Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.64428 * 2 1 4 4 C 1.53188 * 109.55514 * 239.73622 * 2 1 3 5 5 N 1.46381 * 109.50578 * 181.90253 * 4 2 1 6 6 C 1.34773 * 119.69956 * 244.26942 * 5 4 2 7 7 O 1.21584 * 120.00231 * 185.28130 * 6 5 4 8 8 N 1.34776 * 120.00163 * 5.28206 * 6 5 4 9 9 C 1.46502 * 120.00468 * 175.01214 * 8 6 5 10 10 C 1.52999 * 109.47116 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46714 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46972 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00196 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00341 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99373 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00223 * 180.27674 * 14 12 11 17 17 H 1.48499 * 109.46996 * 269.72705 * 16 14 12 18 18 H 1.48494 * 109.47304 * 29.72355 * 16 14 12 19 19 H 1.48495 * 109.47107 * 149.72536 * 16 14 12 20 20 C 1.46386 * 120.60246 * 64.55205 * 5 4 2 21 21 C 1.53660 * 109.25211 * 295.44072 * 20 5 4 22 22 H 1.09000 * 109.58540 * 178.24924 * 21 20 5 23 23 C 1.53003 * 109.66602 * 298.54679 * 21 20 5 24 24 S 1.81666 * 109.55705 * 120.27086 * 2 1 3 25 25 O 1.42105 * 108.64844 * 289.74715 * 24 2 1 26 26 O 1.42092 * 108.65285 * 61.05065 * 24 2 1 27 27 H 1.09001 * 109.47485 * 180.26436 * 1 2 3 28 28 H 1.09004 * 109.47194 * 300.26583 * 1 2 3 29 29 H 1.09003 * 109.47451 * 60.26217 * 1 2 3 30 30 H 1.08993 * 109.46591 * 61.88781 * 4 2 1 31 31 H 1.08997 * 109.46347 * 301.91394 * 4 2 1 32 32 H 0.97000 * 119.99696 * 355.01827 * 8 6 5 33 33 H 1.08991 * 109.46682 * 59.99986 * 9 8 6 34 34 H 1.09003 * 109.46857 * 300.00184 * 9 8 6 35 35 H 1.08998 * 109.47184 * 60.00210 * 10 9 8 36 36 H 1.09003 * 109.46934 * 299.99556 * 10 9 8 37 37 H 1.08998 * 109.47196 * 60.00128 * 11 10 9 38 38 H 1.08995 * 109.47135 * 299.99713 * 11 10 9 39 39 H 0.97008 * 119.99698 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.46449 * 55.45601 * 20 5 4 41 41 H 1.09003 * 109.46777 * 175.42983 * 20 5 4 42 42 H 1.08993 * 109.47211 * 179.47414 * 23 21 20 43 43 H 1.09003 * 109.46826 * 299.47858 * 23 21 20 44 44 H 1.09001 * 109.46809 * 59.47720 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0266 0.0000 4 6 2.0427 -0.7275 -1.2468 5 7 3.5058 -0.7666 -1.2228 6 6 4.2068 -0.1194 -2.1748 7 8 5.4171 -0.2265 -2.2172 8 7 3.5660 0.6467 -3.0798 9 6 4.3338 1.4364 -4.0459 10 6 3.3727 2.2096 -4.9510 11 6 4.1745 3.0338 -5.9603 12 6 3.2279 3.7949 -6.8523 13 1 2.1610 3.6999 -6.7136 14 6 3.7237 4.6126 -7.8456 15 7 5.0227 4.7278 -8.0149 16 14 2.5504 5.5619 -8.9463 17 1 2.2177 4.7420 -10.1389 18 1 1.3071 5.8703 -8.1952 19 1 3.1936 6.8281 -9.3799 20 6 4.2145 -1.5073 -0.1779 21 6 3.9310 -0.8570 1.1852 22 1 4.4311 -1.4229 1.9711 23 6 4.4453 0.5840 1.1851 24 16 2.1381 -0.8629 1.4784 25 8 1.8615 -0.0611 2.6186 26 8 1.6762 -2.2062 1.4428 27 1 -0.3634 -1.0276 0.0047 28 1 -0.3634 0.5180 0.8876 29 1 -0.3634 0.5098 -0.8923 30 1 1.7080 -0.1988 -2.1392 31 1 1.6524 -1.7451 -1.2598 32 1 2.5965 0.6752 -3.0915 33 1 4.9485 0.7711 -4.6520 34 1 4.9749 2.1388 -3.5131 35 1 2.7582 2.8749 -4.3445 36 1 2.7312 1.5075 -5.4838 37 1 4.7886 2.3682 -6.5668 38 1 4.8162 3.7358 -5.4279 39 1 5.3716 5.3028 -8.7140 40 1 3.8699 -2.5414 -0.1683 41 1 5.2857 -1.4834 -0.3785 42 1 4.2342 1.0451 2.1499 43 1 5.5210 0.5859 1.0090 44 1 3.9469 1.1476 0.3963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357738972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -101.913923 kcal Electronic energy + Delta-G solvation = -25573.577228 eV Core-core repulsion = 21846.423135 eV Total energy + Delta-G solvation = -3727.154094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.71014 -37.65821 -37.23916 -36.44882 -35.72211 -34.68186 -33.44783 -32.73081 -31.10457 -27.83665 -27.13382 -26.07566 -23.43350 -23.19965 -22.38360 -20.76187 -20.15270 -18.95326 -18.50158 -17.24930 -16.98922 -16.54874 -16.41455 -15.96948 -15.93071 -15.10159 -14.92634 -14.52517 -14.33070 -14.03386 -13.75783 -13.68063 -13.37668 -13.24376 -12.88590 -12.66021 -12.47988 -12.43024 -12.31722 -12.29235 -12.03146 -11.87670 -11.79251 -11.77846 -11.02412 -10.95209 -10.80570 -10.64973 -10.51187 -10.17706 -9.94509 -9.52327 -9.33302 -9.18536 -8.80765 -8.42089 -6.06686 -4.10075 -0.44797 2.19566 2.27730 2.98569 3.18158 3.27219 3.33965 3.36205 3.51936 3.64770 3.75976 4.09212 4.13155 4.35392 4.40132 4.44914 4.61580 4.78453 5.00735 5.02676 5.10292 5.20134 5.28819 5.29307 5.30623 5.38891 5.53256 5.56923 5.70257 5.74022 5.97835 6.07449 6.35248 6.48582 6.51846 6.79518 6.92518 7.57619 7.69654 7.78841 7.91561 8.31941 8.45556 8.96477 9.54436 11.04547 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.002659 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.976457 B =10526.819488 C =11142.020588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.588 4.588 3 H 0.145 0.855 4 C 0.124 3.876 5 N -0.644 5.644 6 C 0.706 3.294 7 O -0.578 6.578 8 N -0.739 5.739 9 C 0.132 3.868 10 C -0.121 4.121 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.286 1.286 20 C 0.140 3.860 21 C -0.583 4.583 22 H 0.149 0.851 23 C -0.137 4.137 24 S 2.417 3.583 25 O -0.935 6.935 26 O -0.934 6.934 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -12.759 19.477 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.699 4.699 3 H 0.163 0.837 4 C -0.001 4.001 5 N -0.382 5.382 6 C 0.408 3.592 7 O -0.455 6.455 8 N -0.396 5.396 9 C 0.009 3.991 10 C -0.159 4.159 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.212 1.212 20 C 0.016 3.984 21 C -0.694 4.694 22 H 0.167 0.833 23 C -0.195 4.195 24 S 2.599 3.401 25 O -0.932 6.932 26 O -0.931 6.931 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.258 -13.061 20.023 24.712 hybrid contribution -0.599 1.003 -1.246 1.708 sum -6.856 -12.058 18.777 23.345 Atomic orbital electron populations 1.21581 0.88787 1.04299 1.05174 1.30456 1.07418 1.14332 1.17710 0.83722 1.21395 0.79939 1.01850 0.96900 1.47281 1.05448 1.55782 1.29671 1.15885 0.85288 0.78578 0.79474 1.90931 1.11850 1.67289 1.75446 1.45655 1.10082 1.48438 1.35414 1.21592 0.94680 0.93392 0.89428 1.21902 0.98180 0.98340 0.97457 1.19020 0.95247 0.94342 0.92697 1.21186 0.92976 1.26474 1.15554 0.92667 1.25029 0.95077 0.96825 0.97507 1.69964 1.11498 1.38873 1.32865 0.86578 0.80983 0.79459 0.80873 1.20647 1.19892 1.21187 1.21256 1.01998 0.93821 0.81340 1.30525 1.24887 1.06737 1.07240 0.83282 1.21602 1.04325 0.90369 1.03228 1.08383 0.78453 0.76083 0.77187 1.93586 1.83144 1.70820 1.45672 1.93578 1.78799 1.33928 1.86761 0.90476 0.90537 0.89395 0.87731 0.88433 0.76964 0.91621 0.91803 0.92766 0.92715 0.96218 0.96244 0.92881 0.89032 0.86029 0.90529 0.89761 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 84. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.21 37.16 0.34 -0.42 16 2 C -0.59 -3.80 2.78 -26.63 -0.07 -3.87 16 3 H 0.14 0.83 7.17 -51.93 -0.37 0.45 16 4 C 0.12 0.84 5.45 -4.01 -0.02 0.82 16 5 N -0.64 -6.03 2.10 -179.09 -0.38 -6.40 16 6 C 0.71 9.40 8.18 -86.92 -0.71 8.69 16 7 O -0.58 -9.96 15.66 5.29 0.08 -9.88 16 8 N -0.74 -9.51 5.46 -65.23 -0.36 -9.87 16 9 C 0.13 2.16 5.68 -4.04 -0.02 2.13 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 13 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.14 1.15 5.67 -3.76 -0.02 1.13 16 21 C -0.58 -4.15 3.39 -26.39 -0.09 -4.24 16 22 H 0.15 0.73 8.14 -51.93 -0.42 0.31 16 23 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 24 S 2.42 20.19 4.19 -107.50 -0.45 19.74 16 25 O -0.94 -10.64 17.78 -57.81 -1.03 -11.67 16 26 O -0.93 -9.90 18.01 -57.81 -1.04 -10.94 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.59 5.47 -51.93 -0.28 0.31 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.39 3.93 5.85 -40.82 -0.24 3.69 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 1.15 6.88 -51.93 -0.36 0.80 16 42 H 0.08 0.54 7.98 -51.93 -0.41 0.13 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.56 6.26 -51.93 -0.32 0.23 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -35.89 362.88 -9.97 -45.87 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.03 Total: -1.33 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.96 Total: -11.43 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.00 Total: -41.84 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.99 Total: -32.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 20.19 SS G_CDS: -0.45 Total: 19.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.89 -9.97 -45.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357738972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.048 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds