Wall clock time and date at job start Tue Mar 31 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46632 * 2 1 4 4 S 1.81400 * 109.47006 * 179.97438 * 3 2 1 5 5 O 1.42104 * 110.54165 * 68.37643 * 4 3 2 6 6 O 1.42095 * 110.54545 * 291.62729 * 4 3 2 7 7 N 1.65601 * 104.45210 * 179.97438 * 4 3 2 8 8 C 1.46923 * 120.62697 * 93.06211 * 7 4 3 9 9 C 1.53190 * 108.77534 * 233.62841 * 8 7 4 10 10 C 1.53036 * 109.34389 * 305.38348 * 9 8 7 11 11 C 1.53045 * 109.53613 * 61.31401 * 10 9 8 12 12 C 1.46925 * 120.63191 * 273.08438 * 7 4 3 13 13 H 1.09001 * 109.58668 * 246.15357 * 12 7 4 14 14 C 1.50702 * 109.70240 * 6.51342 * 12 7 4 15 15 O 1.21290 * 120.00090 * 54.38514 * 14 12 7 16 16 N 1.34776 * 119.99827 * 234.38044 * 14 12 7 17 17 C 1.46504 * 119.99912 * 5.58679 * 16 14 12 18 18 C 1.37096 * 119.99990 * 185.57956 * 16 14 12 19 19 H 1.07997 * 120.00381 * 354.50250 * 18 16 14 20 20 C 1.38951 * 119.99857 * 174.49857 * 18 16 14 21 21 N 1.31413 * 120.00262 * 5.07104 * 20 18 16 22 22 Si 1.86805 * 120.00052 * 185.05900 * 20 18 16 23 23 H 1.48509 * 109.46537 * 60.00491 * 22 20 18 24 24 H 1.48492 * 109.47058 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47394 * 300.00616 * 22 20 18 26 26 H 1.09003 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46985 * 299.99578 * 1 2 3 28 28 H 1.08997 * 109.47226 * 59.99594 * 1 2 3 29 29 H 1.09000 * 109.46985 * 240.00422 * 2 1 3 30 30 H 1.08999 * 109.47159 * 119.99861 * 2 1 3 31 31 H 1.08996 * 109.47534 * 60.00248 * 3 2 1 32 32 H 1.08997 * 109.47646 * 300.00148 * 3 2 1 33 33 H 1.08994 * 109.59109 * 353.42332 * 8 7 4 34 34 H 1.09005 * 109.58641 * 113.84588 * 8 7 4 35 35 H 1.09004 * 109.49530 * 65.32346 * 9 8 7 36 36 H 1.09001 * 109.49862 * 185.41076 * 9 8 7 37 37 H 1.08998 * 109.43007 * 301.31301 * 10 9 8 38 38 H 1.08994 * 109.48852 * 181.34991 * 10 9 8 39 39 H 1.09001 * 109.49834 * 178.71921 * 11 10 9 40 40 H 1.09001 * 109.49912 * 58.65271 * 11 10 9 41 41 H 1.08995 * 109.47266 * 5.62461 * 17 16 14 42 42 H 1.09004 * 109.47089 * 125.62027 * 17 16 14 43 43 H 1.09002 * 109.46992 * 245.62341 * 17 16 14 44 44 H 0.96994 * 120.00382 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3531 0.9521 -1.2360 6 8 4.3521 0.9525 1.2380 7 7 4.2671 3.0463 0.0000 8 6 4.5187 3.7550 1.2621 9 6 3.6360 5.0061 1.3095 10 6 3.8828 5.8484 0.0558 11 6 3.5072 5.0382 -1.1871 12 6 4.3885 3.7874 -1.2628 13 1 5.4271 4.0809 -1.4158 14 6 3.9351 2.9185 -2.4075 15 8 2.8360 2.4062 -2.3818 16 7 4.7510 2.7107 -3.4600 17 6 6.1218 3.2269 -3.4373 18 6 4.2981 2.0160 -4.5517 19 1 3.3196 1.5592 -4.5334 20 6 5.0979 1.8997 -5.6820 21 7 6.3255 2.3687 -5.6694 22 14 4.4284 1.0764 -7.2193 23 1 3.2354 1.8193 -7.6990 24 1 5.4715 1.0786 -8.2762 25 1 4.0462 -0.3237 -6.9046 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 4.2752 3.1040 2.1017 34 1 5.5679 4.0459 1.3150 35 1 2.5876 4.7104 1.3481 36 1 3.8821 5.5916 2.1954 37 1 4.9363 6.1234 0.0053 38 1 3.2736 6.7511 0.0985 39 1 3.6616 5.6465 -2.0783 40 1 2.4600 4.7421 -1.1257 41 1 6.3312 3.6591 -2.4588 42 1 6.8200 2.4127 -3.6318 43 1 6.2343 3.9931 -4.2045 44 1 6.8839 2.2872 -6.4582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407962956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:47 Heat of formation + Delta-G solvation = -81.624896 kcal Electronic energy + Delta-G solvation = -27661.779695 eV Core-core repulsion = 23935.505400 eV Total energy + Delta-G solvation = -3726.274295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.42587 -37.40346 -36.32346 -35.28978 -34.73786 -34.40660 -32.21998 -31.74446 -30.75673 -27.34361 -26.53768 -25.02619 -23.97938 -23.20322 -21.72427 -20.15423 -19.69149 -18.00783 -17.14923 -16.85446 -16.43933 -15.77060 -15.66967 -15.00448 -14.52556 -14.41673 -14.23181 -14.05055 -13.78058 -13.50825 -13.43987 -13.15644 -12.69898 -12.42331 -12.35972 -12.06570 -11.81032 -11.68241 -11.55707 -11.38048 -11.25237 -11.15369 -11.11557 -10.91993 -10.78822 -10.76322 -10.58372 -10.55929 -10.34690 -10.23665 -10.02856 -9.95638 -8.96371 -8.61072 -8.28280 -7.79469 -6.18800 -3.72171 0.86948 3.00383 3.22390 3.27002 3.31533 3.83987 4.12779 4.39819 4.61803 4.72202 4.87850 4.94104 4.99358 5.05167 5.18258 5.23628 5.32923 5.40783 5.46713 5.54419 5.61887 5.64060 5.75551 5.80030 5.85930 5.91380 5.93513 6.06577 6.15248 6.18093 6.20501 6.25647 6.37349 6.43041 6.53817 6.58403 6.91018 7.14270 7.47183 7.63065 8.10271 8.53637 9.23210 9.50873 9.99466 10.74748 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.006076 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.530545 B = 4607.033815 C = 5691.371101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.624 4.624 4 S 2.605 3.395 5 O -0.917 6.917 6 O -0.984 6.984 7 N -0.987 5.987 8 C 0.121 3.879 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.118 4.118 12 C 0.136 3.864 13 H 0.093 0.907 14 C 0.437 3.563 15 O -0.608 6.608 16 N -0.413 5.413 17 C 0.107 3.893 18 C -0.282 4.282 19 H 0.106 0.894 20 C 0.023 3.977 21 N -0.888 5.888 22 Si 0.933 3.067 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.170 0.830 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 5.308 11.942 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.753 4.753 4 S 2.700 3.300 5 O -0.906 6.906 6 O -0.975 6.975 7 N -0.825 5.825 8 C -0.004 4.004 9 C -0.174 4.174 10 C -0.153 4.153 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.111 0.889 14 C 0.225 3.775 15 O -0.499 6.499 16 N -0.127 5.127 17 C -0.036 4.036 18 C -0.410 4.410 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.530 5.530 22 Si 0.759 3.241 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.187 0.813 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.317 4.332 11.769 13.263 hybrid contribution -0.618 0.113 -0.749 0.977 sum -4.934 4.445 11.020 12.867 Atomic orbital electron populations 1.21668 0.94461 1.01525 1.02149 1.21163 0.98178 0.92994 1.02685 1.30855 1.26837 1.05212 1.12440 1.05201 0.78075 0.72823 0.73857 1.93707 1.77105 1.77035 1.42787 1.93504 1.78708 1.78508 1.46761 1.57736 1.84553 1.29396 1.10767 1.21376 0.99877 0.94035 0.85142 1.21942 1.00459 0.96745 0.98300 1.21475 1.01625 0.97785 0.94371 1.21768 1.00568 0.95318 0.98126 1.21127 1.01190 0.92481 0.82512 0.88919 1.19255 0.86662 0.86520 0.85065 1.90306 1.23115 1.56017 1.80415 1.43385 1.10018 1.44610 1.14672 1.22003 0.84239 1.00800 0.96576 1.19775 1.02857 1.28536 0.89829 0.87611 1.25342 0.95365 0.97636 0.99495 1.70150 1.06899 1.46265 1.29663 0.85893 0.78193 0.79692 0.80273 1.19955 1.20977 1.19863 0.92577 0.92882 0.91977 0.90280 0.91735 0.87305 0.81255 0.89391 0.91216 0.91606 0.91055 0.91788 0.91830 0.90762 0.90756 0.95673 0.90051 0.91737 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.11 -1.70 5.94 -26.73 -0.16 -1.86 16 3 C -0.62 -10.20 5.74 37.16 0.21 -9.99 16 4 S 2.60 50.17 4.74 -107.50 -0.51 49.66 16 5 O -0.92 -22.24 14.02 -66.80 -0.94 -23.18 16 6 O -0.98 -19.58 16.62 -57.54 -0.96 -20.54 16 7 N -0.99 -16.71 3.22 -107.70 -0.35 -17.05 16 8 C 0.12 1.57 6.33 -3.71 -0.02 1.55 16 9 C -0.14 -1.43 6.08 -26.61 -0.16 -1.59 16 10 C -0.11 -1.29 5.89 -26.69 -0.16 -1.45 16 11 C -0.12 -1.76 5.34 -26.61 -0.14 -1.90 16 12 C 0.14 2.47 2.99 -68.75 -0.21 2.27 16 13 H 0.09 1.63 5.09 -51.93 -0.26 1.37 16 14 C 0.44 10.27 3.80 -10.98 -0.04 10.22 16 15 O -0.61 -15.06 11.40 -17.71 -0.20 -15.26 16 16 N -0.41 -10.70 2.99 -122.19 -0.37 -11.07 16 17 C 0.11 2.50 8.75 59.85 0.52 3.02 16 18 C -0.28 -7.92 9.57 -14.93 -0.14 -8.07 16 19 H 0.11 3.09 7.18 -52.49 -0.38 2.71 16 20 C 0.02 0.61 5.46 -17.47 -0.10 0.52 16 21 N -0.89 -23.58 9.44 55.50 0.52 -23.05 16 22 Si 0.93 21.14 29.56 -169.99 -5.02 16.11 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.17 3.12 5.43 -51.93 -0.28 2.83 16 33 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 41 H 0.03 0.50 5.01 -51.93 -0.26 0.24 16 42 H 0.08 2.08 6.86 -51.93 -0.36 1.72 16 43 H 0.06 1.52 7.22 -51.93 -0.38 1.15 16 44 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -32.82 346.98 -9.52 -42.34 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.91 Total: 5.48 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.02 Total: -8.68 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.19 Total: -51.17 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -2.09 Total: -58.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 50.17 SS G_CDS: -0.51 Total: 49.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.82 -9.52 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407962956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.285 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds