Wall clock time and date at job start Tue Mar 31 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47564 * 2 1 4 4 H 1.09009 * 109.46872 * 305.58006 * 3 2 1 5 5 C 1.50697 * 109.47553 * 185.57794 * 3 2 1 6 6 H 1.08001 * 119.99823 * 274.83781 * 5 3 2 7 7 C 1.37870 * 120.00427 * 94.83628 * 5 3 2 8 8 N 1.31507 * 120.00440 * 178.30126 * 7 5 3 9 9 Si 1.86800 * 119.99794 * 358.30350 * 7 5 3 10 10 H 1.48496 * 109.47515 * 84.86558 * 9 7 5 11 11 H 1.48500 * 109.47410 * 204.87058 * 9 7 5 12 12 H 1.48506 * 109.47271 * 324.86695 * 9 7 5 13 13 N 1.46504 * 109.47253 * 65.57136 * 3 2 1 14 14 C 1.34776 * 120.00038 * 275.00546 * 13 3 2 15 15 O 1.21278 * 120.00160 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99693 * 179.97438 * 14 13 3 17 17 N 1.46899 * 109.47124 * 179.97438 * 16 14 13 18 18 C 1.46895 * 110.99946 * 293.95679 * 17 16 14 19 19 C 1.46896 * 111.00047 * 169.99924 * 17 16 14 20 20 H 1.09002 * 109.64283 * 60.13172 * 19 17 16 21 21 C 1.53873 * 109.64778 * 299.69875 * 19 17 16 22 22 C 1.55042 * 106.62511 * 192.96433 * 21 19 17 23 23 S 1.83293 * 102.56515 * 42.43894 * 22 21 19 24 24 O 1.42101 * 109.35334 * 90.18590 * 23 22 21 25 25 O 1.42097 * 109.34954 * 223.38712 * 23 22 21 26 26 C 1.54162 * 109.64445 * 180.42828 * 19 17 16 27 27 H 1.09004 * 109.46946 * 60.00304 * 1 2 3 28 28 H 1.08998 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47285 * 300.00261 * 1 2 3 30 30 H 1.09005 * 109.46536 * 120.00043 * 2 1 3 31 31 H 1.08997 * 109.46869 * 239.99405 * 2 1 3 32 32 H 0.97006 * 120.00683 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99860 * 95.00265 * 13 3 2 34 34 H 1.09003 * 109.46899 * 299.99842 * 16 14 13 35 35 H 1.08997 * 109.47124 * 59.99879 * 16 14 13 36 36 H 1.08999 * 109.47852 * 53.92450 * 18 17 16 37 37 H 1.09008 * 109.47457 * 173.92771 * 18 17 16 38 38 H 1.09004 * 109.47311 * 293.92703 * 18 17 16 39 39 H 1.09002 * 110.02886 * 312.26378 * 21 19 17 40 40 H 1.09006 * 110.02421 * 73.67436 * 21 19 17 41 41 H 1.09007 * 110.79124 * 160.70259 * 22 21 19 42 42 H 1.09000 * 110.79494 * 284.16997 * 22 21 19 43 43 H 1.09006 * 110.31999 * 266.65994 * 26 19 17 44 44 H 1.09000 * 110.32379 * 28.85912 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5407 1.4446 -0.1381 6 1 4.1637 1.3364 0.7374 7 6 4.1184 1.5848 -1.3821 8 7 5.4278 1.6203 -1.4989 9 14 3.0411 1.7244 -2.9017 10 1 2.6286 3.1387 -3.0880 11 1 3.8034 1.2702 -4.0924 12 1 1.8346 0.8751 -2.7329 13 7 1.6644 2.0933 1.2576 14 6 0.4482 2.6598 1.3861 15 8 -0.3349 2.6312 0.4606 16 6 0.0616 3.3288 2.6800 17 7 -1.3017 3.8640 2.5663 18 6 -1.3599 4.9508 1.5798 19 6 -1.8023 4.3115 3.8728 20 1 -1.1543 5.0956 4.2645 21 6 -1.8275 3.1243 4.8514 22 6 -2.6616 3.5776 6.0772 23 16 -4.0684 4.4577 5.2989 24 8 -5.1235 3.5374 5.0562 25 8 -4.3247 5.6595 6.0125 26 6 -3.2363 4.8562 3.7195 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8932 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 5.8343 1.7186 -2.3742 33 1 2.2909 2.1164 1.9978 34 1 0.1003 2.6014 3.4909 35 1 0.7550 4.1433 2.8892 36 1 -0.9487 4.6038 0.6319 37 1 -2.3965 5.2561 1.4361 38 1 -0.7778 5.7995 1.9392 39 1 -2.2966 2.2611 4.3791 40 1 -0.8128 2.8749 5.1619 41 1 -3.0115 2.7166 6.6469 42 1 -2.0849 4.2527 6.7094 43 1 -3.2168 5.9349 3.5636 44 1 -3.7422 4.3623 2.8899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330869672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:46 Heat of formation + Delta-G solvation = -96.547013 kcal Electronic energy + Delta-G solvation = -25664.580637 eV Core-core repulsion = 21937.659271 eV Total energy + Delta-G solvation = -3726.921367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76231 -38.22165 -37.34649 -36.32663 -35.30976 -33.96493 -32.42563 -31.63308 -30.29069 -28.25806 -27.28663 -25.92684 -23.58162 -22.77033 -21.08134 -20.18638 -19.57820 -19.14337 -17.60119 -17.30484 -17.08253 -16.13186 -16.02214 -15.71693 -15.61445 -14.80389 -14.74832 -14.64501 -14.25434 -13.97594 -13.59581 -13.22565 -12.92269 -12.78554 -12.67835 -12.56474 -12.43783 -12.32488 -12.07632 -11.91540 -11.89097 -11.62942 -11.56117 -11.42579 -11.03105 -10.97974 -10.72592 -10.67641 -10.62289 -9.95379 -9.91823 -9.24733 -9.15519 -8.79617 -8.49815 -8.01611 -6.28714 -4.32714 -0.30693 2.15326 3.19363 3.22884 3.23903 3.30205 3.34043 3.37421 3.71251 3.93735 4.07736 4.17738 4.27718 4.37672 4.49328 4.58226 4.97858 5.07586 5.08996 5.12843 5.18017 5.28437 5.42529 5.43396 5.47834 5.53804 5.60107 6.02657 6.07446 6.12444 6.23167 6.60350 6.71278 6.78250 6.81038 6.94257 6.98741 7.25607 7.32997 7.52669 8.09299 8.52419 8.71977 8.95792 9.33516 10.82964 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029381 B = 0.002849 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.766185 B = 9824.883676 C = 9867.641518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.241 3.759 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.535 6.535 16 C 0.025 3.975 17 N -0.509 5.509 18 C 0.016 3.984 19 C 0.091 3.909 20 H 0.064 0.936 21 C -0.121 4.121 22 C -0.585 4.585 23 S 2.392 3.608 24 O -0.934 6.934 25 O -0.942 6.942 26 C -0.589 4.589 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.392 0.608 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 5.538 14.223 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.138 3.862 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.413 6.413 16 C -0.106 4.106 17 N -0.233 5.233 18 C -0.132 4.132 19 C -0.019 4.019 20 H 0.082 0.918 21 C -0.160 4.160 22 C -0.715 4.715 23 S 2.575 3.425 24 O -0.931 6.931 25 O -0.939 6.939 26 C -0.719 4.719 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.094 5.351 13.555 20.981 hybrid contribution 1.337 0.600 -0.500 1.549 sum -13.757 5.952 13.055 19.877 Atomic orbital electron populations 1.21896 0.97229 0.98837 1.02168 1.22097 0.93822 0.99482 1.01148 1.19076 0.95359 0.88983 0.82758 0.93343 1.21014 0.88720 1.51850 0.95402 0.90402 1.24932 0.94892 0.93533 0.98977 1.69874 1.09461 1.48479 1.24735 0.86912 0.81153 0.79492 0.82423 1.19966 1.21231 1.18238 1.46574 1.14356 1.56208 1.18226 1.20205 0.82671 0.79656 0.88920 1.90639 1.50534 1.59135 1.40947 1.22180 0.89822 1.00174 0.98421 1.61752 1.21562 1.34397 1.05631 1.22637 1.02025 0.91108 0.97412 1.21987 0.92984 0.95836 0.91091 0.91780 1.22361 1.02996 0.99191 0.91440 1.30587 1.18309 1.14462 1.08184 1.08984 0.78131 0.76338 0.79077 1.93638 1.50955 1.63805 1.84671 1.93613 1.84434 1.45449 1.70452 1.30690 1.07946 1.10945 1.22286 0.93189 0.95222 0.92878 0.93081 0.92184 0.92215 0.77525 0.87976 0.91933 0.88518 0.91240 0.95992 0.87991 0.88232 0.84194 0.84469 0.84443 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.16 0.32 -2.44 16 2 C -0.13 -2.62 5.46 -26.73 -0.15 -2.77 16 3 C 0.24 5.36 1.83 -69.09 -0.13 5.23 16 4 H 0.05 1.19 5.04 -51.92 -0.26 0.93 16 5 C -0.53 -13.68 9.05 -34.44 -0.31 -13.99 16 6 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 7 C 0.08 2.20 5.47 -17.83 -0.10 2.11 16 8 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 9 Si 0.87 20.98 26.49 -169.99 -4.50 16.48 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.26 -6.06 6.68 56.52 0.38 -5.68 16 13 N -0.70 -12.74 5.03 -54.93 -0.28 -13.02 16 14 C 0.50 8.37 6.10 -10.98 -0.07 8.30 16 15 O -0.53 -10.66 11.49 5.56 0.06 -10.59 16 16 C 0.03 0.29 5.28 -4.97 -0.03 0.26 16 17 N -0.51 -5.68 4.33 -235.05 -1.02 -6.70 16 18 C 0.02 0.18 8.87 60.06 0.53 0.72 16 19 C 0.09 0.70 2.35 -66.65 -0.16 0.54 16 20 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 21 C -0.12 -0.75 5.11 -25.20 -0.13 -0.88 16 22 C -0.59 -2.83 7.31 38.24 0.28 -2.55 16 23 S 2.39 18.01 6.11 -107.50 -0.66 17.36 16 24 O -0.93 -10.72 18.15 -57.71 -1.05 -11.77 16 25 O -0.94 -10.16 18.14 -57.71 -1.05 -11.21 16 26 C -0.59 -4.05 5.47 37.76 0.21 -3.84 16 27 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.31 7.50 -51.93 -0.39 0.92 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.39 6.17 8.59 -40.82 -0.35 5.82 16 34 H 0.10 0.93 6.17 -51.93 -0.32 0.60 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.10 1.45 5.81 -51.93 -0.30 1.15 16 37 H 0.07 0.70 6.86 -51.92 -0.36 0.35 16 38 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.50 7.02 -51.93 -0.36 0.13 16 41 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.15 1.13 7.72 -51.93 -0.40 0.73 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -35.67 353.26 -8.94 -44.61 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.83 Total: 3.64 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 0.28 Total: -9.31 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.52 Total: -44.52 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -2.03 Total: -33.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.50 Total: 16.48 kcal Atomic # 16 Polarization: 18.01 SS G_CDS: -0.66 Total: 17.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.67 -8.94 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330869672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.934 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds