Wall clock time and date at job start Tue Mar 31 2020 04:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 N 1.46497 * 109.47018 * 179.97438 * 3 2 1 5 5 C 1.45531 * 115.55178 * 89.99463 * 4 3 2 6 6 C 1.53110 * 111.83421 * 213.27508 * 5 4 3 7 7 C 1.54112 * 108.98907 * 273.90165 * 6 5 4 8 8 N 1.45510 * 108.32321 * 59.70659 * 7 6 5 9 9 S 1.65606 * 120.81640 * 212.02748 * 8 7 6 10 10 O 1.42094 * 104.27817 * 333.92852 * 9 8 7 11 11 O 1.42106 * 104.27580 * 206.07083 * 9 8 7 12 12 C 1.81396 * 104.45103 * 90.00068 * 9 8 7 13 13 C 1.52997 * 109.47360 * 179.97438 * 12 9 8 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46695 * 118.36696 * 32.29991 * 8 7 6 23 23 C 1.32819 * 115.55147 * 270.01406 * 4 3 2 24 24 O 1.21279 * 118.97690 * 349.61763 * 23 4 3 25 25 H 1.09000 * 109.47319 * 300.00407 * 1 2 3 26 26 H 1.08995 * 109.47061 * 60.00886 * 1 2 3 27 27 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47040 * 239.98863 * 2 1 3 29 29 H 1.09004 * 109.46637 * 119.99577 * 2 1 3 30 30 H 1.09000 * 109.47307 * 59.99586 * 3 2 1 31 31 H 1.09004 * 109.46971 * 299.99372 * 3 2 1 32 32 H 1.09006 * 109.00876 * 92.67398 * 5 4 3 33 33 H 1.08991 * 108.94742 * 333.84576 * 5 4 3 34 34 H 1.09003 * 109.55110 * 154.05217 * 6 5 4 35 35 H 1.08999 * 109.55338 * 33.75356 * 6 5 4 36 36 H 1.09003 * 109.69452 * 300.00206 * 7 6 5 37 37 H 1.09002 * 109.69888 * 179.41995 * 7 6 5 38 38 H 1.09002 * 109.47134 * 59.99751 * 12 9 8 39 39 H 1.08998 * 109.46953 * 300.00489 * 12 9 8 40 40 H 1.09002 * 109.47153 * 59.99820 * 13 12 9 41 41 H 1.09001 * 109.46832 * 300.00011 * 13 12 9 42 42 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 43 43 H 1.08992 * 109.53121 * 30.32881 * 22 8 7 44 44 H 1.08998 * 109.53025 * 150.54860 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1332 1.4421 -1.3121 6 6 5.4509 0.6622 -1.3126 7 6 6.5900 1.6022 -0.8723 8 7 6.2880 2.0923 0.4640 9 16 6.7651 3.6048 0.9408 10 8 7.9003 3.8850 0.1334 11 8 6.8772 3.5076 2.3541 12 6 5.3783 4.6816 0.4850 13 6 5.7015 6.1241 0.8797 14 6 4.5496 7.0187 0.5004 15 1 3.6744 6.6003 0.0256 16 6 4.6127 8.3713 0.7603 17 7 5.6782 8.8807 1.3389 18 14 3.1846 9.4802 0.2908 19 1 1.9583 9.0353 1.0005 20 1 3.4983 10.8802 0.6738 21 1 2.9621 9.4067 -1.1756 22 6 5.5558 1.2115 1.3805 23 6 4.0773 1.4423 1.1991 24 8 3.3888 1.6334 2.1791 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 4.3299 2.4715 -1.6118 33 1 3.4514 0.9875 -2.0307 34 1 5.6534 0.2889 -2.3165 35 1 5.3796 -0.1748 -0.6180 36 1 6.6617 2.4416 -1.5640 37 1 7.5329 1.0554 -0.8587 38 1 4.4784 4.3555 1.0064 39 1 5.2145 4.6270 -0.5912 40 1 6.6015 6.4504 0.3586 41 1 5.8650 6.1782 1.9560 42 1 5.7227 9.8324 1.5214 43 1 5.7933 0.1721 1.1545 44 1 5.8413 1.4365 2.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191011641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:21 Heat of formation + Delta-G solvation = -108.314180 kcal Electronic energy + Delta-G solvation = -26532.705176 eV Core-core repulsion = 22805.273547 eV Total energy + Delta-G solvation = -3727.431630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69374 -37.33070 -36.69954 -36.21856 -35.50380 -33.90369 -33.37355 -31.50931 -31.16755 -28.51375 -26.11662 -25.76200 -25.48937 -22.08988 -21.72301 -21.38372 -19.68128 -18.71463 -17.73997 -16.94126 -16.70874 -16.61448 -16.19462 -15.55120 -15.25406 -14.91549 -14.63123 -14.52699 -14.39420 -13.97065 -13.57690 -13.31156 -13.08532 -12.96142 -12.58981 -12.45590 -12.17154 -12.10879 -11.85066 -11.76466 -11.64548 -11.60933 -11.49931 -11.36273 -11.09755 -11.05160 -10.97844 -10.88354 -10.47001 -10.38427 -10.18840 -9.74305 -9.33867 -8.89890 -8.79962 -8.49312 -6.11511 -4.16965 0.64002 2.38909 2.87064 3.00570 3.27632 3.32451 3.34329 4.18626 4.26933 4.31854 4.38404 4.47703 4.61205 4.74180 4.79049 4.89505 4.94519 5.02460 5.12567 5.20023 5.23639 5.27938 5.36840 5.48211 5.51844 5.56725 5.58879 5.62983 5.66254 5.72221 5.83255 5.87986 5.94455 6.03318 6.28808 6.44346 6.47173 7.28896 7.35523 7.39109 7.80975 8.05370 8.17873 8.85567 9.47487 10.99594 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.004998 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.448811 B = 5600.646908 C = 7142.030479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.089 3.911 4 N -0.598 5.598 5 C 0.117 3.883 6 C -0.149 4.149 7 C 0.119 3.881 8 N -1.003 6.003 9 S 2.585 3.415 10 O -0.958 6.958 11 O -0.956 6.956 12 C -0.584 4.584 13 C 0.031 3.969 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.103 3.897 23 C 0.500 3.500 24 O -0.533 6.533 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.108 0.892 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 -20.962 -8.190 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.034 4.034 4 N -0.331 5.331 5 C -0.005 4.005 6 C -0.188 4.188 7 C -0.006 4.006 8 N -0.840 5.840 9 S 2.685 3.315 10 O -0.949 6.949 11 O -0.946 6.946 12 C -0.718 4.718 13 C -0.008 4.008 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.025 4.025 23 C 0.285 3.715 24 O -0.409 6.409 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.751 -20.524 -7.184 22.065 hybrid contribution -1.375 0.653 -0.689 1.671 sum -5.126 -19.870 -7.873 21.979 Atomic orbital electron populations 1.21686 0.95100 1.01747 1.02178 1.21826 0.96299 0.97051 1.02108 1.21782 0.80238 0.97167 1.04253 1.47145 1.07620 1.72644 1.05695 1.21417 0.94687 1.01261 0.83180 1.22550 0.93991 0.98885 1.03375 1.21475 0.97629 0.98841 0.82646 1.57857 1.71937 1.32915 1.21275 1.05972 0.77509 0.73496 0.74565 1.93547 1.47143 1.83572 1.70624 1.93549 1.86661 1.84770 1.29664 1.30450 1.16960 1.13775 1.10612 1.18951 0.99009 0.84917 0.97969 1.20924 1.02135 0.92046 1.40704 0.92195 1.25052 0.96205 0.98197 0.94926 1.69942 1.28024 1.13312 1.41560 0.86534 0.82357 0.79498 0.78903 1.20065 1.21026 1.20115 1.21695 0.86787 0.97302 0.96759 1.20731 0.91238 0.76840 0.82654 1.90767 1.64386 1.47968 1.37795 0.92304 0.92610 0.92630 0.92124 0.91783 0.88792 0.90517 0.91195 0.89920 0.88761 0.90275 0.89493 0.90888 0.86348 0.86439 0.94866 0.94839 0.92461 0.87373 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.14 6.23 -26.73 -0.17 -1.31 16 3 C 0.09 0.93 4.97 -4.05 -0.02 0.90 16 4 N -0.60 -6.56 2.76 -174.94 -0.48 -7.04 16 5 C 0.12 0.93 5.90 -4.51 -0.03 0.90 16 6 C -0.15 -0.96 5.67 -26.09 -0.15 -1.10 16 7 C 0.12 1.13 5.75 -3.99 -0.02 1.10 16 8 N -1.00 -13.10 2.78 -115.58 -0.32 -13.42 16 9 S 2.59 47.51 5.41 -107.50 -0.58 46.93 16 10 O -0.96 -19.46 17.12 -57.54 -0.99 -20.44 16 11 O -0.96 -20.51 16.65 -57.54 -0.96 -21.46 16 12 C -0.58 -11.62 6.12 37.16 0.23 -11.40 16 13 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.10 1.26 5.55 -5.07 -0.03 1.23 16 23 C 0.50 6.90 7.22 -11.84 -0.09 6.81 16 24 O -0.53 -9.43 16.00 5.56 0.09 -9.34 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.23 6.86 -51.93 -0.36 0.88 16 31 H 0.08 0.68 7.92 -51.93 -0.41 0.26 16 32 H 0.07 0.60 7.84 -51.93 -0.41 0.20 16 33 H 0.08 0.46 7.85 -51.93 -0.41 0.06 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.49 6.31 -51.93 -0.33 0.16 16 36 H 0.09 0.82 7.75 -51.93 -0.40 0.42 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 2.33 8.14 -51.92 -0.42 1.91 16 39 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.11 0.92 6.64 -51.93 -0.34 0.57 16 44 H 0.13 1.75 6.96 -51.93 -0.36 1.39 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -36.60 365.48 -9.68 -46.28 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.21 Total: -1.23 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.45 Total: -16.22 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.07 Total: -46.45 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -1.85 Total: -51.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.58 Total: 46.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.60 -9.68 -46.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191011641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.034 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds