Wall clock time and date at job start Tue Mar 31 2020 04:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47307 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99808 * 275.00295 * 5 4 3 7 7 C 1.50703 * 109.46865 * 274.99576 * 6 5 4 8 8 N 1.34777 * 119.99960 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00178 * 0.02562 * 7 6 5 10 10 S 1.65597 * 119.99891 * 95.00053 * 5 4 3 11 11 O 1.42105 * 104.27669 * 333.92759 * 10 5 4 12 12 O 1.42102 * 104.27714 * 206.07307 * 10 5 4 13 13 C 1.81401 * 104.45029 * 89.99999 * 10 5 4 14 14 C 1.52995 * 109.46912 * 186.41841 * 13 10 5 15 15 C 1.50692 * 115.55400 * 294.33016 * 14 13 10 16 16 H 1.08000 * 120.00251 * 91.84980 * 15 14 13 17 17 C 1.37881 * 120.00072 * 271.85223 * 15 14 13 18 18 N 1.31512 * 120.00112 * 183.19818 * 17 15 14 19 19 Si 1.86801 * 120.00140 * 3.19109 * 17 15 14 20 20 H 1.48497 * 109.47349 * 265.88909 * 19 17 15 21 21 H 1.48502 * 109.46958 * 25.88531 * 19 17 15 22 22 H 1.48498 * 109.47513 * 145.88398 * 19 17 15 23 23 C 1.53007 * 117.49877 * 80.00596 * 14 13 10 24 24 C 1.53002 * 117.49571 * 148.66077 * 14 13 10 25 25 H 1.09004 * 109.46566 * 60.00407 * 1 2 3 26 26 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47625 * 300.00380 * 1 2 3 28 28 H 1.08997 * 109.47625 * 239.99619 * 2 1 3 29 29 H 1.09004 * 109.46566 * 119.99593 * 2 1 3 30 30 H 1.09010 * 109.47158 * 59.99646 * 3 2 1 31 31 H 1.08995 * 109.46979 * 299.99510 * 3 2 1 32 32 H 1.08997 * 109.47112 * 59.99844 * 4 3 2 33 33 H 1.09004 * 109.46933 * 299.99907 * 4 3 2 34 34 H 1.09006 * 109.47348 * 34.99815 * 6 5 4 35 35 H 1.08997 * 109.47099 * 154.99856 * 6 5 4 36 36 H 0.97003 * 119.99648 * 0.02562 * 8 7 6 37 37 H 0.97001 * 120.00203 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46494 * 66.42071 * 13 10 5 39 39 H 1.09000 * 109.46806 * 306.41996 * 13 10 5 40 40 H 0.97001 * 120.00184 * 179.97438 * 18 17 15 41 41 H 1.08996 * 117.49365 * 215.00429 * 23 14 13 42 42 H 1.08998 * 117.49588 * 0.02562 * 23 14 13 43 43 H 1.09003 * 117.49909 * 359.97438 * 24 14 13 44 44 H 1.09002 * 117.50270 * 144.97123 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.1987 3.5505 -1.2642 7 6 5.5356 3.2302 -1.8819 8 7 5.8857 3.7884 -3.0576 9 8 6.2959 2.4695 -1.3214 10 16 4.4516 3.5636 1.4284 11 8 3.6598 2.8935 2.3997 12 8 4.2729 4.9488 1.1665 13 6 6.2090 3.1824 1.6668 14 6 6.6568 3.6802 3.0425 15 6 6.6338 5.1750 3.2320 16 1 5.7538 5.6549 3.6341 17 6 7.7363 5.9300 2.8920 18 7 7.7401 7.2260 3.1156 19 14 9.2246 5.1122 2.1138 20 1 10.2074 4.7640 3.1711 21 1 8.7982 3.8770 1.4083 22 1 9.8513 6.0452 1.1433 23 6 6.3174 2.8092 4.2538 24 6 7.7612 2.8949 3.7528 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 3.4025 3.2511 -1.9458 35 1 4.1326 4.6221 -1.0766 36 1 5.2774 4.3965 -3.5060 37 1 6.7460 3.5820 -3.4554 38 1 6.7962 3.6766 0.8927 39 1 6.3587 2.1045 1.6040 40 1 8.5158 7.7571 2.8768 41 1 6.0774 3.3175 5.1877 42 1 5.7755 1.8814 4.0705 43 1 8.1685 2.0234 3.2402 44 1 8.4715 3.4595 4.3568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346441711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:08 Heat of formation + Delta-G solvation = -122.287201 kcal Electronic energy + Delta-G solvation = -26652.137823 eV Core-core repulsion = 22924.100277 eV Total energy + Delta-G solvation = -3728.037545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55865 -38.88793 -38.20286 -37.70624 -36.82270 -35.04838 -34.59497 -34.33212 -30.41511 -30.09018 -27.89858 -27.51081 -24.20680 -23.39850 -22.14245 -21.81741 -21.17385 -19.84896 -18.89615 -18.61702 -18.15687 -17.81813 -17.19244 -16.88660 -16.73151 -16.16089 -15.89003 -15.61590 -15.43123 -15.15257 -14.87654 -14.63522 -14.48459 -14.07195 -13.93606 -13.46646 -13.41597 -13.25920 -13.02579 -12.94806 -12.75161 -12.67342 -12.46103 -12.33597 -12.10172 -12.01472 -11.85317 -11.78569 -11.69545 -11.34185 -11.30873 -11.02318 -10.76391 -10.59324 -10.36368 -9.89031 -8.36578 -6.48430 -0.62967 1.28095 1.31845 1.46876 1.61870 1.75853 2.30578 2.63638 2.89394 2.95058 3.10662 3.27151 3.56951 3.87770 3.96154 4.08813 4.13394 4.16933 4.29739 4.31267 4.34593 4.38306 4.44205 4.60954 4.69009 4.72960 4.79740 4.83025 4.98605 5.00681 5.08671 5.14903 5.18185 5.34223 5.39891 5.46588 5.51459 5.58358 5.60311 5.94464 6.16258 6.49211 6.61843 7.23958 7.36807 8.79337 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.005456 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.348613 B = 5130.465967 C = 6031.216450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.122 3.878 5 N -0.982 5.982 6 C 0.086 3.914 7 C 0.486 3.514 8 N -0.835 5.835 9 O -0.573 6.573 10 S 2.620 3.380 11 O -0.978 6.978 12 O -0.986 6.986 13 C -0.560 4.560 14 C -0.035 4.035 15 C -0.510 4.510 16 H 0.035 0.965 17 C 0.034 3.966 18 N -0.936 5.936 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.232 1.232 22 H -0.290 1.290 23 C -0.169 4.169 24 C -0.173 4.173 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.420 0.580 37 H 0.408 0.592 38 H 0.115 0.885 39 H 0.136 0.864 40 H 0.270 0.730 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -14.489 -16.069 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.179 4.179 4 C -0.002 4.002 5 N -0.818 5.818 6 C -0.043 4.043 7 C 0.269 3.731 8 N -0.401 5.401 9 O -0.452 6.452 10 S 2.717 3.283 11 O -0.968 6.968 12 O -0.976 6.976 13 C -0.692 4.692 14 C -0.037 4.037 15 C -0.547 4.547 16 H 0.053 0.947 17 C -0.165 4.165 18 N -0.574 5.574 19 Si 0.750 3.250 20 H -0.186 1.186 21 H -0.155 1.155 22 H -0.217 1.217 23 C -0.206 4.206 24 C -0.211 4.211 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.252 0.748 37 H 0.239 0.761 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.901 -14.311 -15.073 22.611 hybrid contribution 1.545 0.520 -0.523 1.712 sum -7.356 -13.792 -15.596 22.081 Atomic orbital electron populations 1.21769 0.95291 1.02109 1.01796 1.21457 0.96419 0.95246 1.02747 1.22085 0.94608 0.98508 1.02703 1.21511 0.94602 0.79964 1.04131 1.57291 1.79304 1.24739 1.20449 1.21554 0.96185 0.99568 0.86997 1.21683 0.89744 0.79896 0.81780 1.43682 1.23749 1.49770 1.22863 1.90744 1.54163 1.37550 1.62785 1.04598 0.77412 0.73195 0.73139 1.93472 1.67007 1.76062 1.60263 1.93493 1.86192 1.33750 1.84202 1.30100 1.24011 1.09946 1.05108 1.18868 1.04308 0.92410 0.88152 1.20429 1.01221 0.89250 1.43805 0.94707 1.25779 1.01392 0.94854 0.94517 1.70036 1.31717 1.07413 1.48245 0.86046 0.79447 0.79961 0.79522 1.18596 1.15511 1.21703 1.23101 0.98089 1.01165 0.98232 1.23052 0.91842 1.02028 1.04194 0.92011 0.91782 0.93715 0.90191 0.92270 0.93403 0.89879 0.88218 0.90766 0.82235 0.86199 0.74848 0.76091 0.86665 0.84576 0.92132 0.89533 0.87226 0.87373 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -1.95 5.93 30.60 0.18 -1.77 16 3 C -0.14 -2.85 5.54 30.59 0.17 -2.68 16 4 C 0.12 2.82 5.24 86.38 0.45 3.27 16 5 N -0.98 -28.17 2.21 -519.84 -1.15 -29.31 16 6 C 0.09 1.88 6.14 85.63 0.53 2.40 16 7 C 0.49 11.45 8.17 87.66 0.72 12.17 16 8 N -0.84 -12.02 8.87 -173.53 -1.54 -13.56 16 9 O -0.57 -18.34 16.11 -3.04 -0.05 -18.39 16 10 S 2.62 107.56 5.11 -56.49 -0.29 107.28 16 11 O -0.98 -42.27 16.75 -127.65 -2.14 -44.41 16 12 O -0.99 -48.20 16.23 -127.65 -2.07 -50.27 16 13 C -0.56 -23.74 5.01 71.98 0.36 -23.38 16 14 C -0.03 -1.68 0.77 -52.93 -0.04 -1.72 16 15 C -0.51 -30.41 8.82 25.60 0.23 -30.19 16 16 H 0.03 2.35 8.06 -2.91 -0.02 2.33 16 17 C 0.03 2.05 5.47 84.66 0.46 2.51 16 18 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 19 Si 0.93 45.18 24.91 68.60 1.71 46.89 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.23 -10.54 5.70 99.48 0.57 -9.98 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 C -0.17 -7.11 9.96 30.62 0.30 -6.80 16 24 C -0.17 -7.22 7.56 30.62 0.23 -6.99 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.25 7.90 -2.38 -0.02 1.23 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 33 H 0.07 1.82 7.61 -2.39 -0.02 1.81 16 34 H 0.16 1.82 8.11 -2.38 -0.02 1.80 16 35 H 0.12 2.85 6.82 -2.39 -0.02 2.84 16 36 H 0.42 2.95 8.83 -92.71 -0.82 2.13 16 37 H 0.41 5.33 8.93 -92.71 -0.83 4.51 16 38 H 0.12 5.13 6.22 -2.39 -0.01 5.12 16 39 H 0.14 4.85 8.09 -2.39 -0.02 4.84 16 40 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 41 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.96 16 43 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 44 H 0.08 3.60 7.25 -2.39 -0.02 3.58 16 Total: -1.00 -84.72 370.08 -1.70 -86.42 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.78 Total: 29.73 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 4.30 Total: -54.72 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -2.39 Total: -102.52 kcal Atomic # 8 Polarization: -108.81 SS G_CDS: -4.26 Total: -113.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.71 Total: 46.89 kcal Atomic # 16 Polarization: 107.56 SS G_CDS: -0.29 Total: 107.28 kcal Total: -84.72 -1.70 -86.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.869 kcal (2) G-P(sol) polarization free energy of solvation -84.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds