Wall clock time and date at job start Tue Mar 31 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47307 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99808 * 275.00295 * 5 4 3 7 7 C 1.50703 * 109.46865 * 274.99576 * 6 5 4 8 8 N 1.34777 * 119.99960 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00178 * 0.02562 * 7 6 5 10 10 S 1.65597 * 119.99891 * 95.00053 * 5 4 3 11 11 O 1.42105 * 104.27669 * 333.92759 * 10 5 4 12 12 O 1.42102 * 104.27714 * 206.07307 * 10 5 4 13 13 C 1.81401 * 104.45029 * 89.99999 * 10 5 4 14 14 C 1.52995 * 109.46912 * 186.41841 * 13 10 5 15 15 C 1.50692 * 115.55400 * 294.33016 * 14 13 10 16 16 H 1.08000 * 120.00251 * 91.84980 * 15 14 13 17 17 C 1.37881 * 120.00072 * 271.85223 * 15 14 13 18 18 N 1.31512 * 120.00112 * 183.19818 * 17 15 14 19 19 Si 1.86801 * 120.00140 * 3.19109 * 17 15 14 20 20 H 1.48497 * 109.47349 * 265.88909 * 19 17 15 21 21 H 1.48502 * 109.46958 * 25.88531 * 19 17 15 22 22 H 1.48498 * 109.47513 * 145.88398 * 19 17 15 23 23 C 1.53007 * 117.49877 * 80.00596 * 14 13 10 24 24 C 1.53002 * 117.49571 * 148.66077 * 14 13 10 25 25 H 1.09004 * 109.46566 * 60.00407 * 1 2 3 26 26 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47625 * 300.00380 * 1 2 3 28 28 H 1.08997 * 109.47625 * 239.99619 * 2 1 3 29 29 H 1.09004 * 109.46566 * 119.99593 * 2 1 3 30 30 H 1.09010 * 109.47158 * 59.99646 * 3 2 1 31 31 H 1.08995 * 109.46979 * 299.99510 * 3 2 1 32 32 H 1.08997 * 109.47112 * 59.99844 * 4 3 2 33 33 H 1.09004 * 109.46933 * 299.99907 * 4 3 2 34 34 H 1.09006 * 109.47348 * 34.99815 * 6 5 4 35 35 H 1.08997 * 109.47099 * 154.99856 * 6 5 4 36 36 H 0.97003 * 119.99648 * 0.02562 * 8 7 6 37 37 H 0.97001 * 120.00203 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46494 * 66.42071 * 13 10 5 39 39 H 1.09000 * 109.46806 * 306.41996 * 13 10 5 40 40 H 0.97001 * 120.00184 * 179.97438 * 18 17 15 41 41 H 1.08996 * 117.49365 * 215.00429 * 23 14 13 42 42 H 1.08998 * 117.49588 * 0.02562 * 23 14 13 43 43 H 1.09003 * 117.49909 * 359.97438 * 24 14 13 44 44 H 1.09002 * 117.50270 * 144.97123 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.1987 3.5505 -1.2642 7 6 5.5356 3.2302 -1.8819 8 7 5.8857 3.7884 -3.0576 9 8 6.2959 2.4695 -1.3214 10 16 4.4516 3.5636 1.4284 11 8 3.6598 2.8935 2.3997 12 8 4.2729 4.9488 1.1665 13 6 6.2090 3.1824 1.6668 14 6 6.6568 3.6802 3.0425 15 6 6.6338 5.1750 3.2320 16 1 5.7538 5.6549 3.6341 17 6 7.7363 5.9300 2.8920 18 7 7.7401 7.2260 3.1156 19 14 9.2246 5.1122 2.1138 20 1 10.2074 4.7640 3.1711 21 1 8.7982 3.8770 1.4083 22 1 9.8513 6.0452 1.1433 23 6 6.3174 2.8092 4.2538 24 6 7.7612 2.8949 3.7528 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 3.4025 3.2511 -1.9458 35 1 4.1326 4.6221 -1.0766 36 1 5.2774 4.3965 -3.5060 37 1 6.7460 3.5820 -3.4554 38 1 6.7962 3.6766 0.8927 39 1 6.3587 2.1045 1.6040 40 1 8.5158 7.7571 2.8768 41 1 6.0774 3.3175 5.1877 42 1 5.7755 1.8814 4.0705 43 1 8.1685 2.0234 3.2402 44 1 8.4715 3.4595 4.3568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346441711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:09 Heat of formation + Delta-G solvation = -92.032531 kcal Electronic energy + Delta-G solvation = -26650.825882 eV Core-core repulsion = 22924.100277 eV Total energy + Delta-G solvation = -3726.725604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.55668 -37.06695 -36.90001 -36.29686 -35.15193 -34.14271 -33.70914 -32.11953 -29.53906 -28.38028 -26.81193 -25.44810 -23.26768 -21.65368 -21.26705 -20.84400 -19.34567 -18.42852 -17.54232 -17.19297 -16.93169 -16.47095 -15.86717 -15.25174 -15.16481 -14.94306 -14.74354 -14.20048 -14.17125 -13.81990 -13.63271 -13.13060 -12.90816 -12.62845 -12.59076 -12.28466 -12.11852 -11.79699 -11.52701 -11.36951 -11.25917 -11.18973 -11.04115 -10.93208 -10.88457 -10.57862 -10.51393 -10.35850 -10.26597 -9.98995 -9.74678 -9.64610 -9.09095 -8.93412 -8.61920 -8.35295 -6.13082 -4.20355 0.93887 2.58654 3.05872 3.27386 3.36881 3.46286 3.56301 4.40992 4.48240 4.66513 4.69081 4.85481 4.88161 4.92784 4.98586 5.06817 5.12466 5.22747 5.31397 5.46011 5.58178 5.61060 5.66318 5.72355 5.81803 5.88504 5.95280 6.05732 6.08780 6.12888 6.27286 6.34860 6.37535 6.49944 6.62026 6.70359 6.76196 6.97961 7.12512 7.24037 7.65221 8.20137 8.41076 8.91110 9.48876 10.98115 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.005456 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.348613 B = 5130.465967 C = 6031.216450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.129 3.871 5 N -0.991 5.991 6 C 0.095 3.905 7 C 0.490 3.510 8 N -0.856 5.856 9 O -0.529 6.529 10 S 2.610 3.390 11 O -0.960 6.960 12 O -0.943 6.943 13 C -0.560 4.560 14 C -0.001 4.001 15 C -0.507 4.507 16 H 0.086 0.914 17 C 0.090 3.910 18 N -0.885 5.885 19 Si 0.869 3.131 20 H -0.276 1.276 21 H -0.251 1.251 22 H -0.292 1.292 23 C -0.177 4.177 24 C -0.184 4.184 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.402 0.598 37 H 0.401 0.599 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.266 0.734 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 -11.656 -13.595 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.004 3.996 5 N -0.824 5.824 6 C -0.035 4.035 7 C 0.273 3.727 8 N -0.421 5.421 9 O -0.404 6.404 10 S 2.707 3.293 11 O -0.951 6.951 12 O -0.933 6.933 13 C -0.692 4.692 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.104 0.896 17 C -0.115 4.115 18 N -0.520 5.520 19 Si 0.696 3.304 20 H -0.202 1.202 21 H -0.175 1.175 22 H -0.218 1.218 23 C -0.215 4.215 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.230 0.770 37 H 0.231 0.769 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.087 -11.493 -12.577 19.309 hybrid contribution 1.744 -0.387 -1.252 2.182 sum -7.343 -11.880 -13.830 19.655 Atomic orbital electron populations 1.21762 0.95860 1.01363 1.01917 1.21454 0.95928 0.96579 1.02091 1.22092 0.95685 0.97194 1.03111 1.21224 0.93694 0.81507 1.03209 1.57734 1.79935 1.23664 1.21019 1.21186 0.94613 1.00107 0.87602 1.21575 0.89920 0.80152 0.81042 1.43854 1.23237 1.50772 1.24253 1.90768 1.53048 1.35240 1.61313 1.05242 0.77922 0.73957 0.72193 1.93507 1.66956 1.76054 1.58541 1.93549 1.85814 1.30805 1.83153 1.30190 1.23128 1.08432 1.07445 1.18927 1.00982 0.94679 0.85779 1.20345 1.03060 0.86329 1.44694 0.89600 1.24924 0.98154 0.94456 0.93957 1.69897 1.30388 1.05596 1.46144 0.86981 0.83164 0.80307 0.79968 1.20172 1.17512 1.21824 1.23022 0.97685 1.00957 0.99812 1.22970 0.92187 1.01918 1.05235 0.92933 0.92936 0.92495 0.92160 0.91597 0.90555 0.91857 0.90846 0.89999 0.87267 0.85494 0.77012 0.76856 0.85578 0.87455 0.92384 0.88689 0.90031 0.90620 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.14 -1.60 5.54 -26.73 -0.15 -1.75 16 4 C 0.13 1.65 5.24 -4.04 -0.02 1.62 16 5 N -0.99 -15.02 2.21 -115.66 -0.26 -15.28 16 6 C 0.10 1.15 6.14 -5.19 -0.03 1.12 16 7 C 0.49 6.38 8.17 -10.98 -0.09 6.29 16 8 N -0.86 -7.39 8.87 31.22 0.28 -7.11 16 9 O -0.53 -9.03 16.11 5.56 0.09 -8.94 16 10 S 2.61 53.47 5.11 -107.50 -0.55 52.92 16 11 O -0.96 -20.64 16.75 -57.54 -0.96 -21.60 16 12 O -0.94 -22.28 16.23 -57.54 -0.93 -23.21 16 13 C -0.56 -12.16 5.01 37.16 0.19 -11.97 16 14 C 0.00 -0.02 0.77 -155.66 -0.12 -0.14 16 15 C -0.51 -14.60 8.82 -34.44 -0.30 -14.91 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 17 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 18 N -0.88 -27.24 13.96 55.43 0.77 -26.46 16 19 Si 0.87 21.97 24.91 -169.99 -4.23 17.74 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.25 -6.11 5.70 56.52 0.32 -5.79 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 C -0.18 -3.84 9.96 -26.69 -0.27 -4.10 16 24 C -0.18 -4.06 7.56 -26.69 -0.20 -4.26 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.03 7.90 -51.92 -0.41 0.62 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 33 H 0.08 1.08 7.61 -51.93 -0.40 0.69 16 34 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.13 1.58 6.82 -51.93 -0.35 1.23 16 36 H 0.40 2.05 8.83 -40.82 -0.36 1.69 16 37 H 0.40 3.18 8.93 -40.82 -0.36 2.81 16 38 H 0.13 2.87 6.22 -51.92 -0.32 2.54 16 39 H 0.11 2.05 8.09 -51.92 -0.42 1.63 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 2.07 7.25 -51.93 -0.38 1.70 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -37.20 370.08 -8.39 -45.59 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.29 Total: 8.57 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -0.88 Total: -27.80 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.80 Total: -48.85 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.81 Total: -53.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.23 Total: 17.74 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.55 Total: 52.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.20 -8.39 -45.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.440 kcal (2) G-P(sol) polarization free energy of solvation -37.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds