Wall clock time and date at job start Tue Mar 31 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.64539 * 2 1 4 4 C 1.53190 * 109.55370 * 120.25967 * 2 1 3 5 5 N 1.46392 * 109.50800 * 61.58660 * 4 2 1 6 6 C 1.34769 * 119.70019 * 244.27548 * 5 4 2 7 7 O 1.21594 * 119.99780 * 5.06864 * 6 5 4 8 8 N 1.34773 * 120.00453 * 185.07714 * 6 5 4 9 9 C 1.46497 * 120.00463 * 174.91868 * 8 6 5 10 10 C 1.53004 * 109.46951 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46673 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46735 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99666 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00305 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99941 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47316 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47577 * 59.99995 * 16 14 12 19 19 H 1.48506 * 109.47074 * 299.99782 * 16 14 12 20 20 C 1.46387 * 120.59828 * 64.54813 * 5 4 2 21 21 C 1.53659 * 109.25248 * 295.44419 * 20 5 4 22 22 H 1.09003 * 109.66598 * 298.54884 * 21 20 5 23 23 C 1.52997 * 109.49363 * 178.20376 * 21 20 5 24 24 S 1.81660 * 109.56185 * 239.72734 * 2 1 3 25 25 O 1.42102 * 108.65040 * 50.07643 * 24 2 1 26 26 O 1.42103 * 108.65325 * 181.37644 * 24 2 1 27 27 H 1.09005 * 109.47568 * 299.74236 * 1 2 3 28 28 H 1.09011 * 109.46654 * 59.73713 * 1 2 3 29 29 H 1.08995 * 109.47463 * 179.72989 * 1 2 3 30 30 H 1.08994 * 109.46443 * 301.57675 * 4 2 1 31 31 H 1.09001 * 109.46164 * 181.59498 * 4 2 1 32 32 H 0.97005 * 119.99686 * 354.91249 * 8 6 5 33 33 H 1.08998 * 109.47296 * 59.99925 * 9 8 6 34 34 H 1.08999 * 109.47165 * 299.99551 * 9 8 6 35 35 H 1.08995 * 109.47057 * 60.00536 * 10 9 8 36 36 H 1.08996 * 109.47430 * 299.99529 * 10 9 8 37 37 H 1.09004 * 109.46424 * 60.00675 * 11 10 9 38 38 H 1.08996 * 109.47143 * 300.00114 * 11 10 9 39 39 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 40 40 H 1.08998 * 109.46507 * 55.46105 * 20 5 4 41 41 H 1.09004 * 109.46206 * 175.43811 * 20 5 4 42 42 H 1.09003 * 109.46939 * 300.62441 * 23 21 20 43 43 H 1.08994 * 109.47515 * 60.62590 * 23 21 20 44 44 H 1.09005 * 109.47119 * 180.63048 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0266 0.0000 4 6 2.0427 -0.7274 1.2469 5 7 1.5876 -2.1186 1.2230 6 6 0.7423 -2.5611 2.1748 7 8 0.2887 -1.7849 2.9936 8 7 0.3999 -3.8638 2.2194 9 6 -0.4289 -4.3662 3.3179 10 6 -0.6700 -5.8655 3.1305 11 6 -1.5351 -6.3903 4.2782 12 6 -1.7730 -7.8669 4.0932 13 1 -1.3492 -8.3798 3.2424 14 6 -2.5317 -8.5631 5.0101 15 7 -3.0481 -7.9385 6.0458 16 14 -2.8260 -10.3934 4.7813 17 1 -3.6668 -10.9026 5.8944 18 1 -1.5240 -11.1076 4.7771 19 1 -3.5220 -10.6253 3.4900 20 6 2.0470 -3.0351 0.1780 21 6 1.5299 -2.5494 -1.1850 22 1 0.4399 -2.5493 -1.1850 23 6 2.0442 -3.4783 -2.2866 24 16 2.1382 -0.8629 -1.4783 25 8 1.4762 -0.3329 -2.6185 26 8 3.5587 -0.8796 -1.4427 27 1 -0.3634 0.5098 0.8923 28 1 -0.3633 0.5180 -0.8877 29 1 -0.3634 -1.0276 -0.0048 30 1 1.6572 -0.2345 2.1392 31 1 3.1323 -0.7019 1.2599 32 1 0.7021 -4.4688 1.5240 33 1 -1.3849 -3.8425 3.3209 34 1 0.0817 -4.1957 4.2657 35 1 0.2857 -6.3895 3.1274 36 1 -1.1808 -6.0357 2.1828 37 1 -2.4909 -5.8663 4.2816 38 1 -1.0239 -6.2202 5.2257 39 1 -2.8950 -6.9881 6.1649 40 1 3.1367 -3.0582 0.1686 41 1 1.6643 -4.0358 0.3786 42 1 3.1342 -3.4799 -2.2810 43 1 1.6784 -4.4896 -2.1093 44 1 1.6864 -3.1270 -3.2545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357738974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:20 Heat of formation + Delta-G solvation = -105.467035 kcal Electronic energy + Delta-G solvation = -25557.718200 eV Core-core repulsion = 21830.410032 eV Total energy + Delta-G solvation = -3727.308168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76427 -37.69985 -37.28136 -36.47838 -35.81929 -34.76687 -33.67969 -32.82001 -31.02817 -27.82954 -27.04708 -25.87411 -23.34190 -23.22363 -22.42632 -21.01254 -20.26305 -19.01627 -18.56599 -17.29641 -17.07504 -16.79365 -16.50339 -16.08606 -16.00131 -15.16161 -14.94264 -14.44896 -14.22305 -13.77931 -13.75655 -13.70781 -13.41195 -13.27018 -13.06676 -12.87500 -12.68027 -12.50667 -12.45065 -12.33314 -12.07000 -11.92728 -11.82494 -11.67058 -11.06725 -10.95132 -10.84194 -10.59445 -10.27843 -10.16832 -10.09528 -9.88768 -9.38339 -8.88392 -8.63509 -8.38705 -6.41763 -4.12103 -0.48020 2.16364 2.22670 2.92135 3.14471 3.39827 3.41498 3.49832 3.57725 3.60659 3.71886 4.06830 4.09237 4.32433 4.40794 4.49914 4.58391 4.74010 4.97179 4.99491 5.06481 5.17073 5.25647 5.27775 5.34577 5.35345 5.46205 5.50242 5.59293 5.72450 5.92180 5.95763 6.24872 6.38696 6.41643 6.68608 6.76413 7.28939 7.41364 7.72144 8.12053 8.38985 8.39113 8.81778 9.60600 10.98988 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024862 B = 0.002602 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.965135 B =10758.546440 C =11399.432930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.583 4.583 3 H 0.150 0.850 4 C 0.140 3.860 5 N -0.643 5.643 6 C 0.707 3.293 7 O -0.578 6.578 8 N -0.739 5.739 9 C 0.132 3.868 10 C -0.114 4.114 11 C 0.012 3.988 12 C -0.605 4.605 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.911 5.911 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.124 3.876 21 C -0.588 4.588 22 H 0.144 0.856 23 C -0.140 4.140 24 S 2.418 3.582 25 O -0.935 6.935 26 O -0.933 6.933 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.394 0.606 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.270 0.730 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.308 14.362 -16.375 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.694 4.694 3 H 0.168 0.832 4 C 0.016 3.984 5 N -0.381 5.381 6 C 0.408 3.592 7 O -0.455 6.455 8 N -0.396 5.396 9 C 0.009 3.991 10 C -0.152 4.152 11 C -0.026 4.026 12 C -0.643 4.643 13 H 0.067 0.933 14 C -0.189 4.189 15 N -0.547 5.547 16 Si 0.897 3.103 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.001 4.001 21 C -0.699 4.699 22 H 0.162 0.838 23 C -0.199 4.199 24 S 2.599 3.401 25 O -0.932 6.932 26 O -0.930 6.930 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.702 13.929 -15.756 24.066 hybrid contribution 0.397 0.809 -0.486 1.024 sum 12.099 14.738 -16.242 25.048 Atomic orbital electron populations 1.21593 0.89157 1.03829 1.04804 1.30442 1.08109 1.13258 1.17548 0.83235 1.21169 0.99469 0.79973 0.97815 1.47285 1.50267 1.11259 1.29321 1.15874 0.78942 0.83074 0.81320 1.90934 1.57614 1.54909 1.42052 1.45614 1.56459 1.07544 1.29958 1.21581 0.93849 0.95785 0.87907 1.21762 1.00907 0.91002 1.01512 1.19149 0.94048 0.96779 0.92630 1.22002 1.36369 0.93807 1.12149 0.93303 1.25866 0.93492 1.06550 0.93021 1.70782 1.43004 1.12264 1.28638 0.83538 0.76419 0.74352 0.75955 1.20721 1.21433 1.21448 1.21503 1.00962 0.94835 0.82798 1.30538 1.12894 1.22353 1.04114 0.83809 1.21581 1.02404 1.00172 0.95700 1.08386 0.76037 0.78410 0.77265 1.93585 1.76855 1.76931 1.45828 1.93582 1.26707 1.85900 1.86820 0.89685 0.90607 0.91508 0.86089 0.89000 0.76897 0.91722 0.91813 0.92538 0.92566 0.97147 0.97134 0.92002 0.88344 0.87753 0.90418 0.89424 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.84 37.16 0.33 -0.74 16 2 C -0.58 -4.12 3.39 -26.63 -0.09 -4.21 16 3 H 0.15 0.72 8.14 -51.92 -0.42 0.30 16 4 C 0.14 1.14 5.61 -4.00 -0.02 1.12 16 5 N -0.64 -5.98 2.11 -179.08 -0.38 -6.36 16 6 C 0.71 9.35 8.20 -86.93 -0.71 8.64 16 7 O -0.58 -9.84 15.67 5.28 0.08 -9.75 16 8 N -0.74 -9.53 5.46 -65.23 -0.36 -9.89 16 9 C 0.13 2.16 5.68 -4.04 -0.02 2.13 16 10 C -0.11 -2.11 5.27 -26.72 -0.14 -2.25 16 11 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 12 C -0.61 -16.71 9.11 -34.44 -0.31 -17.02 16 13 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 14 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 15 N -0.91 -27.61 13.65 55.43 0.76 -26.86 16 16 Si 1.07 24.72 29.90 -169.99 -5.08 19.63 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 20 C 0.12 0.83 5.52 -3.76 -0.02 0.81 16 21 C -0.59 -3.77 2.79 -26.39 -0.07 -3.84 16 22 H 0.14 0.81 7.16 -51.93 -0.37 0.44 16 23 C -0.14 -0.75 9.21 37.16 0.34 -0.41 16 24 S 2.42 20.01 4.19 -107.50 -0.45 19.56 16 25 O -0.93 -10.55 17.79 -57.81 -1.03 -11.57 16 26 O -0.93 -9.83 18.01 -57.81 -1.04 -10.87 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.53 8.00 -51.92 -0.42 0.12 16 29 H 0.07 0.55 6.27 -51.93 -0.33 0.23 16 30 H 0.12 1.13 6.90 -51.93 -0.36 0.77 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.39 3.96 5.83 -40.82 -0.24 3.73 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 38 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 39 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.59 5.41 -51.93 -0.28 0.31 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -36.65 361.59 -9.96 -46.61 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.97 Total: -0.66 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.94 Total: -15.29 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.02 Total: -43.10 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.99 Total: -32.20 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 20.01 SS G_CDS: -0.45 Total: 19.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.65 -9.96 -46.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357738974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.853 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds