Wall clock time and date at job start Tue Mar 31 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09000 * 109.55351 * 305.21394 * 3 2 1 5 5 C 1.53180 * 109.56015 * 185.00186 * 3 2 1 6 6 N 1.46379 * 109.51191 * 181.79618 * 5 3 2 7 7 C 1.34784 * 119.69835 * 244.27292 * 6 5 3 8 8 O 1.21585 * 119.99600 * 185.27457 * 7 6 5 9 9 N 1.34774 * 120.00121 * 5.27469 * 7 6 5 10 10 C 1.46498 * 120.00139 * 175.01004 * 9 7 6 11 11 C 1.53002 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46958 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99948 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99924 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99899 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47208 * 90.00096 * 16 14 12 18 18 H 1.48506 * 109.46807 * 209.99740 * 16 14 12 19 19 H 1.48490 * 109.47180 * 329.99547 * 16 14 12 20 20 C 1.46379 * 120.60263 * 64.55248 * 6 5 3 21 21 C 1.53661 * 109.25124 * 295.44155 * 20 6 5 22 22 H 1.08999 * 109.66490 * 298.54893 * 21 20 6 23 23 C 1.52997 * 109.58628 * 178.25051 * 21 20 6 24 24 S 1.81662 * 109.64600 * 65.48028 * 3 2 1 25 25 O 1.42100 * 108.65226 * 289.80816 * 24 3 2 26 26 O 1.42101 * 108.65316 * 61.02381 * 24 3 2 27 27 H 1.09000 * 109.47291 * 59.99794 * 1 2 3 28 28 H 1.08995 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46786 * 299.99804 * 1 2 3 30 30 H 1.08995 * 109.47088 * 240.00102 * 2 1 3 31 31 H 1.09000 * 109.47291 * 120.00206 * 2 1 3 32 32 H 1.09008 * 109.46312 * 61.78354 * 5 3 2 33 33 H 1.09001 * 109.45609 * 301.80854 * 5 3 2 34 34 H 0.97003 * 119.99857 * 355.01478 * 9 7 6 35 35 H 1.09003 * 109.46414 * 60.00355 * 10 9 7 36 36 H 1.08994 * 109.47417 * 300.00709 * 10 9 7 37 37 H 1.08999 * 109.47024 * 300.00412 * 11 10 9 38 38 H 1.08996 * 109.47116 * 60.00455 * 11 10 9 39 39 H 0.97001 * 119.99981 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46592 * 55.46082 * 20 6 5 41 41 H 1.09007 * 109.46811 * 175.43760 * 20 6 5 42 42 H 1.09005 * 109.46620 * 300.57788 * 23 21 20 43 43 H 1.09003 * 109.47068 * 60.57288 * 23 21 20 44 44 H 1.08996 * 109.47191 * 180.58072 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9839 -0.8392 5 6 3.5666 1.4468 -0.1258 6 7 4.0570 2.8253 -0.0827 7 6 4.6710 3.3497 -1.1618 8 8 5.1651 4.4590 -1.1008 9 7 4.7373 2.6446 -2.3085 10 6 5.3067 3.2554 -3.5122 11 6 5.2626 2.2495 -4.6642 12 6 5.8489 2.8776 -5.9022 13 1 6.2160 3.8928 -5.8706 14 6 5.9159 2.1566 -7.0755 15 7 5.4684 0.9205 -7.1141 16 14 6.6420 2.9354 -8.6103 17 1 8.1027 2.6715 -8.6556 18 1 5.9962 2.3528 -9.8139 19 1 6.4045 4.4009 -8.5814 20 6 3.8919 3.6375 1.1239 21 6 2.3941 3.8665 1.3795 22 1 1.9574 4.4078 0.5402 23 6 2.2112 4.6782 2.6635 24 16 1.5742 2.2550 1.5566 25 8 0.1678 2.4586 1.5599 26 8 2.1774 1.5523 2.6343 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8543 0.9883 -1.0721 33 1 4.0005 0.8809 0.6986 34 1 4.4078 1.7327 -2.3368 35 1 6.3405 3.5425 -3.3195 36 1 4.7280 4.1394 -3.7797 37 1 5.8411 1.3653 -4.3969 38 1 4.2288 1.9628 -4.8567 39 1 5.5159 0.4131 -7.9395 40 1 4.3327 3.1179 1.9746 41 1 4.3902 4.5973 0.9867 42 1 2.6518 4.1373 3.5010 43 1 2.7036 5.6446 2.5557 44 1 1.1479 4.8307 2.8485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345950435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:16 Heat of formation + Delta-G solvation = -103.604894 kcal Electronic energy + Delta-G solvation = -25852.025440 eV Core-core repulsion = 22124.798020 eV Total energy + Delta-G solvation = -3727.227420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43072 -37.52328 -37.04330 -36.38750 -35.82213 -34.87714 -33.48431 -32.72893 -29.75507 -29.54921 -26.96356 -24.79270 -24.07143 -23.06495 -21.95681 -21.15600 -19.97973 -19.12681 -18.28393 -17.49074 -16.87273 -16.47618 -16.25865 -16.14532 -15.42022 -14.67543 -14.65098 -14.56471 -14.36485 -14.05704 -13.83785 -13.59220 -13.29708 -13.11990 -12.79779 -12.67047 -12.47549 -12.47359 -12.31405 -12.24997 -12.03464 -11.83293 -11.68462 -11.45699 -11.23453 -11.09162 -10.84744 -10.68710 -10.42484 -10.28622 -10.03352 -9.65030 -9.34500 -9.16272 -8.59219 -8.40616 -6.15230 -4.18178 -0.34083 2.35110 2.45663 3.17555 3.25849 3.27506 3.32318 3.36249 3.67843 3.82619 3.93442 4.16841 4.26776 4.38346 4.45125 4.54307 4.66245 4.80281 4.97238 5.04021 5.12617 5.19117 5.22249 5.28044 5.35593 5.42125 5.51731 5.61501 5.64503 5.69990 5.97608 6.04891 6.21434 6.28036 6.65452 6.77109 6.81255 7.45561 7.53488 7.83037 8.04604 8.22514 8.68518 8.87793 9.47079 10.96369 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003138 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.643035 B = 8920.499809 C = 9859.339297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.106 4.106 3 C -0.585 4.585 4 H 0.144 0.856 5 C 0.123 3.877 6 N -0.647 5.647 7 C 0.704 3.296 8 O -0.584 6.584 9 N -0.735 5.735 10 C 0.137 3.863 11 C 0.013 3.987 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.142 3.858 21 C -0.586 4.586 22 H 0.142 0.858 23 C -0.139 4.139 24 S 2.417 3.583 25 O -0.935 6.935 26 O -0.932 6.932 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.394 0.606 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 -0.434 19.071 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.145 4.145 3 C -0.696 4.696 4 H 0.162 0.838 5 C -0.002 4.002 6 N -0.385 5.385 7 C 0.405 3.595 8 O -0.462 6.462 9 N -0.391 5.391 10 C 0.014 3.986 11 C -0.024 4.024 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.017 3.983 21 C -0.697 4.697 22 H 0.160 0.840 23 C -0.197 4.197 24 S 2.599 3.401 25 O -0.932 6.932 26 O -0.929 6.929 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.854 -0.062 19.627 21.532 hybrid contribution 0.525 0.181 -1.794 1.878 sum -8.329 0.119 17.833 19.683 Atomic orbital electron populations 1.22178 0.94293 1.03498 1.03985 1.21322 0.96941 0.91012 1.05220 1.30572 1.05777 1.10205 1.23053 0.83756 1.21378 0.88780 0.83780 1.06217 1.47338 1.63238 1.13479 1.14488 1.15966 0.79093 0.84341 0.80104 1.90900 1.52033 1.19985 1.83272 1.45805 1.66059 1.17291 1.09941 1.21684 0.97241 0.97474 0.82187 1.19328 0.97887 0.94014 0.91218 1.21025 1.40810 0.99873 0.94375 0.92190 1.24990 0.95287 0.94854 0.99091 1.69948 1.46396 1.09318 1.27609 0.86502 0.79231 0.79577 0.82194 1.20526 1.21158 1.19709 1.21265 0.90835 0.99582 0.86619 1.30543 1.09466 1.21373 1.08288 0.84045 1.21557 1.03695 1.01335 0.93128 1.08442 0.76055 0.78002 0.77624 1.93570 1.27753 1.85236 1.86647 1.93565 1.78765 1.70940 1.49624 0.91385 0.91088 0.91091 0.88742 0.89958 0.87489 0.88536 0.77000 0.92415 0.92620 0.95935 0.95987 0.92805 0.89163 0.86121 0.90533 0.89475 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.58 37.16 0.36 -1.20 16 2 C -0.11 -0.83 5.41 -26.73 -0.14 -0.98 16 3 C -0.59 -5.05 2.65 -26.64 -0.07 -5.13 16 4 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.12 5.45 -4.01 -0.02 1.10 16 6 N -0.65 -7.56 2.79 -179.09 -0.50 -8.06 16 7 C 0.70 11.29 8.26 -86.91 -0.72 10.57 16 8 O -0.58 -11.49 15.66 5.29 0.08 -11.40 16 9 N -0.74 -12.06 5.46 -65.23 -0.36 -12.41 16 10 C 0.14 2.78 5.62 -4.04 -0.02 2.75 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.14 1.42 5.53 -3.76 -0.02 1.40 16 21 C -0.59 -5.16 3.22 -26.39 -0.09 -5.24 16 22 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.14 -1.01 9.22 37.16 0.34 -0.67 16 24 S 2.42 24.04 3.70 -107.50 -0.40 23.64 16 25 O -0.94 -11.57 15.85 -57.82 -0.92 -12.49 16 26 O -0.93 -11.04 18.02 -57.82 -1.04 -12.08 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.70 5.67 -51.92 -0.29 0.40 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.92 5.47 -51.92 -0.28 0.63 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 5.47 5.85 -40.82 -0.24 5.23 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.12 1.35 6.88 -51.93 -0.36 0.99 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -34.41 362.25 -9.95 -44.36 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.06 Total: 1.86 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.94 Total: -10.07 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.12 Total: -45.20 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.88 Total: -35.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 24.04 SS G_CDS: -0.40 Total: 23.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.41 -9.95 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345950435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.244 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds