.74 16 38 H 0.08 0.88 6.27 -51.93 -0.33 0.55 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 41 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 42 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -37.49 361.23 -9.35 -46.84 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.95 Total: -3.43 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 0.52 Total: -3.57 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.77 Total: -44.14 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -2.01 Total: -36.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 19.14 SS G_CDS: -0.57 Total: 18.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.49 -9.35 -46.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179353970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -37.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds