Wall clock time and date at job start Tue Mar 31 2020 04:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47399 * 2 1 4 4 H 1.08996 * 109.47147 * 305.00376 * 3 2 1 5 5 N 1.46506 * 109.46774 * 65.00046 * 3 2 1 6 6 C 1.34776 * 119.99579 * 205.00190 * 5 3 2 7 7 O 1.21718 * 120.00351 * 359.97438 * 6 5 3 8 8 C 1.46255 * 119.99828 * 180.02562 * 6 5 3 9 9 C 1.35017 * 120.00339 * 179.97438 * 8 6 5 10 10 C 1.46957 * 120.00375 * 179.97438 * 9 8 6 11 11 C 1.40020 * 120.09981 * 359.72645 * 10 9 8 12 12 C 1.37598 * 119.89802 * 179.69642 * 11 10 9 13 13 C 1.39182 * 120.09810 * 0.59971 * 12 11 10 14 14 O 1.35574 * 119.89479 * 179.70001 * 13 12 11 15 15 C 1.34782 * 116.99966 * 174.42652 * 14 13 12 16 16 H 1.08004 * 119.99630 * 5.04619 * 15 14 13 17 17 C 1.38718 * 120.00274 * 185.05312 * 15 14 13 18 18 N 1.31506 * 119.99671 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99935 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47057 * 60.00474 * 19 17 15 21 21 H 1.48502 * 109.46889 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47658 * 300.00322 * 19 17 15 23 23 C 1.39169 * 120.20260 * 359.67231 * 13 12 11 24 24 C 1.37593 * 120.10440 * 0.02765 * 23 13 12 25 25 C 1.50696 * 109.47158 * 185.00050 * 3 2 1 26 26 N 1.34776 * 120.00168 * 59.99962 * 25 3 2 27 27 O 1.21291 * 119.99871 * 239.99993 * 25 3 2 28 28 H 1.08994 * 109.47104 * 300.00244 * 1 2 3 29 29 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46926 * 60.00034 * 1 2 3 31 31 H 1.09002 * 109.47472 * 120.00429 * 2 1 3 32 32 H 1.09004 * 109.47098 * 239.99750 * 2 1 3 33 33 H 0.96992 * 120.00007 * 24.99769 * 5 3 2 34 34 H 1.08005 * 119.99754 * 359.97438 * 8 6 5 35 35 H 1.08005 * 119.99907 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.05107 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.95310 * 180.27235 * 12 11 10 38 38 H 0.97001 * 119.99700 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.94894 * 180.02562 * 23 13 12 40 40 H 1.08004 * 120.05183 * 180.02562 * 24 23 13 41 41 H 0.96993 * 119.99949 * 0.02562 * 26 25 3 42 42 H 0.97001 * 119.99475 * 179.97438 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 1.5257 3.4384 1.2996 7 8 1.7336 4.1053 0.3029 8 6 1.1393 4.0923 2.5495 9 6 1.0127 5.4357 2.5976 10 6 0.6240 6.0927 3.8533 11 6 0.3787 5.3271 4.9997 12 6 0.0210 5.9471 6.1749 13 6 -0.1092 7.3320 6.2218 14 8 -0.4678 7.9381 7.3804 15 6 -0.4646 9.2858 7.3923 16 1 -0.2641 9.8334 6.4832 17 6 -0.7185 9.9696 8.5722 18 7 -0.9630 9.3028 9.6790 19 14 -0.7133 11.8375 8.5889 20 1 -1.7476 12.3438 7.6512 21 1 -1.0108 12.3211 9.9611 22 1 0.6218 12.3327 8.1676 23 6 0.1280 8.0965 5.0834 24 6 0.4921 7.4857 3.9055 25 6 3.5419 1.4442 -0.1238 26 7 4.1298 0.8910 -1.2031 27 8 4.2217 1.9435 0.7478 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.4871 1.5660 2.0462 34 1 0.9552 3.5005 3.4341 35 1 1.1972 6.0274 1.7131 36 1 0.4745 4.2520 4.9628 37 1 -0.1641 5.3578 7.0608 38 1 -1.1409 9.7810 10.5040 39 1 0.0261 9.1709 5.1246 40 1 0.6764 8.0799 3.0226 41 1 3.5861 0.4921 -1.9004 42 1 5.0965 0.8925 -1.2829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291719658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:57 Heat of formation + Delta-G solvation = -70.358857 kcal Electronic energy + Delta-G solvation = -24818.502881 eV Core-core repulsion = 20957.273166 eV Total energy + Delta-G solvation = -3861.229715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47605 -39.20579 -38.75798 -36.87527 -35.89962 -33.98640 -33.17627 -32.42487 -32.14681 -30.39790 -28.59973 -27.35318 -25.62871 -23.40047 -22.69690 -22.15153 -21.03852 -20.48623 -19.31392 -18.16592 -17.97133 -17.31622 -17.04524 -17.01265 -15.86034 -15.12253 -14.78802 -14.74847 -14.69143 -14.53161 -14.28805 -13.95500 -13.91670 -13.78377 -13.34043 -13.00291 -12.84105 -12.56179 -12.50772 -11.90173 -11.74457 -11.73630 -11.66807 -11.45945 -11.08761 -11.04233 -10.67947 -10.52260 -10.42107 -9.97860 -9.80339 -9.56512 -9.47129 -9.16169 -8.82267 -8.34889 -7.08087 -6.62558 -4.17490 1.11194 2.16798 2.37753 2.56970 2.94180 3.05778 3.07990 3.09803 3.34451 3.69033 3.84558 4.24842 4.45498 4.54505 4.57822 4.81702 4.94894 5.04308 5.07824 5.12884 5.23004 5.31672 5.43331 5.54293 5.57221 5.68353 5.70701 5.79500 6.04336 6.15259 6.21850 6.46836 6.50039 6.52065 6.64354 6.82544 6.94536 7.00040 7.16079 7.26809 7.31125 7.52376 7.67145 7.82766 7.98869 8.34937 8.82145 9.49405 10.54059 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.001964 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.352136 B =14250.952954 C =14546.573866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.129 3.871 4 H 0.115 0.885 5 N -0.711 5.711 6 C 0.565 3.435 7 O -0.558 6.558 8 C -0.278 4.278 9 C 0.038 3.962 10 C -0.198 4.198 11 C -0.043 4.043 12 C -0.200 4.200 13 C 0.167 3.833 14 O -0.163 6.163 15 C -0.393 4.393 16 H 0.097 0.903 17 C 0.041 3.959 18 N -0.853 5.853 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.268 1.268 23 C -0.242 4.242 24 C -0.035 4.035 25 C 0.503 3.497 26 N -0.857 5.857 27 O -0.527 6.527 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.399 0.601 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -17.791 -18.846 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.020 3.980 4 H 0.132 0.868 5 N -0.363 5.363 6 C 0.358 3.642 7 O -0.438 6.438 8 C -0.299 4.299 9 C 0.019 3.981 10 C -0.199 4.199 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.110 3.890 14 O -0.064 6.064 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.485 5.485 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.261 4.261 24 C -0.053 4.053 25 C 0.286 3.714 26 N -0.422 5.422 27 O -0.401 6.401 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.228 0.772 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.640 -16.954 -18.345 25.244 hybrid contribution 0.198 0.434 -0.029 0.478 sum 3.838 -16.520 -18.375 25.005 Atomic orbital electron populations 1.21777 0.94031 1.02224 1.02998 1.21779 0.97690 0.93282 1.03654 1.20834 0.90875 0.95461 0.90871 0.86759 1.45480 1.71192 1.07387 1.12207 1.18386 0.75513 0.81242 0.89108 1.90758 1.51809 1.64062 1.37155 1.22363 1.14673 0.95948 0.96955 1.22271 0.86224 0.93958 0.95691 1.18461 1.14490 0.93339 0.93567 1.20885 0.95391 0.98445 0.91362 1.20152 1.10857 0.92034 0.98831 1.19613 0.90479 0.92180 0.86689 1.83904 1.71189 1.22436 1.28838 1.21423 1.50308 0.77935 0.97215 0.88610 1.25390 0.96038 1.01014 0.94039 1.70005 1.41960 1.36766 0.99812 0.85716 0.79372 0.79904 0.78143 1.19272 1.20105 1.19251 1.21094 1.11094 1.00840 0.93118 1.20988 0.94424 0.93163 0.96767 1.21286 0.91558 0.76982 0.81620 1.43867 1.11456 1.62959 1.23897 1.90781 1.65403 1.43751 1.40156 0.91848 0.92014 0.92200 0.90626 0.90071 0.76079 0.85820 0.85970 0.86385 0.86130 0.91575 0.85134 0.86821 0.77223 0.76865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.80 37.16 0.36 -0.38 16 2 C -0.13 -0.61 5.42 -26.73 -0.14 -0.75 16 3 C 0.13 1.13 2.38 -69.08 -0.16 0.96 16 4 H 0.11 1.05 7.58 -51.93 -0.39 0.65 16 5 N -0.71 -7.70 4.06 -56.38 -0.23 -7.93 16 6 C 0.56 8.35 7.57 -13.04 -0.10 8.26 16 7 O -0.56 -10.05 15.89 5.17 0.08 -9.97 16 8 C -0.28 -4.03 9.41 -37.51 -0.35 -4.39 16 9 C 0.04 0.61 9.45 -37.20 -0.35 0.26 16 10 C -0.20 -3.48 5.87 -105.03 -0.62 -4.10 16 11 C -0.04 -0.75 9.40 -39.15 -0.37 -1.12 16 12 C -0.20 -4.07 9.97 -39.46 -0.39 -4.46 16 13 C 0.17 3.90 6.66 -38.89 -0.26 3.64 16 14 O -0.16 -4.47 9.74 0.73 0.01 -4.46 16 15 C -0.39 -10.56 9.48 30.91 0.29 -10.27 16 16 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.85 -24.07 13.67 55.48 0.76 -23.31 16 19 Si 0.94 19.74 29.55 -169.99 -5.02 14.71 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.24 -5.11 9.14 -39.47 -0.36 -5.47 16 24 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 25 C 0.50 5.35 7.46 -10.99 -0.08 5.27 16 26 N -0.86 -5.10 8.74 31.22 0.27 -4.83 16 27 O -0.53 -8.39 17.16 5.55 0.10 -8.29 16 28 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.21 7.43 -51.93 -0.39 -0.18 16 33 H 0.40 3.44 8.58 -40.82 -0.35 3.09 16 34 H 0.12 1.54 6.07 -52.48 -0.32 1.22 16 35 H 0.12 1.95 7.52 -52.48 -0.39 1.55 16 36 H 0.12 1.70 6.16 -52.49 -0.32 1.37 16 37 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.72 5.62 -52.49 -0.29 2.42 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.40 0.99 8.19 -40.82 -0.33 0.65 16 42 H 0.40 2.15 8.93 -40.82 -0.36 1.79 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -35.55 365.26 -6.63 -42.17 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.08 Total: 8.97 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.01 Total: -12.58 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.80 Total: -36.06 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.18 Total: -22.72 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.55 -6.63 -42.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291719658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.186 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds