Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.70052 * 2 1 4 4 C 1.53373 * 109.67418 * 120.53280 * 2 1 3 5 5 C 1.52917 * 108.66346 * 187.28113 * 4 2 1 6 6 N 1.45762 * 110.48679 * 309.23388 * 5 4 2 7 7 C 1.33356 * 124.10493 * 19.05843 * 6 5 4 8 8 O 1.21279 * 118.24537 * 177.79807 * 7 6 5 9 9 C 1.50176 * 123.50939 * 357.81773 * 7 6 5 10 10 H 1.09004 * 109.39806 * 257.52135 * 9 7 6 11 11 N 1.46494 * 109.40298 * 137.68920 * 9 7 6 12 12 C 1.34776 * 119.99701 * 84.99699 * 11 9 7 13 13 O 1.21588 * 120.00304 * 0.02562 * 12 11 9 14 14 C 1.47536 * 120.00042 * 180.02562 * 12 11 9 15 15 C 1.39669 * 120.19570 * 359.97438 * 14 12 11 16 16 C 1.37830 * 119.91884 * 180.02562 * 15 14 12 17 17 C 1.38563 * 120.32517 * 359.97438 * 16 15 14 18 18 C 1.38031 * 120.40187 * 359.76456 * 17 16 15 19 19 C 1.38829 * 120.06943 * 0.51459 * 18 17 16 20 20 O 1.35522 * 120.16388 * 179.73921 * 19 18 17 21 21 C 1.34813 * 116.99496 * 5.61014 * 20 19 18 22 22 H 1.08002 * 120.00283 * 354.93681 * 21 20 19 23 23 C 1.38708 * 120.00074 * 174.94676 * 21 20 19 24 24 N 1.31517 * 120.00014 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99567 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47097 * 270.00014 * 25 23 21 27 27 H 1.48494 * 109.47526 * 30.00311 * 25 23 21 28 28 H 1.48507 * 109.46725 * 150.00215 * 25 23 21 29 29 H 1.09001 * 109.47251 * 180.51883 * 1 2 3 30 30 H 1.09003 * 109.47280 * 300.51518 * 1 2 3 31 31 H 1.08998 * 109.47012 * 60.51989 * 1 2 3 32 32 H 1.09001 * 109.61646 * 67.52177 * 4 2 1 33 33 H 1.08995 * 109.73166 * 307.10684 * 4 2 1 34 34 H 1.09003 * 109.30007 * 188.92894 * 5 4 2 35 35 H 1.08991 * 109.30469 * 69.54456 * 5 4 2 36 36 H 0.96996 * 117.94671 * 199.07387 * 6 5 4 37 37 H 0.96994 * 120.00555 * 265.00226 * 11 9 7 38 38 H 1.07998 * 120.03905 * 359.97438 * 15 14 12 39 39 H 1.08001 * 119.83304 * 180.02562 * 16 15 14 40 40 H 1.07998 * 119.80231 * 180.02562 * 17 16 15 41 41 H 1.08004 * 119.96730 * 180.25622 * 18 17 16 42 42 H 0.97003 * 119.99520 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0463 -0.7337 1.2439 5 6 3.5642 -0.5638 1.3174 6 7 4.1795 -0.9194 0.0447 7 6 3.5210 -0.9793 -1.1134 8 8 4.1474 -1.2476 -2.1166 9 6 2.0453 -0.7319 -1.2417 10 1 1.5257 -1.6850 -1.3404 11 7 1.7906 0.0866 -2.4297 12 6 1.6675 -0.4987 -3.6375 13 8 1.7673 -1.7060 -3.7410 14 6 1.4115 0.3256 -4.8340 15 6 1.2956 1.7128 -4.7198 16 6 1.0559 2.4773 -5.8413 17 6 0.9296 1.8767 -7.0835 18 6 1.0472 0.5074 -7.2126 19 6 1.2827 -0.2791 -6.0931 20 8 1.3932 -1.6241 -6.2169 21 6 1.3808 -2.1266 -7.4678 22 1 1.2041 -1.4742 -8.3101 23 6 1.5948 -3.4816 -7.6730 24 7 1.5823 -3.9719 -8.8933 25 14 1.9009 -4.6100 -6.2161 26 1 3.3582 -4.6752 -5.9382 27 1 1.1926 -4.0811 -5.0230 28 1 1.3952 -5.9707 -6.5292 29 1 -0.3634 -1.0276 0.0093 30 1 -0.3634 0.5218 0.8853 31 1 -0.3633 0.5057 -0.8946 32 1 1.7999 -1.7931 1.1726 33 1 1.5874 -0.3108 2.1376 34 1 3.9613 -1.2081 2.1019 35 1 3.7997 0.4737 1.5539 36 1 5.1273 -1.1256 0.0399 37 1 1.7107 1.0497 -2.3471 38 1 1.3928 2.1857 -3.7537 39 1 0.9669 3.5499 -5.7514 40 1 0.7423 2.4839 -7.9568 41 1 0.9516 0.0470 -8.1849 42 1 1.7316 -4.9196 -9.0368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194281249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = -68.133746 kcal Electronic energy + Delta-G solvation = -27227.583226 eV Core-core repulsion = 23366.450000 eV Total energy + Delta-G solvation = -3861.133227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76946 -39.48522 -37.96616 -36.93665 -36.46006 -34.85210 -32.72639 -32.38554 -30.65905 -29.21162 -29.13764 -27.46187 -25.24467 -24.02494 -22.84786 -21.82374 -21.24781 -20.03973 -19.63053 -17.87354 -17.73989 -17.33081 -16.56863 -16.30170 -16.12699 -15.01456 -14.69482 -14.48734 -14.38251 -14.21608 -14.15577 -13.79966 -13.63532 -13.56987 -13.31074 -12.95336 -12.78239 -12.39523 -12.29147 -12.10558 -11.96332 -11.61937 -11.35030 -11.22640 -11.18318 -11.04982 -10.76662 -10.64943 -10.01248 -9.98022 -9.55313 -9.16125 -8.99428 -8.82612 -8.68143 -8.33213 -7.42118 -6.41358 -4.05956 1.63575 2.24051 2.62351 3.10876 3.37018 3.47617 3.56836 3.69666 3.73511 4.26404 4.33228 4.43104 4.44690 4.49275 4.63650 4.79893 4.95969 5.02361 5.10074 5.15926 5.29874 5.35210 5.41503 5.42583 5.53258 5.55310 5.62516 5.70020 5.85916 5.98923 6.03198 6.08766 6.42563 6.56673 6.64687 6.76291 6.87357 7.05276 7.19497 7.25219 7.53289 7.72340 7.94759 8.00807 8.28149 8.92949 8.97187 9.58454 10.63693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.004806 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.694864 B = 5824.243546 C = 7250.664451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.728 5.728 7 C 0.497 3.503 8 O -0.518 6.518 9 C 0.146 3.854 10 H 0.118 0.882 11 N -0.725 5.725 12 C 0.567 3.433 13 O -0.501 6.501 14 C -0.222 4.222 15 C -0.041 4.041 16 C -0.222 4.222 17 C -0.051 4.051 18 C -0.227 4.227 19 C 0.202 3.798 20 O -0.165 6.165 21 C -0.396 4.396 22 H 0.108 0.892 23 C 0.073 3.927 24 N -0.870 5.870 25 Si 0.900 3.100 26 H -0.273 1.273 27 H -0.239 1.239 28 H -0.287 1.287 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.396 0.604 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 11.821 21.780 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.383 5.383 7 C 0.281 3.719 8 O -0.391 6.391 9 C 0.037 3.963 10 H 0.135 0.865 11 N -0.381 5.381 12 C 0.357 3.643 13 O -0.375 6.375 14 C -0.227 4.227 15 C -0.060 4.060 16 C -0.241 4.241 17 C -0.070 4.070 18 C -0.246 4.246 19 C 0.144 3.856 20 O -0.065 6.065 21 C -0.471 4.471 22 H 0.126 0.874 23 C -0.133 4.133 24 N -0.506 5.506 25 Si 0.725 3.275 26 H -0.199 1.199 27 H -0.162 1.162 28 H -0.213 1.213 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.231 0.769 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.631 10.380 21.120 23.542 hybrid contribution 0.612 -0.030 0.455 0.763 sum -0.019 10.350 21.575 23.929 Atomic orbital electron populations 1.21818 0.93369 1.02773 1.02412 1.21535 0.97413 0.99946 0.93028 0.89898 1.21947 0.94368 1.02131 0.98410 1.21347 0.93816 1.00663 0.85526 1.45594 1.13266 1.71792 1.07632 1.20872 0.91103 0.77019 0.82896 1.90858 1.67561 1.45689 1.35018 1.20671 0.91331 0.98217 0.86102 0.86483 1.45632 1.76511 1.09849 1.06100 1.18138 0.76086 0.87838 0.82238 1.90858 1.47682 1.14047 1.84919 1.18816 1.19316 0.93061 0.91478 1.20735 0.95911 0.91572 0.97786 1.20516 1.11879 0.98798 0.92877 1.20949 0.95098 0.94101 0.96860 1.21281 1.09853 0.93926 0.99516 1.19013 0.90696 0.83960 0.91935 1.83791 1.75949 1.15785 1.30925 1.20926 1.50248 0.94401 0.81481 0.87449 1.24479 0.94668 0.96530 0.97596 1.69642 1.45798 1.15099 1.20090 0.86200 0.80110 0.77993 0.83213 1.19862 1.16182 1.21348 0.92107 0.92099 0.91685 0.90477 0.89196 0.90614 0.91790 0.76818 0.76875 0.87004 0.87053 0.86862 0.84427 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.12 37.15 0.34 -0.78 16 2 C -0.10 -0.81 2.30 -90.39 -0.21 -1.02 16 3 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 4 C -0.13 -0.78 5.32 -26.58 -0.14 -0.92 16 5 C 0.11 0.67 7.17 -4.48 -0.03 0.64 16 6 N -0.73 -7.58 5.45 -61.39 -0.33 -7.92 16 7 C 0.50 7.64 7.44 -11.87 -0.09 7.55 16 8 O -0.52 -11.14 16.58 4.65 0.08 -11.07 16 9 C 0.15 1.99 2.07 -69.30 -0.14 1.85 16 10 H 0.12 1.84 7.52 -51.93 -0.39 1.45 16 11 N -0.73 -11.23 4.65 -56.19 -0.26 -11.49 16 12 C 0.57 12.17 7.20 -12.47 -0.09 12.08 16 13 O -0.50 -13.24 14.40 -19.00 -0.27 -13.52 16 14 C -0.22 -4.73 5.89 -104.81 -0.62 -5.35 16 15 C -0.04 -0.68 9.54 -39.20 -0.37 -1.06 16 16 C -0.22 -3.54 10.02 -39.61 -0.40 -3.94 16 17 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 18 C -0.23 -4.96 9.16 -39.44 -0.36 -5.32 16 19 C 0.20 4.98 6.66 -38.60 -0.26 4.72 16 20 O -0.16 -4.73 6.67 -21.06 -0.14 -4.87 16 21 C -0.40 -11.73 9.95 30.91 0.31 -11.42 16 22 H 0.11 3.15 5.44 -52.49 -0.29 2.87 16 23 C 0.07 2.17 5.49 -17.51 -0.10 2.07 16 24 N -0.87 -26.04 13.96 55.48 0.77 -25.27 16 25 Si 0.90 24.40 28.62 -169.99 -4.86 19.53 16 26 H -0.27 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.24 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.57 7.97 -51.93 -0.41 0.15 16 32 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.40 3.88 8.80 -40.82 -0.36 3.52 16 37 H 0.40 4.78 6.62 -40.82 -0.27 4.51 16 38 H 0.11 1.39 6.40 -52.49 -0.34 1.05 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.14 3.11 5.64 -52.48 -0.30 2.82 16 42 H 0.28 7.79 8.31 -40.82 -0.34 7.46 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -38.42 348.74 -7.61 -46.03 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.29 Total: 5.52 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.56 Total: -2.21 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.18 Total: -44.68 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.34 Total: -29.45 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.86 Total: 19.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.42 -7.61 -46.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194281249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.106 kcal (2) G-P(sol) polarization free energy of solvation -38.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds