Wall clock time and date at job start Tue Mar 31 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.47105 * 119.99929 * 2 1 4 4 O 1.21616 * 120.00013 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00224 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00172 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47156 * 180.02562 * 6 5 3 8 8 N 1.46495 * 109.47156 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00172 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08001 * 119.99762 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00358 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00191 * 180.02562 * 2 1 3 30 30 H 0.97005 * 119.99604 * 0.02562 * 5 3 2 31 31 H 1.08998 * 109.47323 * 59.99722 * 6 5 3 32 32 H 1.09005 * 109.46890 * 299.99941 * 6 5 3 33 33 H 1.08998 * 109.47672 * 59.99396 * 7 6 5 34 34 H 1.09005 * 109.46733 * 299.99498 * 7 6 5 35 35 H 0.97005 * 120.00223 * 359.97438 * 8 7 6 36 36 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 37 37 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2740 0.0005 6 6 4.1456 2.5427 0.0011 7 6 5.6499 2.2632 0.0010 8 7 6.3824 3.5319 0.0021 9 6 7.7301 3.5320 0.0028 10 8 8.3366 2.4816 0.0019 11 6 8.4836 4.8371 0.0034 12 6 9.9652 4.5617 0.0034 13 6 10.6438 4.4362 -1.1951 14 6 12.0016 4.1844 -1.1985 15 6 12.6856 4.0566 0.0035 16 8 14.0205 3.8096 0.0034 17 6 14.6436 3.8133 -1.1922 18 1 14.0696 3.9257 -2.1001 19 6 16.0216 3.6727 -1.2563 20 7 16.7210 3.5363 -0.1504 21 14 16.8850 3.6786 -2.9127 22 1 16.6234 4.9671 -3.6029 23 1 18.3469 3.5143 -2.7095 24 1 16.3714 2.5593 -3.7426 25 6 12.0003 4.1769 1.2053 26 6 10.6435 4.4345 1.2020 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8700 -0.9353 -0.0004 30 1 3.8982 0.4339 0.0005 31 1 3.8819 3.1142 0.8910 32 1 3.8826 3.1145 -0.8889 33 1 5.9133 1.6920 -0.8892 34 1 5.9132 1.6913 0.8908 35 1 5.8974 4.3720 0.0025 36 1 8.2199 5.4084 0.8935 37 1 8.2207 5.4089 -0.8865 38 1 10.1114 4.5360 -2.1294 39 1 12.5310 4.0869 -2.1348 40 1 17.6849 3.4376 -0.1952 41 1 12.5286 4.0737 2.1416 42 1 10.1108 4.5326 2.1363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264775332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:53 Heat of formation + Delta-G solvation = -56.083294 kcal Electronic energy + Delta-G solvation = -24271.392777 eV Core-core repulsion = 20410.782097 eV Total energy + Delta-G solvation = -3860.610680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21927 -39.75288 -38.77764 -36.66643 -36.07096 -34.18361 -33.39436 -32.45504 -31.47085 -30.12083 -29.42616 -26.61103 -25.17028 -24.16919 -22.53812 -21.93955 -21.20576 -20.25018 -20.07538 -17.98194 -17.94036 -17.14530 -16.92746 -16.33171 -16.25509 -15.78767 -15.31731 -14.74826 -14.63659 -14.56200 -14.26342 -13.99863 -13.86324 -13.70741 -13.41349 -13.39766 -12.67915 -12.59994 -12.38890 -12.25351 -12.19866 -11.78307 -11.47674 -11.23456 -10.82406 -10.73097 -10.61630 -10.48389 -10.41232 -10.34989 -9.79040 -9.60253 -9.30143 -9.26697 -8.78917 -8.11524 -7.13230 -6.41615 -4.00252 0.90464 2.23577 2.28798 2.54321 2.72066 2.85336 3.15352 3.15859 3.19059 3.36372 3.99658 4.16918 4.38352 4.57419 4.57948 4.62252 4.94209 5.00235 5.09364 5.14064 5.25962 5.29264 5.34962 5.44487 5.52389 5.68110 5.71087 5.75936 5.76304 5.88199 5.89392 6.21551 6.25132 6.45324 6.73720 6.94876 6.98045 7.08505 7.26785 7.36323 7.40261 7.48507 7.72950 7.87533 8.03549 8.25299 9.03921 9.74759 10.76423 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.001721 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.203551 B =16261.153040 C =16587.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.216 4.216 3 C 0.544 3.456 4 O -0.544 6.544 5 N -0.723 5.723 6 C 0.109 3.891 7 C 0.109 3.891 8 N -0.739 5.739 9 C 0.511 3.489 10 O -0.518 6.518 11 C -0.079 4.079 12 C -0.172 4.172 13 C -0.056 4.056 14 C -0.233 4.233 15 C 0.157 3.843 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.192 4.192 26 C -0.059 4.059 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.406 0.594 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.117 0.883 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.914 -2.995 -0.279 28.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.237 4.237 3 C 0.333 3.667 4 O -0.423 6.423 5 N -0.375 5.375 6 C -0.016 4.016 7 C -0.016 4.016 8 N -0.394 5.394 9 C 0.298 3.702 10 O -0.392 6.392 11 C -0.118 4.118 12 C -0.173 4.173 13 C -0.074 4.074 14 C -0.252 4.252 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.078 4.078 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.240 0.760 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.427 -3.093 -0.033 27.601 hybrid contribution 0.421 -0.160 -0.897 1.003 sum -27.006 -3.253 -0.929 27.217 Atomic orbital electron populations 1.24783 0.95362 1.03474 0.89373 1.22750 0.96489 0.96850 1.07605 1.18722 0.81863 0.90090 0.76027 1.90808 1.68245 1.33362 1.49891 1.45708 1.06455 1.09616 1.75751 1.21449 0.90294 0.86515 1.03297 1.21336 0.89401 0.87610 1.03211 1.45894 1.06825 1.08591 1.78121 1.21112 0.81159 0.92551 0.75410 1.90756 1.67752 1.33577 1.47066 1.20396 0.93401 0.94022 1.04022 1.18629 0.92400 1.12561 0.93743 1.20506 0.93708 0.97077 0.96155 1.21104 0.94664 1.11041 0.98399 1.19392 0.85344 0.91676 0.93285 1.83975 1.14960 1.76276 1.32941 1.21283 0.90231 1.52148 0.83140 0.89136 1.25281 0.95373 0.96602 0.99242 1.70030 1.07341 1.45440 1.27014 0.85786 0.78311 0.79137 0.80213 1.19523 1.20294 1.19533 1.20154 0.94061 1.10685 0.96215 1.20401 0.93234 0.97818 0.96309 0.86543 0.86744 0.85360 0.75956 0.90629 0.90644 0.90907 0.90904 0.76497 0.88830 0.88872 0.87827 0.85593 0.92013 0.86543 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 14.31 28.91 0.41 -0.01 16 2 C -0.22 -1.15 10.03 -37.80 -0.38 -1.53 16 3 C 0.54 4.54 7.76 -12.66 -0.10 4.45 16 4 O -0.54 -6.67 16.22 5.26 0.09 -6.58 16 5 N -0.72 -4.56 5.55 -61.49 -0.34 -4.91 16 6 C 0.11 0.72 5.79 -4.04 -0.02 0.70 16 7 C 0.11 0.85 5.79 -4.04 -0.02 0.83 16 8 N -0.74 -6.41 5.56 -60.29 -0.33 -6.75 16 9 C 0.51 6.65 7.82 -10.98 -0.09 6.56 16 10 O -0.52 -9.38 16.03 5.55 0.09 -9.29 16 11 C -0.08 -0.94 5.83 -29.04 -0.17 -1.11 16 12 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 13 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 14 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 15 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 16 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 17 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.63 13.67 55.48 0.76 -24.88 16 21 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 27 H 0.12 0.22 8.06 -52.49 -0.42 -0.20 16 28 H 0.11 0.67 7.49 -52.49 -0.39 0.27 16 29 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 30 H 0.41 1.59 8.46 -40.82 -0.35 1.24 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 2.26 8.47 -40.82 -0.35 1.91 16 36 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -37.59 372.14 -7.00 -44.59 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.43 Total: 4.56 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.41 Total: -12.90 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.08 Total: -36.53 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.59 -7.00 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264775332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.489 kcal (2) G-P(sol) polarization free energy of solvation -37.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds