Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.32574 * 2 1 4 4 C 1.53180 * 109.39890 * 119.77722 * 2 1 3 5 5 S 1.81819 * 108.67640 * 182.76803 * 4 2 1 6 6 O 1.42106 * 108.69983 * 193.43100 * 5 4 2 7 7 O 1.42093 * 108.70320 * 61.94500 * 5 4 2 8 8 C 1.81809 * 101.02115 * 307.68503 * 5 4 2 9 9 C 1.53187 * 108.68010 * 52.31587 * 8 5 4 10 10 N 1.46468 * 109.89905 * 297.36483 * 9 8 5 11 11 C 1.46898 * 110.99980 * 196.99567 * 10 9 8 12 12 C 1.52997 * 109.47052 * 66.62379 * 11 10 9 13 13 C 1.50698 * 109.47040 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00444 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00053 * 0.02562 * 15 13 12 17 17 C 1.46505 * 119.99859 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47364 * 270.00388 * 17 15 13 19 19 H 1.08005 * 119.99812 * 0.02562 * 18 17 15 20 20 C 1.37876 * 120.00476 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00347 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46873 * 59.99800 * 22 20 18 24 24 H 1.48501 * 109.46904 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46978 * 299.99933 * 22 20 18 26 26 H 1.09004 * 109.47021 * 171.81057 * 1 2 3 27 27 H 1.09004 * 109.47182 * 291.81320 * 1 2 3 28 28 H 1.09002 * 109.47236 * 51.81595 * 1 2 3 29 29 H 1.09005 * 109.59929 * 63.01041 * 4 2 1 30 30 H 1.08999 * 109.73841 * 302.60687 * 4 2 1 31 31 H 1.09002 * 109.60457 * 292.55914 * 8 5 4 32 32 H 1.09000 * 109.73670 * 172.15219 * 8 5 4 33 33 H 1.09000 * 109.40046 * 177.22780 * 9 8 5 34 34 H 1.09006 * 109.32289 * 57.44945 * 9 8 5 35 35 H 1.09006 * 109.47110 * 306.62734 * 11 10 9 36 36 H 1.09003 * 109.47548 * 186.62628 * 11 10 9 37 37 H 1.09002 * 109.47061 * 60.00696 * 12 11 10 38 38 H 1.08998 * 109.47354 * 300.00041 * 12 11 10 39 39 H 1.08996 * 109.47247 * 89.99798 * 16 15 13 40 40 H 1.08999 * 109.46456 * 329.99316 * 16 15 13 41 41 H 1.09004 * 109.46899 * 210.00156 * 16 15 13 42 42 H 1.09002 * 109.47049 * 30.00561 * 17 15 13 43 43 H 1.08999 * 109.47120 * 150.00484 * 17 15 13 44 44 H 0.97003 * 119.99948 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0286 0.0000 4 6 2.0388 -0.7175 1.2541 5 16 3.8549 -0.6343 1.2761 6 8 4.3412 -1.5496 2.2482 7 8 4.2478 0.7296 1.3428 8 6 4.2523 -1.2752 -0.3783 9 6 3.4508 -0.4839 -1.4166 10 7 2.0165 -0.6862 -1.1991 11 6 1.2433 -0.2889 -2.3832 12 6 1.5605 -1.2372 -3.5412 13 6 0.7678 -0.8293 -4.7561 14 8 0.0228 0.1262 -4.7015 15 7 0.8867 -1.5263 -5.9036 16 6 1.7862 -2.6808 -5.9696 17 6 0.1156 -1.1300 -7.0846 18 6 -1.2105 -1.8459 -7.0822 19 1 -1.4547 -2.5275 -6.2808 20 6 -2.1120 -1.6307 -8.1029 21 7 -1.8148 -0.8003 -9.0785 22 14 -3.7555 -2.5186 -8.1002 23 1 -4.5104 -2.1589 -6.8731 24 1 -4.5366 -2.1177 -9.2979 25 1 -3.5257 -3.9854 -8.1279 26 1 -0.3633 -1.0172 -0.1464 27 1 -0.3634 0.3819 0.9541 28 1 -0.3634 0.6353 -0.8078 29 1 1.7206 -1.7599 1.2333 30 1 1.6396 -0.2310 2.1440 31 1 3.9843 -2.3301 -0.4359 32 1 5.3184 -1.1576 -0.5723 33 1 3.7171 -0.8255 -2.4168 34 1 3.6853 0.5764 -1.3217 35 1 1.5084 0.7301 -2.6652 36 1 0.1785 -0.3375 -2.1551 37 1 1.2954 -2.2563 -3.2593 38 1 2.6253 -1.1887 -3.7694 39 1 1.2408 -3.5826 -5.6916 40 1 2.6183 -2.5327 -5.2813 41 1 2.1687 -2.7858 -6.9849 42 1 -0.0527 -0.0533 -7.0642 43 1 0.6694 -1.3942 -7.9855 44 1 -2.4489 -0.6491 -9.7968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179353979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -91.077276 kcal Electronic energy + Delta-G solvation = -25421.502314 eV Core-core repulsion = 21694.818132 eV Total energy + Delta-G solvation = -3726.684181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72019 -38.63983 -37.26782 -36.34587 -34.89418 -33.63398 -32.80342 -32.39201 -29.39544 -28.00164 -27.60261 -25.81408 -24.09010 -23.47579 -22.04465 -20.45123 -19.17557 -18.44952 -17.27722 -16.80568 -16.62518 -16.54164 -16.20069 -16.05523 -15.51867 -15.16567 -15.02913 -14.56621 -14.09793 -13.82597 -13.68851 -13.14274 -12.95935 -12.82568 -12.61145 -12.43288 -12.34130 -12.26638 -12.23578 -12.12399 -11.97483 -11.91903 -11.63924 -11.59558 -11.22980 -10.96891 -10.89419 -10.85879 -10.58281 -10.36105 -10.18633 -9.68551 -8.98755 -8.77209 -8.46435 -7.69720 -6.07552 -4.12459 -0.31519 2.29640 3.12794 3.29245 3.29780 3.33342 3.34255 3.39886 3.68075 3.97541 4.07388 4.26190 4.41995 4.44198 4.55988 4.66641 4.73079 5.02854 5.03089 5.10762 5.19005 5.26721 5.28367 5.30633 5.37889 5.42950 5.52224 5.65003 5.71422 5.88124 5.92469 5.97297 6.02129 6.14723 6.57941 6.64794 7.00303 7.39077 7.49110 7.88311 8.19713 8.35858 8.85739 9.03359 9.52649 11.00572 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.002673 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.303963 B =10471.610133 C =10877.202027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 H 0.066 0.934 4 C -0.591 4.591 5 S 2.409 3.591 6 O -0.945 6.945 7 O -0.941 6.941 8 C -0.594 4.594 9 C 0.057 3.943 10 N -0.553 5.553 11 C 0.068 3.932 12 C -0.138 4.138 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.603 5.603 16 C 0.086 3.914 17 C 0.245 3.755 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -2.173 18.263 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 H 0.084 0.916 4 C -0.721 4.721 5 S 2.593 3.407 6 O -0.942 6.942 7 O -0.938 6.938 8 C -0.724 4.724 9 C -0.072 4.072 10 N -0.279 5.279 11 C -0.059 4.059 12 C -0.179 4.179 13 C 0.290 3.710 14 O -0.423 6.423 15 N -0.335 5.335 16 C -0.058 4.058 17 C 0.126 3.874 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.859 -1.783 18.853 22.344 hybrid contribution -1.213 -0.255 -0.847 1.501 sum 10.647 -2.037 18.006 21.017 Atomic orbital electron populations 1.22009 0.92285 1.03746 1.02773 1.21233 0.98122 0.95193 0.86946 0.91630 1.30299 1.24860 1.11284 1.05653 1.08198 0.78898 0.75714 0.77915 1.93599 1.78305 1.65439 1.56885 1.93597 1.80744 1.33175 1.86275 1.30199 1.09393 1.12539 1.20270 1.21857 0.86877 0.98333 1.00089 1.61278 1.02824 1.59771 1.04059 1.21978 0.99533 0.97261 0.87118 1.21714 1.00747 1.01782 0.93656 1.20234 0.83094 0.83483 0.84162 1.90673 1.39319 1.28576 1.83723 1.48164 1.43151 1.28992 1.13162 1.21624 0.92748 0.89322 1.02147 1.19300 0.90087 0.97331 0.80679 1.21384 1.01087 1.26042 1.08070 0.92545 1.24941 0.98532 0.95308 0.95348 1.69921 1.36384 1.35538 1.11597 0.86550 0.83510 0.79801 0.77505 1.20166 1.21163 1.20248 0.90876 0.91606 0.90917 0.83844 0.84491 0.83884 0.84493 0.87784 0.92254 0.93083 0.88135 0.88510 0.89680 0.93155 0.92610 0.91444 0.93872 0.95059 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.00 37.16 0.30 -0.94 16 2 C 0.09 0.77 2.47 -67.85 -0.17 0.60 16 3 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 4 C -0.59 -3.76 5.84 37.25 0.22 -3.54 16 5 S 2.41 19.12 5.35 -107.50 -0.57 18.55 16 6 O -0.95 -10.61 18.11 -57.80 -1.05 -11.66 16 7 O -0.94 -10.70 18.10 -57.80 -1.05 -11.74 16 8 C -0.59 -3.54 6.58 37.25 0.24 -3.30 16 9 C 0.06 0.44 5.27 -3.96 -0.02 0.42 16 10 N -0.55 -4.94 4.32 -227.12 -0.98 -5.92 16 11 C 0.07 0.80 3.76 -3.83 -0.01 0.78 16 12 C -0.14 -1.76 4.23 -27.89 -0.12 -1.88 16 13 C 0.50 9.68 7.67 -10.98 -0.08 9.59 16 14 O -0.54 -12.85 15.56 5.56 0.09 -12.77 16 15 N -0.60 -12.16 2.86 -182.95 -0.52 -12.68 16 16 C 0.09 1.26 10.29 59.85 0.62 1.88 16 17 C 0.25 6.28 5.20 -5.19 -0.03 6.25 16 18 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 19 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.07 0.68 6.64 -51.93 -0.34 0.34 16 29 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.72 5.94 -51.93 -0.31 0.42 16 34 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 35 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.10 1.29 5.50 -51.93 -0.29 1.00 16 37 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 38 H 0.09 0.87 5.55 -51.93 -0.29 0.58 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.61 6.44 -51.93 -0.33 0.27 16 41 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 42 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 43 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -37.54 360.97 -9.34 -46.88 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.93 Total: -3.47 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.52 Total: -3.56 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.77 Total: -44.22 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -2.01 Total: -36.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 19.12 SS G_CDS: -0.57 Total: 18.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.54 -9.34 -46.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179353979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.200 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds