Wall clock time and date at job start Tue Mar 31 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 C 1.52996 * 109.47120 * 120.00341 * 2 1 3 5 5 N 1.46496 * 109.47389 * 56.44800 * 4 2 1 6 6 C 1.46507 * 119.99878 * 272.72581 * 5 4 2 7 7 C 1.50695 * 109.46945 * 274.62708 * 6 5 4 8 8 N 1.34785 * 119.99930 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00552 * 0.02562 * 7 6 5 10 10 S 1.65595 * 120.00055 * 92.72670 * 5 4 2 11 11 O 1.42092 * 104.28064 * 333.92937 * 10 5 4 12 12 O 1.42104 * 104.27871 * 206.07039 * 10 5 4 13 13 C 1.81399 * 104.45091 * 90.00311 * 10 5 4 14 14 C 1.53004 * 109.47233 * 186.20393 * 13 10 5 15 15 C 1.50697 * 115.54901 * 294.32298 * 14 13 10 16 16 H 1.08003 * 119.99818 * 91.57266 * 15 14 13 17 17 C 1.37876 * 120.00195 * 271.57746 * 15 14 13 18 18 N 1.31520 * 119.99580 * 182.82503 * 17 15 14 19 19 Si 1.86794 * 120.00247 * 2.81768 * 17 15 14 20 20 H 1.48501 * 109.47098 * 265.08472 * 19 17 15 21 21 H 1.48506 * 109.46958 * 25.08028 * 19 17 15 22 22 H 1.48500 * 109.47242 * 145.08036 * 19 17 15 23 23 C 1.52997 * 117.49992 * 79.99775 * 14 13 10 24 24 C 1.53002 * 117.49718 * 148.65983 * 14 13 10 25 25 H 1.08999 * 109.47121 * 292.99837 * 1 2 3 26 26 H 1.09003 * 109.47345 * 53.00230 * 1 2 3 27 27 H 1.09002 * 109.46988 * 173.00182 * 1 2 3 28 28 H 1.09005 * 109.47225 * 239.99924 * 2 1 3 29 29 H 1.09004 * 109.46975 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46866 * 299.99815 * 3 2 1 31 31 H 1.08999 * 109.46764 * 60.00437 * 3 2 1 32 32 H 1.08999 * 109.47020 * 296.44355 * 4 2 1 33 33 H 1.09000 * 109.47110 * 176.44910 * 4 2 1 34 34 H 1.09000 * 109.46820 * 34.62443 * 6 5 4 35 35 H 1.09001 * 109.46583 * 154.62634 * 6 5 4 36 36 H 0.96996 * 119.99417 * 359.97438 * 8 7 6 37 37 H 0.96996 * 119.99879 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47645 * 66.19599 * 13 10 5 39 39 H 1.09004 * 109.47179 * 306.20011 * 13 10 5 40 40 H 0.97004 * 119.99255 * 180.02562 * 18 17 15 41 41 H 1.09003 * 117.50010 * 215.00417 * 23 14 13 42 42 H 1.08999 * 117.49839 * 0.02562 * 23 14 13 43 43 H 1.08997 * 117.50116 * 359.96971 * 24 14 13 44 44 H 1.09003 * 117.49921 * 144.97684 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4831 -2.0756 1.2927 6 6 0.1794 -2.3117 1.9180 7 6 0.3612 -2.5031 3.4016 8 7 -0.7089 -2.7364 4.1872 9 8 1.4704 -2.4473 3.8889 10 16 2.3271 -3.3395 0.6352 11 8 3.1404 -2.7368 -0.3620 12 8 1.3263 -4.2874 0.2900 13 6 3.3483 -3.9605 1.9997 14 6 4.2966 -5.0412 1.4763 15 6 3.6356 -6.3024 0.9831 16 1 3.3646 -6.3985 -0.0580 17 6 3.3767 -7.3337 1.8608 18 7 2.8508 -8.4558 1.4202 19 14 3.7731 -7.1374 3.6756 20 1 5.1158 -7.7076 3.9535 21 1 3.7646 -5.6954 4.0309 22 1 2.7542 -7.8527 4.4851 23 6 5.5645 -4.5795 0.7551 24 6 5.6580 -5.1783 2.1608 25 1 -0.3633 0.4015 0.9460 26 1 -0.3634 0.6184 -0.8208 27 1 -0.3633 -1.0200 -0.1252 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.7296 -0.1720 2.1380 33 1 3.1281 -0.7768 1.2179 34 1 -0.4700 -1.4547 1.7391 35 1 -0.2726 -3.2060 1.4889 36 1 -1.5961 -2.7807 3.7975 37 1 -0.5919 -2.8592 5.1422 38 1 2.7054 -4.3839 2.7713 39 1 3.9296 -3.1402 2.4210 40 1 2.6684 -9.1812 2.0379 41 1 5.9206 -5.1881 -0.0762 42 1 5.7234 -3.5059 0.6539 43 1 5.8784 -4.4983 2.9837 44 1 6.0755 -6.1808 2.2546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346459083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:11 Heat of formation + Delta-G solvation = -86.048223 kcal Electronic energy + Delta-G solvation = -27094.041626 eV Core-core repulsion = 23367.575521 eV Total energy + Delta-G solvation = -3726.466105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.60767 -37.38993 -37.04990 -36.33076 -35.14765 -33.73130 -33.57440 -32.11580 -28.55693 -28.31595 -27.11375 -25.50187 -24.84098 -21.66176 -20.94390 -20.43599 -19.33445 -18.35387 -17.56682 -17.19582 -16.89429 -16.46136 -15.96943 -15.17905 -15.01256 -14.85104 -14.64106 -14.38098 -14.08674 -13.78637 -13.49867 -13.01323 -12.86360 -12.67582 -12.46984 -12.18650 -12.05880 -11.98442 -11.64282 -11.38011 -11.22035 -11.19387 -11.08064 -10.90148 -10.81072 -10.59134 -10.55842 -10.33402 -10.23411 -9.98738 -9.73538 -9.63389 -9.08816 -8.89407 -8.61762 -8.34548 -6.12886 -4.20132 0.94933 2.60057 3.07286 3.27434 3.37040 3.46766 3.57684 4.41238 4.48770 4.67783 4.72109 4.83413 4.88591 4.93905 4.96269 5.10121 5.14163 5.28394 5.35346 5.52159 5.56421 5.60753 5.73573 5.78561 5.83092 5.86704 5.96677 6.06219 6.08577 6.13545 6.24755 6.37267 6.39667 6.49915 6.63781 6.71149 6.76860 6.98312 7.12513 7.25149 7.65398 8.21431 8.41254 8.91267 9.49056 10.98282 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.005914 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.092054 B = 4733.009832 C = 5507.558358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.135 3.865 5 N -0.988 5.988 6 C 0.088 3.912 7 C 0.490 3.510 8 N -0.857 5.857 9 O -0.528 6.528 10 S 2.610 3.390 11 O -0.960 6.960 12 O -0.943 6.943 13 C -0.559 4.559 14 C -0.001 4.001 15 C -0.507 4.507 16 H 0.086 0.914 17 C 0.089 3.911 18 N -0.885 5.885 19 Si 0.869 3.131 20 H -0.276 1.276 21 H -0.251 1.251 22 H -0.292 1.292 23 C -0.178 4.178 24 C -0.184 4.184 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.401 0.599 37 H 0.401 0.599 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.266 0.734 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 17.851 3.525 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.201 4.201 4 C 0.010 3.990 5 N -0.821 5.821 6 C -0.042 4.042 7 C 0.273 3.727 8 N -0.422 5.422 9 O -0.404 6.404 10 S 2.708 3.292 11 O -0.951 6.951 12 O -0.933 6.933 13 C -0.692 4.692 14 C -0.003 4.003 15 C -0.544 4.544 16 H 0.104 0.896 17 C -0.115 4.115 18 N -0.520 5.520 19 Si 0.696 3.304 20 H -0.202 1.202 21 H -0.175 1.175 22 H -0.218 1.218 23 C -0.215 4.215 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.230 0.770 37 H 0.231 0.769 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.167 17.467 2.784 19.085 hybrid contribution -0.083 -0.126 2.173 2.178 sum -7.251 17.342 4.957 19.439 Atomic orbital electron populations 1.21952 0.95496 1.01971 1.01180 1.21643 0.96211 0.96459 0.99922 1.21761 1.01347 0.95440 1.01565 1.21256 0.98386 0.81768 0.97628 1.57685 1.28875 1.21433 1.74075 1.21403 0.87528 1.06066 0.89203 1.21596 0.84847 0.75700 0.90566 1.43855 1.10092 1.76276 1.11929 1.90765 1.24380 1.49340 1.75874 1.05216 0.75064 0.72474 0.76495 1.93502 1.70556 1.75981 1.55060 1.93549 1.57075 1.60799 1.81905 1.30184 1.13375 1.07945 1.17666 1.18930 0.85752 0.95073 1.00584 1.20347 1.40190 0.96261 0.97602 0.89602 1.24929 0.93461 0.94598 0.98553 1.69905 1.42258 1.04426 1.35438 0.86974 0.78079 0.79780 0.85561 1.20224 1.17462 1.21838 1.23027 1.03804 0.99320 0.95353 1.22969 1.02940 1.01386 0.95033 0.92950 0.92746 0.92057 0.89606 0.92366 0.92530 0.92857 0.90748 0.90105 0.86725 0.85556 0.77046 0.76873 0.85591 0.87477 0.92401 0.88701 0.90033 0.90609 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.64 37.16 0.28 -1.13 16 2 C -0.12 -1.39 3.17 -90.62 -0.29 -1.68 16 3 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16 4 C 0.14 1.72 4.84 -4.05 -0.02 1.70 16 5 N -0.99 -14.88 1.93 -115.67 -0.22 -15.11 16 6 C 0.09 1.07 5.14 -5.19 -0.03 1.04 16 7 C 0.49 6.40 8.17 -10.98 -0.09 6.31 16 8 N -0.86 -7.44 8.87 31.22 0.28 -7.17 16 9 O -0.53 -9.02 16.04 5.56 0.09 -8.93 16 10 S 2.61 53.26 5.12 -107.50 -0.55 52.71 16 11 O -0.96 -20.55 16.53 -57.54 -0.95 -21.50 16 12 O -0.94 -22.22 16.22 -57.54 -0.93 -23.15 16 13 C -0.56 -12.14 4.99 37.16 0.19 -11.96 16 14 C 0.00 -0.01 0.77 -155.66 -0.12 -0.13 16 15 C -0.51 -14.61 8.81 -34.44 -0.30 -14.92 16 16 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 17 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 18 N -0.88 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.87 22.01 24.90 -169.99 -4.23 17.78 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.25 -6.11 5.70 56.52 0.32 -5.79 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C -0.18 -3.85 9.96 -26.69 -0.27 -4.11 16 24 C -0.18 -4.07 7.50 -26.69 -0.20 -4.27 16 25 H 0.05 0.41 7.56 -51.93 -0.39 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 28 H 0.09 1.18 7.65 -51.93 -0.40 0.78 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.08 1.06 7.69 -51.93 -0.40 0.66 16 34 H 0.12 0.95 5.41 -51.93 -0.28 0.67 16 35 H 0.13 1.58 6.82 -51.93 -0.35 1.23 16 36 H 0.40 2.08 8.83 -40.82 -0.36 1.72 16 37 H 0.40 3.20 8.93 -40.82 -0.36 2.83 16 38 H 0.13 2.86 6.25 -51.93 -0.32 2.54 16 39 H 0.11 2.04 8.09 -51.92 -0.42 1.62 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 2.07 7.20 -51.93 -0.37 1.70 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -37.13 361.47 -7.92 -45.05 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.02 Total: 8.95 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -0.60 Total: -27.61 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.83 Total: -48.76 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.80 Total: -53.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.23 Total: 17.78 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.55 Total: 52.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.13 -7.92 -45.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346459083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.995 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds