Wall clock time and date at job start Tue Mar 31 2020 05:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.47105 * 119.99929 * 2 1 4 4 O 1.21616 * 120.00013 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00224 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00172 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47156 * 180.02562 * 6 5 3 8 8 C 1.50702 * 109.47105 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99960 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99776 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08001 * 119.99762 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00358 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00191 * 180.02562 * 2 1 3 30 30 H 0.97005 * 119.99604 * 0.02562 * 5 3 2 31 31 H 1.08998 * 109.47323 * 59.99722 * 6 5 3 32 32 H 1.09005 * 109.46890 * 299.99941 * 6 5 3 33 33 H 1.08998 * 109.47672 * 59.99396 * 7 6 5 34 34 H 1.09005 * 109.46733 * 299.99498 * 7 6 5 35 35 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 37 37 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2740 0.0005 6 6 4.1456 2.5427 0.0011 7 6 5.6499 2.2632 0.0010 8 6 6.4034 3.5683 0.0022 9 8 5.7970 4.6186 0.0026 10 7 7.7511 3.5683 0.0018 11 6 8.4836 4.8371 0.0024 12 6 9.9652 4.5617 0.0024 13 6 10.6438 4.4362 -1.1961 14 6 12.0016 4.1843 -1.1995 15 6 12.6856 4.0566 0.0024 16 8 14.0205 3.8096 0.0024 17 6 14.6436 3.8133 -1.1933 18 1 14.0696 3.9256 -2.1011 19 6 16.0216 3.6727 -1.2573 20 7 16.7210 3.5363 -0.1514 21 14 16.8850 3.6785 -2.9137 22 1 16.6233 4.9671 -3.6039 23 1 18.3469 3.5143 -2.7106 24 1 16.3714 2.5593 -3.7436 25 6 12.0003 4.1769 1.2043 26 6 10.6435 4.4345 1.2009 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8700 -0.9353 -0.0004 30 1 3.8982 0.4339 0.0005 31 1 3.8819 3.1142 0.8910 32 1 3.8826 3.1145 -0.8889 33 1 5.9133 1.6920 -0.8892 34 1 5.9132 1.6913 0.8908 35 1 8.2362 2.7283 0.0011 36 1 8.2205 5.4080 0.8928 37 1 8.2201 5.4092 -0.8871 38 1 10.1114 4.5360 -2.1305 39 1 12.5309 4.0868 -2.1358 40 1 17.6849 3.4376 -0.1962 41 1 12.5287 4.0737 2.1405 42 1 10.1108 4.5326 2.1353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269498039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:30 Heat of formation + Delta-G solvation = -62.014277 kcal Electronic energy + Delta-G solvation = -24165.234482 eV Core-core repulsion = 20304.366615 eV Total energy + Delta-G solvation = -3860.867866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19604 -39.66522 -39.06689 -36.95659 -35.55558 -34.48399 -33.35758 -32.42688 -31.44114 -30.33192 -29.76219 -26.25508 -25.35224 -24.25726 -22.47615 -22.10560 -20.75127 -20.69336 -19.96800 -18.12873 -17.92343 -17.31568 -17.03714 -16.31125 -16.04389 -15.75762 -15.24569 -14.74725 -14.66011 -14.64619 -14.32800 -13.93900 -13.81958 -13.72307 -13.51176 -13.30071 -12.83656 -12.76254 -12.31020 -12.26053 -12.16002 -11.81684 -11.69102 -11.44316 -11.00130 -10.84333 -10.76150 -10.53437 -10.35802 -10.26840 -9.97995 -9.47933 -9.42072 -9.05257 -8.94460 -8.33914 -7.37769 -6.56635 -4.15785 0.99610 2.00097 2.07824 2.53255 2.72056 2.97492 3.05898 3.07284 3.10378 3.42984 3.87167 4.27655 4.43943 4.49772 4.63303 4.70174 4.74456 4.97380 5.07280 5.13122 5.14988 5.21900 5.36666 5.54272 5.60945 5.65921 5.75148 5.79442 5.85547 5.88032 6.05722 6.07292 6.29734 6.41456 6.54927 6.75271 6.90620 7.08802 7.12464 7.21937 7.30488 7.48673 7.66658 7.87662 7.87764 8.14350 8.88445 9.55978 10.60645 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.001698 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.842695 B =16483.152651 C =16845.525630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.215 4.215 3 C 0.540 3.460 4 O -0.541 6.541 5 N -0.728 5.728 6 C 0.134 3.866 7 C -0.155 4.155 8 C 0.513 3.487 9 O -0.543 6.543 10 N -0.720 5.720 11 C 0.178 3.822 12 C -0.216 4.216 13 C -0.050 4.050 14 C -0.237 4.237 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.395 4.395 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.195 4.195 26 C -0.054 4.054 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.401 0.599 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.272 0.728 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.235 -8.926 -0.368 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.236 4.236 3 C 0.329 3.671 4 O -0.420 6.420 5 N -0.380 5.380 6 C 0.010 3.990 7 C -0.195 4.195 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.372 5.372 11 C 0.056 3.944 12 C -0.218 4.218 13 C -0.069 4.069 14 C -0.256 4.256 15 C 0.105 3.895 16 O -0.075 6.075 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.215 4.215 26 C -0.073 4.073 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.235 0.765 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.634 -7.449 -0.116 23.829 hybrid contribution 1.159 -0.936 -0.882 1.731 sum -21.475 -8.386 -0.998 23.076 Atomic orbital electron populations 1.24773 0.95416 1.03412 0.89655 1.22770 0.96492 0.96870 1.07445 1.18719 0.82063 0.90005 0.76336 1.90825 1.68231 1.33350 1.49555 1.45904 1.06499 1.09776 1.75781 1.21044 0.88593 0.85143 1.04197 1.21821 0.95276 0.97195 1.05232 1.20297 0.82650 0.90750 0.76505 1.90741 1.68177 1.33463 1.49710 1.46351 1.05745 1.10608 1.74484 1.19993 0.87767 0.84688 1.01923 1.19199 0.93822 1.15059 0.93713 1.20641 0.93661 0.96199 0.96428 1.21160 0.94663 1.11324 0.98502 1.19444 0.85367 0.91321 0.93318 1.83976 1.14971 1.75375 1.33181 1.21313 0.90279 1.52469 0.83029 0.88950 1.25321 0.95370 0.96290 0.99413 1.70022 1.07571 1.44502 1.27158 0.85761 0.78366 0.79259 0.79958 1.19399 1.20178 1.19435 1.20215 0.94062 1.10870 0.96312 1.20534 0.93182 0.97019 0.96578 0.86645 0.86745 0.85502 0.76458 0.90406 0.90421 0.88137 0.88138 0.76308 0.91460 0.91499 0.87400 0.85410 0.91786 0.86358 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 14.31 28.91 0.41 -0.09 16 2 C -0.21 -1.29 10.03 -37.80 -0.38 -1.67 16 3 C 0.54 5.19 7.76 -12.66 -0.10 5.09 16 4 O -0.54 -7.69 16.22 5.26 0.09 -7.61 16 5 N -0.73 -5.26 5.55 -61.49 -0.34 -5.60 16 6 C 0.13 1.24 4.96 -4.04 -0.02 1.22 16 7 C -0.15 -1.09 5.81 -27.88 -0.16 -1.25 16 8 C 0.51 5.81 7.83 -10.99 -0.09 5.72 16 9 O -0.54 -8.47 15.98 5.56 0.09 -8.38 16 10 N -0.72 -7.89 5.55 -61.47 -0.34 -8.23 16 11 C 0.18 2.35 5.80 -5.19 -0.03 2.32 16 12 C -0.22 -3.30 5.25 -104.58 -0.55 -3.85 16 13 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 14 C -0.24 -4.77 9.17 -39.39 -0.36 -5.13 16 15 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 16 O -0.17 -4.70 9.76 0.05 0.00 -4.70 16 17 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 18 H 0.09 2.27 5.20 -52.49 -0.27 1.99 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16 21 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.20 -3.81 9.99 -39.39 -0.39 -4.21 16 26 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 27 H 0.12 0.28 8.06 -52.49 -0.42 -0.14 16 28 H 0.11 0.78 7.49 -52.49 -0.39 0.38 16 29 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 30 H 0.40 1.48 8.46 -40.82 -0.35 1.13 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 3.70 8.46 -40.82 -0.35 3.35 16 36 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -34.48 372.04 -7.09 -41.57 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.43 Total: 6.43 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.50 Total: -10.22 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.08 Total: -37.37 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.48 -7.09 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269498039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.445 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds