Wall clock time and date at job start Tue Mar 31 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.45041 * 2 1 4 4 C 1.53044 * 109.45871 * 240.03643 * 2 1 3 5 5 C 1.53187 * 109.31299 * 178.61440 * 4 2 1 6 6 N 1.46926 * 108.77606 * 54.63454 * 5 4 2 7 7 S 1.65598 * 120.62890 * 126.36949 * 6 5 4 8 8 O 1.42101 * 104.28071 * 333.92817 * 7 6 5 9 9 O 1.42103 * 104.27787 * 206.07286 * 7 6 5 10 10 C 1.81403 * 104.45114 * 89.99841 * 7 6 5 11 11 C 1.52994 * 109.47158 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.47119 * 179.97438 * 11 10 7 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.46923 * 118.73874 * 306.64552 * 6 5 4 22 22 H 1.09000 * 109.58440 * 173.14398 * 21 6 5 23 23 C 1.50707 * 109.58274 * 293.56695 * 21 6 5 24 24 N 1.34776 * 119.99503 * 179.97438 * 23 21 6 25 25 O 1.21282 * 120.00210 * 0.02562 * 23 21 6 26 26 C 1.52762 * 109.00945 * 53.30860 * 21 6 5 27 27 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46862 * 299.96013 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.96466 * 1 2 3 30 30 H 1.09007 * 109.49654 * 58.65831 * 4 2 1 31 31 H 1.09005 * 109.52521 * 298.58504 * 4 2 1 32 32 H 1.09003 * 109.58700 * 294.84719 * 5 4 2 33 33 H 1.09005 * 109.70331 * 174.49280 * 5 4 2 34 34 H 1.08998 * 109.46785 * 60.00241 * 10 7 6 35 35 H 1.08994 * 109.46954 * 300.00048 * 10 7 6 36 36 H 1.09004 * 109.46806 * 60.00263 * 11 10 7 37 37 H 1.09000 * 109.47828 * 300.00567 * 11 10 7 38 38 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 39 39 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 0.96997 * 120.00346 * 0.02562 * 24 23 21 42 42 H 0.97003 * 120.00005 * 180.02562 * 24 23 21 43 43 H 1.08998 * 109.55940 * 185.55548 * 26 21 6 44 44 H 1.08998 * 109.35777 * 65.50051 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2502 5 6 3.5714 -0.6886 -1.2644 6 7 4.0679 -1.2489 -0.0001 7 16 5.1658 -2.4886 -0.0003 8 8 4.9448 -3.1523 -1.2371 9 8 4.9452 -3.1521 1.2368 10 6 6.7810 -1.6629 -0.0007 11 6 7.8916 -2.7151 -0.0002 12 6 9.2539 -2.0187 -0.0012 13 6 10.3479 -3.0551 -0.0014 14 1 10.0968 -4.1055 -0.0012 15 6 11.6697 -2.6624 -0.0080 16 7 11.9755 -1.3833 -0.0086 17 14 13.0256 -3.9471 -0.0160 18 1 13.3778 -4.2865 -1.4181 19 1 14.2225 -3.4078 0.6783 20 1 12.5548 -5.1683 0.6856 21 6 3.5672 -0.6924 1.2641 22 1 3.9347 -1.2909 2.0977 23 6 4.0409 0.7305 1.4125 24 7 3.6995 1.4440 2.5038 25 8 4.7285 1.2339 0.5495 26 6 2.0399 -0.7209 1.2500 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5132 0.8904 29 1 -0.3634 0.5143 -0.8896 30 1 1.6571 -0.2206 -2.1399 31 1 1.6978 -1.7556 -1.2390 32 1 3.9143 0.3410 -1.3674 33 1 3.9437 -1.2830 -2.0988 34 1 6.8708 -1.0400 0.8892 35 1 6.8704 -1.0401 -0.8907 36 1 7.8020 -3.3384 -0.8900 37 1 7.8021 -3.3377 0.8900 38 1 9.3439 -1.3951 0.8883 39 1 9.3433 -1.3965 -0.8916 40 1 12.9054 -1.1070 -0.0129 41 1 3.1493 1.0415 3.1938 42 1 4.0041 2.3600 2.5991 43 1 1.6574 -0.2208 2.1398 44 1 1.6979 -1.7557 1.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249443316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:43 Heat of formation + Delta-G solvation = -132.940339 kcal Electronic energy + Delta-G solvation = -26030.496652 eV Core-core repulsion = 22301.997152 eV Total energy + Delta-G solvation = -3728.499500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52740 -37.83705 -36.97851 -35.76934 -34.60977 -34.24966 -33.81647 -32.13849 -31.35875 -28.14894 -27.69101 -24.68206 -23.67432 -23.25588 -21.37300 -20.66984 -20.11820 -18.81146 -17.88078 -17.36328 -16.70122 -16.51215 -15.98712 -15.67823 -15.47322 -14.83219 -14.56420 -14.48744 -14.37711 -14.23994 -14.05813 -13.73113 -12.93551 -12.58175 -12.52406 -12.26136 -12.18098 -12.01698 -11.94007 -11.84060 -11.72563 -11.70984 -11.20296 -11.14341 -10.89372 -10.84599 -10.80515 -10.64974 -10.45438 -10.20013 -9.90822 -9.90039 -9.41591 -9.17045 -8.86027 -8.37137 -6.01698 -4.04918 0.43505 2.40767 2.61479 3.28305 3.32706 3.38537 3.42624 4.00106 4.22817 4.29853 4.37916 4.45404 4.48975 4.63281 4.81663 4.84892 5.08725 5.22870 5.26021 5.26912 5.31411 5.34036 5.35868 5.48458 5.49379 5.61154 5.76732 5.81278 5.89437 5.97332 6.03320 6.15441 6.29048 6.41857 6.52019 6.55289 6.92281 7.06446 7.62551 7.72638 7.96569 8.03474 8.36831 9.01447 9.59385 11.09502 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.003241 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.602464 B = 8636.206942 C = 9165.565659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.112 3.888 6 N -0.981 5.981 7 S 2.597 3.403 8 O -0.955 6.955 9 O -0.962 6.962 10 C -0.602 4.602 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.130 3.870 22 H 0.129 0.871 23 C 0.505 3.495 24 N -0.855 5.855 25 O -0.523 6.523 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.401 0.599 42 H 0.402 0.598 43 H 0.078 0.922 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.418 6.378 3.929 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.164 4.164 5 C -0.013 4.013 6 N -0.816 5.816 7 S 2.695 3.305 8 O -0.946 6.946 9 O -0.953 6.953 10 C -0.735 4.735 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.019 3.981 22 H 0.147 0.853 23 C 0.287 3.713 24 N -0.420 5.420 25 O -0.398 6.398 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.229 0.771 42 H 0.233 0.767 43 H 0.096 0.904 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.070 5.711 3.229 25.914 hybrid contribution 1.102 0.349 0.476 1.250 sum -23.968 6.060 3.705 24.998 Atomic orbital electron populations 1.21811 0.94712 1.01996 1.01721 1.21125 0.95782 0.99610 0.94744 0.91012 1.21922 0.95417 1.01364 0.97716 1.21584 0.94258 1.00838 0.84632 1.57662 1.58911 1.54673 1.10318 1.05514 0.76510 0.74239 0.74225 1.93559 1.84589 1.71374 1.45044 1.93538 1.84750 1.71678 1.45323 1.30536 1.18753 1.12614 1.11561 1.21511 0.95829 0.95390 1.01776 1.19053 0.88141 0.95725 0.97798 1.21263 0.90985 0.93145 1.51020 0.92380 1.25030 0.98892 0.95341 0.95160 1.69971 1.18313 1.14497 1.50592 0.86554 0.81380 0.81677 0.78186 1.20570 1.21193 1.19750 1.20825 0.96439 0.92196 0.88680 0.85350 1.21150 0.79611 0.88860 0.81668 1.43883 1.56827 1.17868 1.23443 1.90758 1.36980 1.71459 1.40564 1.21854 0.91934 1.02888 0.98756 0.92469 0.92713 0.92519 0.90679 0.91181 0.89947 0.88564 0.85677 0.85157 0.91638 0.91724 0.96163 0.96058 0.92919 0.77084 0.76655 0.90366 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.71 2.52 -90.57 -0.23 -0.94 16 3 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 4 C -0.13 -1.11 5.36 -26.61 -0.14 -1.26 16 5 C 0.11 1.27 5.98 -3.71 -0.02 1.25 16 6 N -0.98 -12.27 2.64 -107.93 -0.29 -12.56 16 7 S 2.60 40.90 5.45 -107.50 -0.59 40.31 16 8 O -0.96 -17.22 16.59 -57.54 -0.95 -18.18 16 9 O -0.96 -16.67 16.58 -57.54 -0.95 -17.63 16 10 C -0.60 -10.45 6.18 37.15 0.23 -10.22 16 11 C -0.11 -2.26 5.16 -26.74 -0.14 -2.40 16 12 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 13 C -0.53 -15.20 9.11 -34.44 -0.31 -15.52 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.13 1.31 3.00 -68.97 -0.21 1.10 16 22 H 0.13 1.23 6.85 -51.93 -0.36 0.88 16 23 C 0.50 5.30 6.30 -10.98 -0.07 5.23 16 24 N -0.86 -5.41 8.73 31.22 0.27 -5.13 16 25 O -0.52 -7.60 15.58 5.56 0.09 -7.51 16 26 C -0.12 -0.84 4.76 -26.83 -0.13 -0.97 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.98 6.63 -51.93 -0.34 0.63 16 33 H 0.10 1.13 6.86 -51.93 -0.36 0.78 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.40 1.28 8.22 -40.82 -0.34 0.94 16 42 H 0.40 2.28 8.93 -40.82 -0.36 1.91 16 43 H 0.08 0.35 7.44 -51.93 -0.39 -0.04 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -37.07 363.75 -9.28 -46.34 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.14 Total: 0.39 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -0.91 Total: -21.98 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.72 Total: -44.18 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.82 Total: -43.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 40.90 SS G_CDS: -0.59 Total: 40.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.07 -9.28 -46.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249443316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.597 kcal (2) G-P(sol) polarization free energy of solvation -37.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds