Wall clock time and date at job start Tue Mar 31 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46133 * 2 1 4 4 C 1.53036 * 109.44607 * 119.97027 * 2 1 3 5 5 C 1.52764 * 109.38108 * 181.25634 * 4 2 1 6 6 N 1.46931 * 109.00734 * 305.58230 * 5 4 2 7 7 S 1.65600 * 120.63312 * 233.58611 * 6 5 4 8 8 O 1.42099 * 104.27336 * 336.64630 * 7 6 5 9 9 O 1.42095 * 104.27813 * 208.78621 * 7 6 5 10 10 C 1.81400 * 104.44773 * 92.71529 * 7 6 5 11 11 C 1.52998 * 109.47167 * 179.97438 * 10 7 6 12 12 C 1.52999 * 109.47683 * 179.97438 * 11 10 7 13 13 C 1.50697 * 109.47403 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00009 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99951 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47309 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.46873 * 300.00055 * 17 15 13 20 20 H 1.48498 * 109.47251 * 59.99728 * 17 15 13 21 21 C 1.46928 * 118.73661 * 53.31129 * 6 5 4 22 22 H 1.08994 * 109.58755 * 66.42974 * 21 6 5 23 23 C 1.50694 * 109.58764 * 186.85740 * 21 6 5 24 24 N 1.34779 * 119.99838 * 232.98370 * 23 21 6 25 25 O 1.21287 * 120.00305 * 52.97931 * 23 21 6 26 26 C 1.53041 * 109.46006 * 240.02917 * 2 1 3 27 27 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47081 * 299.97315 * 1 2 3 29 29 H 1.09001 * 109.46788 * 59.97530 * 1 2 3 30 30 H 1.09000 * 109.49693 * 301.32669 * 4 2 1 31 31 H 1.08994 * 109.50013 * 61.39673 * 4 2 1 32 32 H 1.09003 * 109.50961 * 185.70729 * 5 4 2 33 33 H 1.08991 * 109.43609 * 65.41900 * 5 4 2 34 34 H 1.09005 * 109.47060 * 60.00348 * 10 7 6 35 35 H 1.08999 * 109.47458 * 300.00022 * 10 7 6 36 36 H 1.09009 * 109.47272 * 60.00050 * 11 10 7 37 37 H 1.09004 * 109.47396 * 300.00490 * 11 10 7 38 38 H 1.09009 * 109.46613 * 59.99784 * 12 11 10 39 39 H 1.08999 * 109.46779 * 300.00822 * 12 11 10 40 40 H 0.97000 * 120.00007 * 359.97438 * 16 15 13 41 41 H 0.96995 * 120.00232 * 359.97438 * 24 23 21 42 42 H 0.97003 * 119.99854 * 180.02562 * 24 23 21 43 43 H 1.09001 * 109.50011 * 58.67310 * 26 2 1 44 44 H 1.09001 * 109.49781 * 298.58135 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5669 -0.6927 1.2645 6 7 4.0677 -1.2494 0.0003 7 16 5.1653 -2.4893 0.0004 8 8 5.8017 -2.3937 1.2673 9 8 5.8985 -2.3085 -1.2033 10 6 4.1518 -3.9910 -0.0911 11 6 5.0619 -5.2209 -0.0986 12 6 4.2071 -6.4875 -0.1752 13 6 5.1036 -7.6988 -0.1832 14 1 6.1757 -7.5774 -0.1386 15 6 4.5549 -8.9621 -0.2485 16 7 3.2493 -9.1098 -0.3044 17 14 5.6660 -10.4636 -0.2578 18 1 4.8364 -11.6929 -0.3335 19 1 6.5695 -10.4035 -1.4348 20 1 6.4756 -10.4880 0.9869 21 6 3.5715 -0.6890 -1.2640 22 1 3.9145 0.3404 -1.3671 23 6 4.0833 -1.5130 -2.4172 24 7 4.7296 -0.9155 -3.4379 25 8 3.9139 -2.7140 -2.4268 26 6 2.0399 -0.7209 -1.2500 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5142 -0.8898 30 1 1.6569 -0.2208 2.1398 31 1 1.6969 -1.7555 1.2386 32 1 3.9342 -1.2913 2.0981 33 1 3.9096 0.3363 1.3718 34 1 3.5579 -3.9734 -1.0050 35 1 3.4883 -4.0348 0.7726 36 1 5.6561 -5.2387 0.8151 37 1 5.7251 -5.1769 -0.9625 38 1 3.6125 -6.4698 -1.0887 39 1 3.5442 -6.5312 0.6890 40 1 2.6723 -8.3301 -0.2992 41 1 4.8648 0.0450 -3.4304 42 1 5.0588 -1.4459 -4.1804 43 1 1.6574 -0.2208 -2.1399 44 1 1.6976 -1.7557 -1.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249443320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:44 Heat of formation + Delta-G solvation = -127.564095 kcal Electronic energy + Delta-G solvation = -26588.345142 eV Core-core repulsion = 22860.078773 eV Total energy + Delta-G solvation = -3728.266369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43194 -38.31431 -36.67838 -35.72170 -34.76518 -34.03405 -33.80290 -32.10953 -31.56156 -28.11273 -27.28251 -24.73099 -23.48645 -23.10998 -21.23995 -20.75411 -20.24170 -18.89133 -17.95575 -17.20127 -16.93814 -16.51309 -16.33100 -15.68682 -15.11325 -14.95053 -14.56058 -14.48708 -14.18690 -14.09420 -13.72650 -13.67690 -13.32842 -13.09615 -12.39731 -12.21867 -11.93383 -11.90096 -11.86339 -11.75912 -11.68031 -11.58477 -11.28460 -11.25759 -11.02584 -10.71796 -10.70107 -10.58015 -10.07036 -10.02623 -9.77960 -9.70968 -9.67164 -9.13866 -8.45902 -8.27116 -6.31246 -3.99628 0.51575 2.31284 2.78569 3.27017 3.48661 3.51301 3.69632 4.04047 4.25336 4.30780 4.45799 4.52839 4.60080 4.66893 4.72707 4.87200 4.92268 5.21691 5.23976 5.29618 5.36154 5.38946 5.43521 5.46903 5.51894 5.56242 5.70775 5.80088 5.84133 5.92933 6.04920 6.11686 6.28090 6.40249 6.51856 6.83892 6.89707 7.18076 7.42497 7.56004 8.17569 8.25920 8.51836 8.93398 9.72390 11.09585 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003793 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.652462 B = 7379.968151 C = 7686.607794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.136 4.136 5 C 0.122 3.878 6 N -0.993 5.993 7 S 2.599 3.401 8 O -0.967 6.967 9 O -0.954 6.954 10 C -0.604 4.604 11 C -0.092 4.092 12 C 0.020 3.980 13 C -0.604 4.604 14 H 0.050 0.950 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.070 2.930 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.141 3.859 22 H 0.092 0.908 23 C 0.523 3.477 24 N -0.834 5.834 25 O -0.535 6.535 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.268 0.732 41 H 0.398 0.602 42 H 0.408 0.592 43 H 0.078 0.922 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 25.841 -1.732 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.175 4.175 5 C -0.003 4.003 6 N -0.830 5.830 7 S 2.698 3.302 8 O -0.957 6.957 9 O -0.944 6.944 10 C -0.737 4.737 11 C -0.132 4.132 12 C -0.018 4.018 13 C -0.643 4.643 14 H 0.068 0.932 15 C -0.189 4.189 16 N -0.550 5.550 17 Si 0.898 3.102 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.214 1.214 21 C 0.031 3.969 22 H 0.110 0.890 23 C 0.306 3.694 24 N -0.396 5.396 25 O -0.413 6.413 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.226 0.774 42 H 0.239 0.761 43 H 0.096 0.904 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.638 23.594 -1.570 23.924 hybrid contribution -0.392 1.798 -0.289 1.863 sum -4.030 25.392 -1.859 25.777 Atomic orbital electron populations 1.21830 0.94601 1.02323 1.01749 1.21046 0.95903 0.99336 0.94206 0.90823 1.21995 0.95276 1.02069 0.98173 1.21370 0.94146 1.00187 0.84591 1.57902 1.63078 1.52072 1.09995 1.05428 0.75082 0.75970 0.73717 1.93538 1.72942 1.86119 1.43131 1.93507 1.69238 1.84566 1.47054 1.30739 1.14465 1.16214 1.12270 1.21270 0.97295 0.93197 1.01407 1.19150 0.95205 0.91122 0.96364 1.22089 0.94187 0.92424 1.55569 0.93161 1.25869 0.98185 1.01099 0.93727 1.70777 1.03432 1.34024 1.46739 0.83541 0.74653 0.75457 0.76577 1.20757 1.21396 1.21391 1.20821 0.95930 0.97635 0.82492 0.89027 1.20247 0.76854 0.88304 0.83963 1.43493 1.59559 1.12136 1.24402 1.90740 1.57728 1.14316 1.78482 1.21975 0.92051 1.03210 0.98841 0.92306 0.92429 0.92599 0.90311 0.90878 0.88513 0.90965 0.82572 0.86637 0.92257 0.91691 0.96876 0.97250 0.92151 0.77382 0.76059 0.90372 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.60 2.68 -90.58 -0.24 -0.84 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.14 -1.07 5.34 -26.83 -0.14 -1.22 16 5 C 0.12 1.18 6.30 -3.93 -0.02 1.15 16 6 N -0.99 -12.10 3.23 -107.94 -0.35 -12.45 16 7 S 2.60 44.09 4.73 -107.50 -0.51 43.58 16 8 O -0.97 -18.45 16.63 -57.54 -0.96 -19.40 16 9 O -0.95 -17.88 13.99 -66.90 -0.94 -18.82 16 10 C -0.60 -11.34 5.72 37.16 0.21 -11.13 16 11 C -0.09 -2.14 5.16 -26.73 -0.14 -2.28 16 12 C 0.02 0.55 4.28 -27.89 -0.12 0.43 16 13 C -0.60 -18.30 9.11 -34.44 -0.31 -18.61 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -29.00 13.65 55.43 0.76 -28.24 16 17 Si 1.07 26.36 29.90 -169.99 -5.08 21.27 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.14 1.42 3.29 -68.75 -0.23 1.19 16 22 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 23 C 0.52 6.71 4.33 -10.99 -0.05 6.66 16 24 N -0.83 -7.71 8.87 31.22 0.28 -7.43 16 25 O -0.53 -9.20 12.50 -17.97 -0.22 -9.42 16 26 C -0.12 -1.02 4.63 -26.61 -0.12 -1.14 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.02 7.02 -51.93 -0.36 0.65 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.16 3.00 5.43 -51.92 -0.28 2.72 16 35 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 36 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.01 0.37 8.01 -51.92 -0.42 -0.04 16 39 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 40 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 41 H 0.40 2.13 8.69 -40.82 -0.35 1.77 16 42 H 0.41 3.72 8.93 -40.82 -0.36 3.35 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -38.95 356.95 -9.74 -48.70 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.18 Total: 2.87 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -0.92 Total: -26.03 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.69 Total: -48.12 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -2.12 Total: -47.64 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.27 kcal Atomic # 16 Polarization: 44.09 SS G_CDS: -0.51 Total: 43.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.95 -9.74 -48.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249443320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.867 kcal (2) G-P(sol) polarization free energy of solvation -38.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds