Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.55793 * 2 1 4 4 C 1.53180 * 109.55892 * 239.78731 * 2 1 3 5 5 H 1.09001 * 109.45779 * 178.40851 * 4 2 1 6 6 C 1.52993 * 109.46469 * 58.42377 * 4 2 1 7 7 N 1.46391 * 109.50712 * 298.41622 * 4 2 1 8 8 C 1.34778 * 119.70058 * 115.68078 * 7 4 2 9 9 O 1.21584 * 119.99550 * 5.59854 * 8 7 4 10 10 N 1.34767 * 120.00058 * 185.59584 * 8 7 4 11 11 C 1.46498 * 120.00148 * 175.03795 * 10 8 7 12 12 C 1.52999 * 109.47580 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46899 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99960 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99993 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47176 * 269.99833 * 18 16 14 20 20 H 1.48494 * 109.47213 * 29.99951 * 18 16 14 21 21 H 1.48500 * 109.47075 * 150.00139 * 18 16 14 22 22 C 1.46383 * 120.60110 * 295.95958 * 7 4 2 23 23 C 1.52708 * 109.77342 * 64.03371 * 22 7 4 24 24 S 1.81665 * 108.99326 * 301.91449 * 23 22 7 25 25 O 1.42096 * 108.65060 * 301.10111 * 24 23 22 26 26 O 1.42102 * 108.65021 * 169.80424 * 24 23 22 27 27 H 1.09001 * 109.46956 * 180.21514 * 1 2 3 28 28 H 1.09001 * 109.47069 * 300.21557 * 1 2 3 29 29 H 1.09000 * 109.47442 * 60.21481 * 1 2 3 30 30 H 1.08996 * 109.47613 * 301.30667 * 6 4 2 31 31 H 1.09002 * 109.46776 * 61.30550 * 6 4 2 32 32 H 1.09005 * 109.47087 * 181.30429 * 6 4 2 33 33 H 0.96998 * 120.00439 * 355.03348 * 10 8 7 34 34 H 1.09001 * 109.47117 * 60.00020 * 11 10 8 35 35 H 1.09002 * 109.47103 * 300.00073 * 11 10 8 36 36 H 1.09006 * 109.47166 * 59.99691 * 12 11 10 37 37 H 1.09002 * 109.47068 * 300.00223 * 12 11 10 38 38 H 1.08993 * 109.47271 * 60.00059 * 13 12 11 39 39 H 1.08996 * 109.47381 * 299.99751 * 13 12 11 40 40 H 0.96998 * 120.00655 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46583 * 184.05438 * 22 7 4 42 42 H 1.09005 * 109.46740 * 304.03187 * 22 7 4 43 43 H 1.09004 * 109.62413 * 182.00185 * 23 22 7 44 44 H 1.09002 * 109.53380 * 61.76752 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0428 -0.7263 -1.2473 5 1 3.1325 -0.7008 -1.2602 6 6 1.5018 -0.0333 -2.4994 7 7 1.5877 -2.1175 -1.2247 8 6 0.7418 -2.5590 -2.1765 9 8 0.4401 -1.8345 -3.1051 10 7 0.2304 -3.8034 -2.0989 11 6 -0.7718 -4.2455 -3.0718 12 6 -1.1826 -5.6864 -2.7620 13 6 -2.2297 -6.1478 -3.7777 14 6 -2.6347 -7.5669 -3.4721 15 1 -2.1895 -8.0877 -2.6373 16 6 -3.5737 -8.2003 -4.2583 17 7 -4.1155 -7.5663 -5.2753 18 14 -4.0752 -9.9594 -3.8800 19 1 -3.1896 -10.8961 -4.6172 20 1 -3.9520 -10.2064 -2.4210 21 1 -5.4829 -10.1743 -4.3013 22 6 2.0383 -3.0319 -0.1741 23 6 1.5299 -2.5503 1.1829 24 16 2.1382 -0.8641 1.4777 25 8 3.5586 -0.8807 1.4422 26 8 1.4760 -0.3351 2.6184 27 1 -0.3633 -1.0277 0.0039 28 1 -0.3633 0.5172 0.8881 29 1 -0.3634 0.5105 -0.8919 30 1 0.4121 -0.0380 -2.4751 31 1 1.8601 0.9957 -2.5286 32 1 1.8477 -0.5639 -3.3866 33 1 0.5258 -4.4065 -1.3990 34 1 -0.3501 -4.1962 -4.0757 35 1 -1.6461 -3.5974 -3.0128 36 1 -1.6042 -5.7362 -1.7580 37 1 -0.3080 -6.3343 -2.8213 38 1 -1.8086 -6.0980 -4.7818 39 1 -3.1041 -5.4999 -3.7179 40 1 -4.7763 -8.0117 -5.8282 41 1 1.6500 -4.0312 -0.3712 42 1 3.1278 -3.0618 -0.1612 43 1 1.8962 -3.2128 1.9672 44 1 0.4399 -2.5506 1.1848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346632953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = -78.281299 kcal Electronic energy + Delta-G solvation = -25764.082788 eV Core-core repulsion = 22037.953482 eV Total energy + Delta-G solvation = -3726.129306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -41.04196 -37.65355 -37.31707 -36.43520 -35.80619 -34.59722 -33.18129 -31.57314 -31.17597 -29.04421 -26.71881 -25.69958 -24.35437 -23.35590 -21.72038 -20.77783 -19.97818 -18.96375 -18.11705 -17.19731 -16.81664 -16.66635 -16.52320 -16.02622 -15.98563 -15.08963 -15.05233 -14.49035 -14.12024 -13.96555 -13.84804 -13.58158 -13.43973 -13.15302 -12.79918 -12.52848 -12.45618 -12.39343 -12.31961 -12.14867 -11.98290 -11.86319 -11.79941 -11.39861 -11.18374 -10.94688 -10.77715 -10.63144 -10.46944 -9.93780 -9.61644 -9.26892 -9.19954 -9.12498 -8.78875 -8.42124 -6.06749 -4.10135 -0.43648 2.18026 2.27653 3.01557 3.21091 3.27188 3.33943 3.36183 3.52283 3.65328 3.80846 4.12188 4.22444 4.40001 4.45556 4.52271 4.60974 4.91491 5.01068 5.04982 5.18592 5.28649 5.29208 5.30612 5.54923 5.57078 5.70624 5.72876 5.98262 6.00767 6.07902 6.32939 6.47692 6.52303 6.60905 6.80517 6.93453 7.57586 7.69683 7.82195 7.91526 8.32086 8.50649 8.96467 9.54394 11.04475 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.002665 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.216722 B =10504.609955 C =11100.401852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.580 4.580 3 H 0.150 0.850 4 C 0.176 3.824 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.641 5.641 8 C 0.704 3.296 9 O -0.570 6.570 10 N -0.741 5.741 11 C 0.133 3.867 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.286 1.286 22 C 0.121 3.879 23 C -0.628 4.628 24 S 2.417 3.583 25 O -0.936 6.936 26 O -0.937 6.937 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.392 0.608 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.148 0.852 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.884 14.531 12.567 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.691 4.691 3 H 0.168 0.832 4 C 0.071 3.929 5 H 0.113 0.887 6 C -0.188 4.188 7 N -0.380 5.380 8 C 0.406 3.594 9 O -0.447 6.447 10 N -0.398 5.398 11 C 0.010 3.990 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.004 4.004 23 C -0.758 4.758 24 S 2.600 3.400 25 O -0.933 6.933 26 O -0.934 6.934 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.166 0.834 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.991 15.358 12.447 24.219 hybrid contribution -0.674 -1.661 0.067 1.794 sum 13.317 13.697 12.514 22.838 Atomic orbital electron populations 1.21664 0.89255 1.03875 1.04901 1.30526 1.08109 1.13349 1.17144 0.83245 1.20767 0.98728 0.78886 0.94555 0.88732 1.22295 1.03601 0.97504 0.95398 1.47349 1.50581 1.11057 1.28965 1.15970 0.78618 0.82507 0.82262 1.91011 1.64283 1.55066 1.34323 1.45805 1.45516 1.13277 1.35234 1.21561 0.89470 0.96763 0.91216 1.21900 1.00620 0.91915 1.01469 1.19016 0.92723 0.96080 0.93465 1.21190 1.23048 0.98349 1.13612 0.92675 1.25027 0.96226 0.98092 0.95080 1.69957 1.28535 1.37144 1.17576 0.86581 0.77823 0.84925 0.78583 1.20641 1.19897 1.21189 1.21119 1.01049 0.94957 0.83256 1.30559 1.13891 1.24607 1.06782 1.08188 0.75917 0.78710 0.77225 1.93593 1.26810 1.86010 1.86865 1.93597 1.76881 1.77073 1.45817 0.91444 0.90568 0.89466 0.89645 0.94049 0.89906 0.77170 0.91669 0.91853 0.92813 0.92749 0.96235 0.96262 0.92878 0.87698 0.88484 0.83411 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 154. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.45 37.16 0.31 -0.74 16 2 C -0.58 -4.09 2.93 -26.64 -0.08 -4.17 16 3 H 0.15 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.18 1.48 2.99 -67.90 -0.20 1.28 16 5 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.13 -1.31 7.19 37.15 0.27 -1.05 16 7 N -0.64 -5.84 2.13 -172.05 -0.37 -6.21 16 8 C 0.70 8.93 8.11 -86.93 -0.71 8.23 16 9 O -0.57 -8.97 11.50 5.29 0.06 -8.91 16 10 N -0.74 -9.27 5.45 -65.23 -0.36 -9.63 16 11 C 0.13 2.13 5.68 -4.04 -0.02 2.10 16 12 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.12 0.77 6.13 -4.25 -0.03 0.75 16 23 C -0.63 -3.50 6.10 37.01 0.23 -3.27 16 24 S 2.42 18.97 4.82 -107.50 -0.52 18.45 16 25 O -0.94 -9.79 18.02 -57.81 -1.04 -10.84 16 26 O -0.94 -10.39 17.79 -57.81 -1.03 -11.42 16 27 H 0.07 0.53 6.27 -51.93 -0.33 0.21 16 28 H 0.08 0.52 8.00 -51.93 -0.42 0.10 16 29 H 0.09 0.70 6.38 -51.93 -0.33 0.37 16 30 H 0.08 1.00 4.83 -51.93 -0.25 0.75 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 1.01 6.70 -51.93 -0.35 0.66 16 33 H 0.39 3.84 5.85 -40.82 -0.24 3.60 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.10 0.56 5.47 -51.93 -0.28 0.28 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.15 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.14 0.70 7.16 -51.93 -0.37 0.33 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -35.46 352.53 -9.90 -45.36 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.76 Total: -0.85 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.92 Total: -11.76 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.01 Total: -41.37 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -2.01 Total: -31.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 18.97 SS G_CDS: -0.52 Total: 18.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.46 -9.90 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346632953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.925 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds