Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.51392 * 2 1 4 4 O 1.42967 * 109.50923 * 120.10249 * 2 1 3 5 5 C 1.42960 * 114.16209 * 182.49987 * 4 2 1 6 6 C 1.53288 * 109.22692 * 297.41985 * 5 4 2 7 7 N 1.47154 * 108.38648 * 52.30351 * 6 5 4 8 8 C 1.34777 * 120.98453 * 129.44442 * 7 6 5 9 9 O 1.21539 * 119.99833 * 184.19968 * 8 7 6 10 10 C 1.47879 * 119.99733 * 4.20033 * 8 7 6 11 11 C 1.39924 * 120.02917 * 22.96855 * 10 8 7 12 12 C 1.38330 * 120.35975 * 179.74112 * 11 10 8 13 13 C 1.37747 * 120.41211 * 0.55566 * 12 11 10 14 14 C 1.40751 * 120.04209 * 359.70114 * 13 12 11 15 15 C 1.41439 * 120.18340 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99240 * 335.14607 * 15 14 13 17 17 C 1.39936 * 120.00202 * 155.14407 * 15 14 13 18 18 N 1.30825 * 119.99813 * 342.79396 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 162.79972 * 17 15 14 20 20 H 1.48497 * 109.47299 * 59.99248 * 19 17 15 21 21 H 1.48495 * 109.47282 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46835 * 299.99874 * 19 17 15 23 23 C 1.38999 * 120.02667 * 203.23836 * 10 8 7 24 24 C 1.47155 * 118.03333 * 309.46586 * 7 6 5 25 25 H 1.09000 * 109.71000 * 290.79567 * 24 7 6 26 26 C 1.50693 * 109.67964 * 170.25863 * 24 7 6 27 27 N 1.34775 * 120.00224 * 113.02956 * 26 24 7 28 28 O 1.21282 * 119.99984 * 293.01867 * 26 24 7 29 29 H 1.09005 * 109.46984 * 299.89584 * 1 2 3 30 30 H 1.08992 * 109.47095 * 59.89472 * 1 2 3 31 31 H 1.08995 * 109.47157 * 179.90134 * 1 2 3 32 32 H 1.08997 * 109.51402 * 57.34601 * 5 4 2 33 33 H 1.09006 * 109.51335 * 177.49460 * 5 4 2 34 34 H 1.09003 * 109.68348 * 292.57708 * 6 5 4 35 35 H 1.09003 * 109.71769 * 172.04552 * 6 5 4 36 36 H 1.07997 * 119.82097 * 359.97438 * 11 10 8 37 37 H 1.08004 * 119.79144 * 180.29901 * 12 11 10 38 38 H 1.08004 * 119.98300 * 179.72154 * 13 12 11 39 39 H 0.97007 * 119.99586 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.20003 * 359.96410 * 23 10 8 41 41 H 0.96998 * 120.00153 * 359.97438 * 27 26 24 42 42 H 0.97000 * 119.99876 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 8 2.0075 -0.6759 1.1658 5 6 3.4312 -0.6850 1.2951 6 6 4.0405 -1.4459 0.1120 7 7 3.5011 -0.8768 -1.1332 8 6 4.3193 -0.5045 -2.1374 9 8 3.8616 0.0334 -3.1265 10 6 5.7739 -0.7506 -2.0358 11 6 6.2569 -1.7529 -1.1873 12 6 7.6159 -1.9926 -1.0910 13 6 8.5100 -1.2401 -1.8202 14 6 8.0433 -0.2240 -2.6750 15 6 8.9587 0.5501 -3.4256 16 1 9.9763 0.6656 -3.0827 17 6 8.5460 1.1660 -4.6123 18 7 7.4491 0.7721 -5.2066 19 14 9.5613 2.5507 -5.3481 20 1 10.9258 2.0534 -5.6577 21 1 8.9145 3.0296 -6.5961 22 1 9.6510 3.6694 -4.3756 23 6 6.6629 0.0173 -2.7789 24 6 2.0420 -0.7259 -1.2494 25 1 1.5752 -1.7083 -1.3203 26 6 1.7117 0.0828 -2.4773 27 7 1.0719 -0.4954 -3.5131 28 8 2.0214 1.2541 -2.5335 29 1 -0.3633 0.5122 0.8910 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 3.8030 0.3396 1.2993 33 1 3.7091 -1.1778 2.2268 34 1 3.7755 -2.5011 0.1785 35 1 5.1252 -1.3384 0.1251 36 1 5.5647 -2.3452 -0.6072 37 1 7.9784 -2.7718 -0.4368 38 1 9.5699 -1.4302 -1.7363 39 1 7.1631 1.1989 -6.0295 40 1 6.2948 0.7945 -3.4322 41 1 0.8243 -1.4322 -3.4683 42 1 0.8596 0.0251 -4.3036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284925049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = -59.799967 kcal Electronic energy + Delta-G solvation = -27769.753097 eV Core-core repulsion = 23908.981250 eV Total energy + Delta-G solvation = -3860.771847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88428 -38.50018 -38.24872 -36.89093 -34.75241 -33.74992 -33.36773 -32.83885 -30.35001 -29.56420 -28.74150 -27.02447 -25.43975 -23.77261 -22.43053 -21.90925 -20.85944 -20.32124 -18.99557 -17.79004 -17.06937 -16.92561 -16.52345 -15.83417 -15.71763 -15.58285 -15.09028 -14.88908 -14.50063 -14.25453 -13.98931 -13.58009 -13.23040 -13.02454 -12.84514 -12.79821 -12.66435 -12.47556 -12.10655 -11.81665 -11.67631 -11.34352 -11.23253 -11.14459 -10.86411 -10.69061 -10.32644 -10.13405 -10.00535 -9.64218 -9.50329 -9.31434 -9.25578 -8.84658 -8.36224 -7.67475 -7.55225 -6.83511 -4.46413 2.15658 2.70051 2.75707 3.05136 3.07155 3.12372 3.41351 3.46347 3.75592 3.87786 3.88896 4.54072 4.56157 4.87774 4.93080 5.04030 5.11985 5.20727 5.30987 5.40081 5.47037 5.51741 5.62331 5.74918 5.86678 5.90165 5.97475 6.04455 6.21112 6.54239 6.68578 6.92897 6.96117 7.04495 7.09863 7.15552 7.31953 7.54412 7.58421 7.67580 7.79897 7.92182 8.11537 8.44201 8.60185 8.74879 8.77234 8.82462 10.10204 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.004411 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.257753 B = 6345.768742 C = 7456.436011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.077 0.923 4 O -0.377 6.377 5 C 0.043 3.957 6 C 0.038 3.962 7 N -0.609 5.609 8 C 0.561 3.439 9 O -0.506 6.506 10 C -0.119 4.119 11 C -0.252 4.252 12 C -0.093 4.093 13 C -0.214 4.214 14 C 0.102 3.898 15 C -0.458 4.458 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.779 5.779 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.093 4.093 24 C 0.098 3.902 25 H 0.087 0.913 26 C 0.544 3.456 27 N -0.854 5.854 28 O -0.525 6.525 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.286 0.714 40 H 0.132 0.868 41 H 0.393 0.607 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 -4.971 8.300 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.095 0.905 4 O -0.296 6.296 5 C -0.034 4.034 6 C -0.083 4.083 7 N -0.347 5.347 8 C 0.353 3.647 9 O -0.382 6.382 10 C -0.122 4.122 11 C -0.271 4.271 12 C -0.112 4.112 13 C -0.234 4.234 14 C 0.099 3.901 15 C -0.487 4.487 16 H 0.100 0.900 17 C -0.148 4.148 18 N -0.402 5.402 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.113 4.113 24 C -0.009 4.009 25 H 0.105 0.895 26 C 0.329 3.671 27 N -0.418 5.418 28 O -0.400 6.400 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.170 0.830 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.149 0.851 41 H 0.221 0.779 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.275 -3.956 7.791 14.264 hybrid contribution 0.417 0.160 -0.943 1.044 sum -10.857 -3.796 6.848 13.386 Atomic orbital electron populations 1.21766 0.92214 1.03039 1.03106 1.22289 0.95308 0.95955 0.83558 0.90545 1.87914 1.21660 1.77525 1.42487 1.23147 0.80619 1.00878 0.98767 1.23773 1.04509 0.97215 0.82839 1.48009 1.03539 1.65561 1.17554 1.19126 0.87467 0.76341 0.81717 1.90747 1.75062 1.41383 1.30979 1.19301 0.89702 1.01201 1.02034 1.21024 0.95502 1.04479 1.06127 1.20478 0.93168 0.98523 0.98982 1.21110 0.97749 0.99604 1.04923 1.17589 0.91968 0.89985 0.90520 1.19594 0.98196 1.26107 1.04774 0.89999 1.25991 0.95209 0.96800 0.96750 1.69783 1.20485 1.34946 1.15016 0.86309 0.80306 0.81213 0.78649 1.18891 1.20170 1.18658 1.21609 0.92502 0.99477 0.97718 1.21788 0.83830 0.99750 0.95582 0.89545 1.19491 0.76102 0.87753 0.83730 1.43616 1.63344 1.14999 1.19847 1.90730 1.51017 1.17448 1.80824 0.90999 0.90938 0.91505 0.92311 0.87500 0.90890 0.83013 0.86353 0.88735 0.88588 0.90266 0.85066 0.77930 0.76787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 2 C 0.09 1.22 2.79 -26.58 -0.07 1.15 16 3 H 0.08 1.24 7.78 -51.93 -0.40 0.83 16 4 O -0.38 -5.03 10.38 -35.23 -0.37 -5.40 16 5 C 0.04 0.53 6.98 37.31 0.26 0.79 16 6 C 0.04 0.54 4.88 -3.54 -0.02 0.52 16 7 N -0.61 -10.71 3.02 -167.15 -0.50 -11.21 16 8 C 0.56 12.57 7.42 -12.31 -0.09 12.48 16 9 O -0.51 -12.87 12.44 -18.85 -0.23 -13.10 16 10 C -0.12 -2.80 5.64 -105.04 -0.59 -3.39 16 11 C -0.25 -5.08 7.57 -38.92 -0.29 -5.37 16 12 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 13 C -0.21 -4.95 9.78 -38.81 -0.38 -5.33 16 14 C 0.10 2.67 5.57 -106.87 -0.60 2.07 16 15 C -0.46 -11.97 9.05 -37.73 -0.34 -12.31 16 16 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 18 N -0.78 -20.84 10.94 55.55 0.61 -20.23 16 19 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 24 C 0.10 1.49 2.95 -68.57 -0.20 1.29 16 25 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 26 C 0.54 9.45 3.67 -10.99 -0.04 9.41 16 27 N -0.85 -11.28 8.87 31.22 0.28 -11.00 16 28 O -0.53 -11.65 15.68 -18.63 -0.29 -11.94 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 35 H 0.15 2.29 3.78 -53.90 -0.20 2.09 16 36 H 0.12 1.96 4.56 -52.49 -0.24 1.72 16 37 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.10 2.07 8.06 -52.48 -0.42 1.64 16 39 H 0.29 7.10 8.30 -40.82 -0.34 6.77 16 40 H 0.13 3.85 5.92 -52.49 -0.31 3.54 16 41 H 0.39 3.83 8.69 -40.82 -0.35 3.47 16 42 H 0.40 5.06 8.93 -40.82 -0.36 4.70 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -33.41 339.33 -8.43 -41.84 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.18 Total: 15.27 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.82 Total: -3.19 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.38 Total: -42.44 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.89 Total: -30.44 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.41 -8.43 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284925049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds