Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.51612 * 2 1 4 4 O 1.42969 * 109.51062 * 120.14616 * 2 1 3 5 5 C 1.42970 * 114.16446 * 182.50337 * 4 2 1 6 6 C 1.53711 * 109.14975 * 297.29018 * 5 4 2 7 7 N 1.47157 * 108.16153 * 52.53865 * 6 5 4 8 8 C 1.34772 * 120.98116 * 129.42983 * 7 6 5 9 9 O 1.21592 * 119.99829 * 172.95027 * 8 7 6 10 10 C 1.47645 * 120.00127 * 352.95576 * 8 7 6 11 11 C 1.40016 * 119.89120 * 134.07582 * 10 8 7 12 12 C 1.36324 * 120.09947 * 180.23257 * 11 10 8 13 13 C 1.40891 * 119.89095 * 359.51990 * 12 11 10 14 14 C 1.41110 * 120.09970 * 180.20789 * 13 12 11 15 15 H 1.08003 * 120.00041 * 205.75695 * 14 13 12 16 16 C 1.40227 * 120.00025 * 25.75906 * 14 13 12 17 17 N 1.30647 * 119.99888 * 13.46091 * 16 14 13 18 18 Si 1.86800 * 120.00162 * 193.45580 * 16 14 13 19 19 H 1.48503 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46811 * 120.00189 * 18 16 14 21 21 H 1.48496 * 109.47347 * 240.00418 * 18 16 14 22 22 C 1.40884 * 119.79435 * 0.47863 * 13 12 11 23 23 C 1.36316 * 119.89148 * 359.75346 * 22 13 12 24 24 C 1.47151 * 118.03552 * 309.15779 * 7 6 5 25 25 H 1.09004 * 109.68381 * 291.06748 * 24 7 6 26 26 C 1.50697 * 109.68472 * 170.54480 * 24 7 6 27 27 N 1.34776 * 119.99747 * 116.46896 * 26 24 7 28 28 O 1.21278 * 119.99880 * 296.47591 * 26 24 7 29 29 H 1.08998 * 109.47098 * 180.10744 * 1 2 3 30 30 H 1.08997 * 109.47255 * 300.10321 * 1 2 3 31 31 H 1.08994 * 109.47021 * 60.10712 * 1 2 3 32 32 H 1.09000 * 109.51136 * 57.34584 * 5 4 2 33 33 H 1.09000 * 109.50974 * 177.44144 * 5 4 2 34 34 H 1.08998 * 109.83614 * 292.85770 * 6 5 4 35 35 H 1.08992 * 109.74634 * 172.16112 * 6 5 4 36 36 H 1.07998 * 119.95087 * 359.95527 * 11 10 8 37 37 H 1.07994 * 120.05054 * 179.74558 * 12 11 10 38 38 H 0.97009 * 119.99872 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.05352 * 179.77421 * 22 13 12 40 40 H 1.08006 * 119.94479 * 179.97438 * 23 22 13 41 41 H 0.96996 * 120.00146 * 359.97438 * 27 26 24 42 42 H 0.97000 * 119.99572 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6768 1.1653 5 6 3.4313 -0.6860 1.2946 6 6 4.0403 -1.4511 0.1087 7 7 3.5012 -0.8758 -1.1338 8 6 4.3194 -0.5034 -2.1380 9 8 3.8522 -0.1507 -3.2037 10 6 5.7829 -0.5239 -1.9440 11 6 6.6093 -1.0815 -2.9272 12 6 7.9608 -1.1069 -2.7503 13 6 8.5262 -0.5618 -1.5806 14 6 9.9249 -0.5818 -1.3951 15 1 10.3375 -0.5677 -0.3970 16 6 10.7792 -0.6201 -2.5064 17 7 10.3092 -0.3739 -3.7003 18 14 12.5891 -1.0228 -2.2799 19 1 12.8670 -1.2604 -0.8405 20 1 12.9256 -2.2430 -3.0565 21 1 13.4135 0.1142 -2.7624 22 6 7.6904 -0.0019 -0.5943 23 6 6.3398 0.0147 -0.7779 24 6 2.0421 -0.7248 -1.2500 25 1 1.5758 -1.7075 -1.3213 26 6 1.7116 0.0842 -2.4777 27 7 1.0110 -0.4746 -3.4844 28 8 2.0762 1.2379 -2.5599 29 1 -0.3633 -1.0276 0.0019 30 1 -0.3633 0.5154 0.8890 31 1 -0.3633 0.5121 -0.8909 32 1 3.8030 0.3387 1.2997 33 1 3.7090 -1.1786 2.2264 34 1 3.7718 -2.5056 0.1718 35 1 5.1251 -1.3465 0.1211 36 1 6.1751 -1.4961 -3.8249 37 1 8.5972 -1.5408 -3.5073 38 1 10.9003 -0.3999 -4.4691 39 1 8.1192 0.4138 0.3056 40 1 5.6982 0.4433 -0.0221 41 1 0.7199 -1.3975 -3.4188 42 1 0.7986 0.0461 -4.2748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285444766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -86.297756 kcal Electronic energy + Delta-G solvation = -27405.275444 eV Core-core repulsion = 23543.354567 eV Total energy + Delta-G solvation = -3861.920877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83679 -38.45239 -38.27441 -36.99044 -34.54215 -33.88701 -33.46031 -32.83992 -30.22553 -29.67040 -28.68958 -27.35074 -25.52126 -23.63192 -22.07742 -21.63495 -21.24266 -20.31823 -18.94675 -17.63365 -17.33595 -17.01621 -16.84245 -16.03383 -15.70189 -15.52226 -15.17953 -14.61608 -14.46823 -14.25550 -14.04171 -13.59401 -13.41678 -13.01479 -12.87717 -12.70641 -12.56638 -12.37924 -12.16958 -11.95877 -11.77023 -11.42854 -11.29177 -11.25586 -11.01388 -10.84411 -10.60207 -10.21278 -10.04988 -9.61452 -9.55443 -9.41679 -9.36160 -8.95878 -8.35959 -7.73644 -7.53684 -6.97254 -4.61087 2.26457 2.69793 2.90130 2.95078 2.97090 3.01072 3.39095 3.47648 3.56530 3.75948 3.84070 4.44992 4.56247 4.84980 4.89051 5.00907 5.07539 5.19141 5.28196 5.41772 5.45663 5.49825 5.69692 5.70850 5.82842 5.90938 5.96763 6.06062 6.20106 6.59106 6.78543 6.82825 7.00026 7.00757 7.02939 7.09443 7.41131 7.52132 7.53802 7.67391 7.83773 7.93001 8.06082 8.41764 8.55179 8.63654 8.73121 8.81811 9.93693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003427 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.963201 B = 8167.461228 C = 8979.476746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.076 0.924 4 O -0.375 6.375 5 C 0.045 3.955 6 C 0.068 3.932 7 N -0.613 5.613 8 C 0.578 3.422 9 O -0.530 6.530 10 C -0.271 4.271 11 C -0.045 4.045 12 C -0.174 4.174 13 C 0.125 3.875 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.776 5.776 18 Si 0.915 3.085 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.230 4.230 23 C -0.056 4.056 24 C 0.099 3.901 25 H 0.086 0.914 26 C 0.546 3.454 27 N -0.852 5.852 28 O -0.530 6.530 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.394 0.606 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -4.736 6.147 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.094 0.906 4 O -0.294 6.294 5 C -0.033 4.033 6 C -0.054 4.054 7 N -0.351 5.351 8 C 0.373 3.627 9 O -0.407 6.407 10 C -0.276 4.276 11 C -0.064 4.064 12 C -0.193 4.193 13 C 0.122 3.878 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.149 4.149 17 N -0.399 5.399 18 Si 0.739 3.261 19 H -0.181 1.181 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.249 4.249 23 C -0.075 4.075 24 C -0.009 4.009 25 H 0.104 0.896 26 C 0.331 3.669 27 N -0.417 5.417 28 O -0.405 6.405 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.221 0.779 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -13.176 -3.853 5.570 14.814 hybrid contribution 0.826 -0.343 -0.531 1.040 sum -12.349 -4.195 5.039 13.982 Atomic orbital electron populations 1.21767 0.92176 1.03112 1.03092 1.22308 0.95332 0.95909 0.83688 0.90634 1.87929 1.21504 1.77459 1.42469 1.23150 0.80679 1.00765 0.98683 1.22790 1.02536 0.97258 0.82863 1.48117 1.03351 1.65436 1.18162 1.18929 0.87454 0.74304 0.82030 1.90663 1.75751 1.48052 1.26221 1.18702 0.89199 1.19501 1.00155 1.20355 0.93749 0.97030 0.95315 1.21083 0.92816 1.04757 1.00671 1.17771 0.93142 0.86201 0.90731 1.19838 0.91042 1.42302 0.94077 0.89807 1.26096 1.02112 0.92136 0.94552 1.69741 1.38271 1.31859 1.00074 0.86144 0.80886 0.79031 0.80083 1.18147 1.19470 1.19704 1.20672 0.92815 1.09360 1.02061 1.20294 0.95031 0.97676 0.94461 1.21753 0.84129 0.99692 0.95332 0.89609 1.19522 0.76357 0.87351 0.83663 1.43595 1.59903 1.16859 1.21299 1.90731 1.51104 1.18638 1.80041 0.91435 0.90959 0.90978 0.92260 0.87383 0.91006 0.85945 0.88923 0.85700 0.90320 0.88336 0.88972 0.77863 0.76849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.41 37.16 0.35 -1.08 16 2 C 0.09 1.16 2.81 -26.58 -0.07 1.08 16 3 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 4 O -0.37 -4.88 10.38 -35.23 -0.37 -5.24 16 5 C 0.04 0.54 6.94 37.53 0.26 0.80 16 6 C 0.07 0.96 5.85 -3.31 -0.02 0.94 16 7 N -0.61 -10.55 3.01 -166.98 -0.50 -11.05 16 8 C 0.58 12.52 6.92 -12.42 -0.09 12.43 16 9 O -0.53 -12.81 13.21 -18.43 -0.24 -13.06 16 10 C -0.27 -6.18 5.09 -104.73 -0.53 -6.71 16 11 C -0.05 -1.09 9.62 -39.61 -0.38 -1.47 16 12 C -0.17 -4.38 8.62 -39.27 -0.34 -4.72 16 13 C 0.12 3.13 5.58 -106.80 -0.60 2.54 16 14 C -0.44 -10.96 9.06 -37.75 -0.34 -11.31 16 15 H 0.08 1.95 7.89 -52.48 -0.41 1.54 16 16 C 0.07 1.68 5.22 -17.31 -0.09 1.59 16 17 N -0.78 -19.11 10.77 55.56 0.60 -18.51 16 18 Si 0.91 17.41 29.58 -169.99 -5.03 12.38 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.23 -5.24 9.73 -39.27 -0.38 -5.62 16 23 C -0.06 -1.19 7.29 -39.61 -0.29 -1.48 16 24 C 0.10 1.46 2.94 -68.57 -0.20 1.25 16 25 H 0.09 1.05 7.93 -51.93 -0.41 0.63 16 26 C 0.55 9.10 3.61 -10.99 -0.04 9.06 16 27 N -0.85 -10.50 8.87 31.22 0.28 -10.22 16 28 O -0.53 -11.41 15.87 -18.16 -0.29 -11.70 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 32 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.90 4.37 -51.93 -0.23 1.67 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.13 3.23 6.07 -52.49 -0.32 2.91 16 38 H 0.29 6.34 8.29 -40.82 -0.34 6.01 16 39 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 40 H 0.09 1.73 6.72 -52.48 -0.35 1.38 16 41 H 0.39 3.49 8.68 -40.82 -0.35 3.14 16 42 H 0.40 4.65 8.93 -40.82 -0.36 4.28 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -32.47 342.46 -8.47 -40.94 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -5.32 Total: 14.00 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.76 Total: -2.69 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.37 Total: -39.79 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.90 Total: -30.00 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.47 -8.47 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285444766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.357 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds