Wall clock time and date at job start Tue Mar 31 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 H 1.09000 * 109.47233 * 54.32950 * 3 2 1 5 5 C 1.50698 * 109.47415 * 174.32741 * 3 2 1 6 6 H 1.08005 * 119.99955 * 25.66883 * 5 3 2 7 7 C 1.37879 * 120.00361 * 205.67861 * 5 3 2 8 8 N 1.31508 * 119.99822 * 353.27029 * 7 5 3 9 9 Si 1.86795 * 120.00133 * 173.27251 * 7 5 3 10 10 H 1.48503 * 109.47446 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47213 * 240.00097 * 9 7 5 12 12 H 1.48498 * 109.47373 * 120.00133 * 9 7 5 13 13 N 1.46502 * 109.47411 * 294.32620 * 3 2 1 14 14 C 1.34772 * 119.99824 * 84.99921 * 13 3 2 15 15 O 1.21289 * 120.00010 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00272 * 180.02562 * 14 13 3 17 17 N 1.46900 * 109.47161 * 180.02562 * 16 14 13 18 18 C 1.46893 * 110.99885 * 66.04839 * 17 16 14 19 19 C 1.46905 * 110.99762 * 190.00144 * 17 16 14 20 20 H 1.09001 * 110.01317 * 53.61855 * 19 17 16 21 21 C 1.53868 * 110.02805 * 175.00006 * 19 17 16 22 22 C 1.54168 * 108.70383 * 166.47232 * 21 19 17 23 23 S 1.82921 * 105.08517 * 332.08825 * 22 21 19 24 24 O 1.42103 * 109.35167 * 115.52521 * 23 22 21 25 25 O 1.42100 * 109.35095 * 248.72609 * 23 22 21 26 26 C 1.55048 * 110.02479 * 292.19334 * 19 17 16 27 27 H 1.09003 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46712 * 299.99593 * 1 2 3 29 29 H 1.08998 * 109.47372 * 59.99875 * 1 2 3 30 30 H 1.09002 * 109.46712 * 240.00407 * 2 1 3 31 31 H 1.08998 * 109.47372 * 120.00125 * 2 1 3 32 32 H 0.97007 * 120.00194 * 354.66999 * 8 7 5 33 33 H 0.96995 * 119.99871 * 265.00146 * 13 3 2 34 34 H 1.08995 * 109.46620 * 300.00299 * 16 14 13 35 35 H 1.09000 * 109.46619 * 59.99766 * 16 14 13 36 36 H 1.08997 * 109.47408 * 59.99955 * 18 17 16 37 37 H 1.09000 * 109.46835 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.47530 * 299.99203 * 18 17 16 39 39 H 1.09002 * 109.64640 * 286.32325 * 21 19 17 40 40 H 1.08999 * 109.65077 * 46.61776 * 21 19 17 41 41 H 1.08992 * 110.31966 * 90.99352 * 22 21 19 42 42 H 1.09004 * 110.31433 * 213.18983 * 22 21 19 43 43 H 1.09000 * 110.79189 * 316.54190 * 26 19 17 44 44 H 1.09000 * 110.79451 * 80.00508 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 0.8349 5 6 3.5404 1.4449 0.1404 6 1 4.1146 0.5898 -0.1846 7 6 4.1802 2.5386 0.6841 8 7 3.4993 3.6299 0.9576 9 14 6.0142 2.4702 1.0321 10 1 6.5436 1.1398 0.6381 11 1 6.2513 2.6870 2.4820 12 1 6.7056 3.5290 0.2537 13 7 1.6663 2.0926 -1.2586 14 6 0.4504 2.6590 -1.3894 15 8 -0.3347 2.6301 -0.4653 16 6 0.0657 3.3273 -2.6842 17 7 -1.2978 3.8624 -2.5729 18 6 -1.3576 4.9499 -1.5872 19 6 -1.7964 4.3092 -3.8805 20 1 -1.7049 3.5040 -4.6095 21 6 -3.2663 4.7483 -3.7621 22 6 -3.6562 5.5199 -5.0386 23 16 -2.0962 6.2597 -5.6428 24 8 -1.7663 5.6971 -6.9053 25 8 -2.1533 7.6710 -5.4876 26 6 -0.9994 5.5510 -4.3567 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.5645 3.6942 0.7063 33 1 2.2940 2.1154 -1.9977 34 1 0.7595 4.1417 -2.8927 35 1 0.1058 2.5994 -3.4946 36 1 -0.6900 5.7552 -1.8936 37 1 -2.3780 5.3281 -1.5250 38 1 -1.0492 4.5736 -0.6117 39 1 -3.9036 3.8704 -3.6554 40 1 -3.3870 5.3941 -2.8923 41 1 -4.0648 4.8372 -5.7835 42 1 -4.3791 6.3009 -4.8027 43 1 -0.8569 6.2565 -3.5381 44 1 -0.0417 5.2552 -4.7850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330869674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:49 Heat of formation + Delta-G solvation = -102.103088 kcal Electronic energy + Delta-G solvation = -25839.521642 eV Core-core repulsion = 22112.359345 eV Total energy + Delta-G solvation = -3727.162296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.66316 -38.21403 -37.31557 -36.29280 -35.26538 -33.80025 -32.27164 -31.51964 -29.73041 -28.24102 -26.56736 -26.07590 -23.90875 -22.95015 -20.66944 -20.11132 -19.42257 -19.11794 -17.53066 -17.32904 -17.03051 -16.07478 -15.95519 -15.52557 -15.32033 -14.91847 -14.70790 -14.46083 -14.08305 -13.87304 -13.61011 -13.16509 -13.00104 -12.77612 -12.62691 -12.55160 -12.40656 -12.31086 -12.11767 -11.96486 -11.71054 -11.37164 -11.18878 -11.07053 -10.89428 -10.86230 -10.74906 -10.65861 -10.35895 -10.23890 -9.81799 -9.13564 -8.75109 -8.67544 -8.35856 -7.75167 -6.59382 -4.40373 -0.27530 2.21508 3.21450 3.32640 3.33656 3.45120 3.48950 3.49645 3.67621 4.09497 4.27063 4.27860 4.35712 4.43233 4.47276 4.59415 5.02017 5.07923 5.17564 5.27327 5.35380 5.40365 5.50468 5.55756 5.59468 5.69056 5.75996 6.00455 6.05609 6.24678 6.28590 6.67283 6.79111 6.83547 6.90538 6.94602 7.07852 7.29300 7.65794 7.88032 8.23140 8.56355 8.76391 9.20624 9.39619 10.77655 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003192 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.462986 B = 8770.703016 C = 9582.293954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.245 3.755 4 H 0.053 0.947 5 C -0.609 4.609 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.891 5.891 9 Si 1.072 2.928 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.287 1.287 13 N -0.705 5.705 14 C 0.498 3.502 15 O -0.541 6.541 16 C 0.027 3.973 17 N -0.496 5.496 18 C 0.005 3.995 19 C 0.087 3.913 20 H 0.107 0.893 21 C -0.111 4.111 22 C -0.589 4.589 23 S 2.392 3.608 24 O -0.938 6.938 25 O -0.941 6.941 26 C -0.636 4.636 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.277 0.723 33 H 0.385 0.615 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 2.493 -11.467 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.145 3.855 4 H 0.071 0.929 5 C -0.647 4.647 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.524 5.524 9 Si 0.900 3.100 10 H -0.213 1.213 11 H -0.210 1.210 12 H -0.214 1.214 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.420 6.420 16 C -0.104 4.104 17 N -0.219 5.219 18 C -0.143 4.143 19 C -0.024 4.024 20 H 0.125 0.875 21 C -0.150 4.150 22 C -0.720 4.720 23 S 2.575 3.425 24 O -0.935 6.935 25 O -0.938 6.938 26 C -0.767 4.767 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.218 0.782 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.138 3.519 -10.713 15.850 hybrid contribution -0.526 -0.641 -0.798 1.151 sum -11.664 2.878 -11.511 16.638 Atomic orbital electron populations 1.21843 0.96897 0.98564 1.02436 1.21823 0.94303 0.99142 1.00371 1.18919 0.94797 0.88564 0.83176 0.92943 1.22199 0.91202 1.04902 1.46412 0.92549 1.25989 1.06629 0.92232 0.92893 1.70688 1.11865 1.27580 1.42304 0.83503 0.73963 0.75433 0.77081 1.21262 1.21010 1.21362 1.47650 1.13592 1.55761 1.18522 1.20313 0.83149 0.79736 0.88612 1.90602 1.50711 1.59637 1.41092 1.22194 0.89550 0.99916 0.98785 1.61756 1.21893 1.33289 1.04915 1.22796 1.01202 0.92037 0.98218 1.22589 0.92499 0.93699 0.93648 0.87492 1.22000 0.95299 1.02119 0.95557 1.30478 1.20402 1.12429 1.08653 1.08949 0.80140 0.76166 0.77278 1.93623 1.82422 1.80049 1.37425 1.93615 1.85667 1.27374 1.87119 1.31396 1.14568 1.11764 1.19020 0.95441 0.93017 0.92801 0.93776 0.92467 0.91117 0.78232 0.92041 0.88541 0.95435 0.91206 0.88064 0.88040 0.89029 0.84405 0.84296 0.83736 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.53 37.16 0.32 -2.42 16 2 C -0.12 -2.46 5.58 -26.73 -0.15 -2.61 16 3 C 0.25 5.76 1.72 -69.08 -0.12 5.64 16 4 H 0.05 1.43 6.57 -51.93 -0.34 1.09 16 5 C -0.61 -15.51 8.49 -34.44 -0.29 -15.81 16 6 H 0.06 1.43 7.82 -52.48 -0.41 1.02 16 7 C 0.03 0.82 5.45 -17.82 -0.10 0.73 16 8 N -0.89 -25.19 13.56 55.43 0.75 -24.44 16 9 Si 1.07 23.37 29.91 -169.99 -5.08 18.29 16 10 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.24 4.98 -54.93 -0.27 -14.51 16 14 C 0.50 9.35 6.16 -10.99 -0.07 9.28 16 15 O -0.54 -11.70 11.45 5.55 0.06 -11.63 16 16 C 0.03 0.37 5.09 -4.97 -0.03 0.35 16 17 N -0.50 -6.23 4.50 -234.48 -1.06 -7.29 16 18 C 0.00 0.06 8.46 60.06 0.51 0.57 16 19 C 0.09 0.77 2.65 -66.18 -0.18 0.59 16 20 H 0.11 0.81 8.03 -51.93 -0.42 0.39 16 21 C -0.11 -0.77 5.81 -25.67 -0.15 -0.92 16 22 C -0.59 -3.27 7.26 37.77 0.27 -3.00 16 23 S 2.39 20.16 6.11 -107.50 -0.66 19.51 16 24 O -0.94 -11.05 18.15 -57.71 -1.05 -12.09 16 25 O -0.94 -11.42 18.15 -57.71 -1.05 -12.46 16 26 C -0.64 -5.22 5.78 38.24 0.22 -5.00 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 29 H 0.05 1.07 5.63 -51.93 -0.29 0.78 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.28 7.97 6.93 -40.82 -0.28 7.69 16 33 H 0.38 7.16 8.59 -40.82 -0.35 6.81 16 34 H 0.06 0.81 7.58 -51.93 -0.39 0.41 16 35 H 0.10 1.13 8.00 -51.93 -0.42 0.71 16 36 H 0.03 0.33 6.19 -51.93 -0.32 0.01 16 37 H 0.07 0.73 5.94 -51.93 -0.31 0.43 16 38 H 0.10 1.70 5.88 -51.93 -0.31 1.39 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.62 5.86 -51.93 -0.30 0.32 16 41 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.14 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.14 1.20 5.85 -51.93 -0.30 0.89 16 44 H 0.14 1.05 8.01 -51.93 -0.42 0.63 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -34.53 352.69 -9.39 -43.92 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.60 Total: 7.99 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 0.25 Total: -12.60 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.58 Total: -46.24 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -2.03 Total: -36.19 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.08 Total: 18.29 kcal Atomic # 16 Polarization: 20.16 SS G_CDS: -0.66 Total: 19.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.53 -9.39 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330869674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.180 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds