Wall clock time and date at job start Tue Mar 31 2020 04:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 S 1.81405 * 109.46901 * 294.99764 * 4 2 1 6 6 O 1.42101 * 110.54193 * 291.62561 * 5 4 2 7 7 O 1.42102 * 110.54136 * 68.37249 * 5 4 2 8 8 N 1.65593 * 104.44835 * 179.97438 * 5 4 2 9 9 C 1.46920 * 120.63465 * 269.71904 * 8 5 4 10 10 C 1.52762 * 109.01045 * 233.58794 * 9 8 5 11 11 C 1.53040 * 109.38052 * 305.58601 * 10 9 8 12 12 N 1.46505 * 109.44776 * 181.25560 * 11 10 9 13 13 C 1.34777 * 120.00008 * 84.93728 * 12 11 10 14 14 O 1.21684 * 119.99971 * 0.02562 * 13 12 11 15 15 C 1.46377 * 119.99909 * 179.97438 * 13 12 11 16 16 H 1.07997 * 119.99641 * 0.02562 * 15 13 12 17 17 C 1.40047 * 120.00172 * 179.97438 * 15 13 12 18 18 N 1.30673 * 119.99932 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00259 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47145 * 89.99849 * 19 17 15 21 21 H 1.48502 * 109.47169 * 210.00301 * 19 17 15 22 22 H 1.48499 * 109.47043 * 330.00193 * 19 17 15 23 23 C 1.53037 * 109.53826 * 61.24022 * 11 10 9 24 24 C 1.46934 * 120.62943 * 90.00017 * 8 5 4 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 33 33 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 34 34 H 1.09001 * 109.58646 * 353.42283 * 9 8 5 35 35 H 1.09005 * 109.58795 * 113.84502 * 9 8 5 36 36 H 1.09000 * 109.56722 * 185.55470 * 10 9 8 37 37 H 1.08994 * 109.36539 * 65.49692 * 10 9 8 38 38 H 1.09002 * 109.46134 * 301.21535 * 11 10 9 39 39 H 0.97006 * 120.00043 * 264.93612 * 12 11 10 40 40 H 0.96999 * 120.00141 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.49780 * 178.67887 * 23 11 10 42 42 H 1.08995 * 109.52341 * 58.60200 * 23 11 10 43 43 H 1.08992 * 109.58791 * 246.15762 * 24 8 5 44 44 H 1.09002 * 109.58209 * 6.43861 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5602 -2.4691 -1.1767 6 8 2.2660 -3.1373 -0.1400 7 8 0.1520 -2.6055 -1.3100 8 7 2.1672 -3.1225 -2.5719 9 6 1.3589 -3.1517 -3.7984 10 6 1.3073 -4.5842 -4.3264 11 6 2.7329 -5.1132 -4.5000 12 7 2.6856 -6.4763 -5.0347 13 6 2.5864 -6.6758 -6.3639 14 8 2.5365 -5.7236 -7.1200 15 6 2.5397 -8.0378 -6.8981 16 1 2.5845 -8.8828 -6.2271 17 6 2.4361 -8.2451 -8.2793 18 7 2.3815 -7.2226 -9.0911 19 14 2.3758 -9.9832 -8.9610 20 1 0.9637 -10.4361 -9.0379 21 1 2.9770 -10.0035 -10.3187 22 1 3.1390 -10.8918 -8.0681 23 6 3.4443 -5.1212 -3.1451 24 6 3.5222 -3.6898 -2.6052 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 3.1263 -0.6442 -1.2952 34 1 0.3481 -2.8083 -3.5782 35 1 1.8114 -2.5043 -4.5497 36 1 0.7936 -4.6007 -5.2877 37 1 0.7703 -5.2123 -3.6156 38 1 3.2770 -4.4704 -5.1921 39 1 2.7258 -7.2354 -4.4320 40 1 2.3100 -7.3662 -10.0478 41 1 4.4516 -5.5200 -3.2654 42 1 2.8877 -5.7443 -2.4451 43 1 4.1546 -3.0872 -3.2571 44 1 3.9393 -3.6990 -1.5982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408319249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:36 Heat of formation + Delta-G solvation = -126.300856 kcal Electronic energy + Delta-G solvation = -25528.823334 eV Core-core repulsion = 21800.611744 eV Total energy + Delta-G solvation = -3728.211590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.77607 -37.30386 -36.77954 -36.71854 -35.96619 -33.54078 -32.32744 -30.93835 -29.99893 -28.19040 -27.57999 -26.26715 -23.64363 -23.18772 -21.00402 -20.42261 -19.53218 -18.83602 -17.89972 -17.03426 -16.77953 -16.25218 -15.35119 -15.28234 -14.90798 -14.53121 -14.42069 -14.22120 -14.08096 -13.79378 -13.60259 -13.06152 -12.87794 -12.63479 -12.57887 -12.50043 -12.33085 -12.20439 -12.02772 -11.86080 -11.73137 -11.44933 -11.33093 -11.26702 -11.06793 -11.02008 -10.94201 -10.65603 -10.47650 -10.36976 -10.23022 -10.02465 -9.04414 -8.84811 -7.60212 -7.49284 -6.18130 -4.63359 0.09906 2.51920 3.14463 3.21448 3.24680 3.67830 3.93331 4.09598 4.10869 4.36529 4.51727 4.58579 4.61567 4.79874 4.87294 5.05172 5.15445 5.19132 5.24788 5.26746 5.36783 5.42433 5.46603 5.53126 5.59424 5.65683 5.74674 5.79083 5.85980 5.88827 5.90960 5.96156 6.11152 6.21983 6.42420 6.46134 6.76066 6.85227 7.44044 7.94921 8.12952 8.34774 9.03387 9.55446 10.60603 10.79548 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037743 B = 0.002650 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.678030 B =10564.482844 C =10686.968368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.629 4.629 5 S 2.607 3.393 6 O -0.957 6.957 7 O -0.951 6.951 8 N -0.998 5.998 9 C 0.121 3.879 10 C -0.139 4.139 11 C 0.158 3.842 12 N -0.764 5.764 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.137 4.137 24 C 0.122 3.878 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.380 0.620 40 H 0.268 0.732 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 14.323 16.805 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.104 4.104 3 C -0.198 4.198 4 C -0.758 4.758 5 S 2.701 3.299 6 O -0.948 6.948 7 O -0.941 6.941 8 N -0.837 5.837 9 C -0.004 4.004 10 C -0.180 4.180 11 C 0.052 3.948 12 N -0.417 5.417 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.177 4.177 24 C -0.004 4.004 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.211 0.789 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.147 14.637 16.678 22.190 hybrid contribution 0.344 -0.690 -0.496 0.917 sum 0.198 13.947 16.182 21.364 Atomic orbital electron populations 1.22322 0.93866 1.04349 1.03348 1.20843 0.96691 0.97986 0.94916 1.21794 1.01203 0.94462 1.02360 1.30803 1.11999 1.25877 1.07100 1.05115 0.74517 0.76977 0.73307 1.93577 1.74800 1.71072 1.55308 1.93577 1.29423 1.85686 1.85406 1.57678 1.25160 1.73460 1.27409 1.21440 0.94915 0.99045 0.85040 1.22211 0.99384 0.94502 1.01865 1.20393 0.94117 0.87402 0.92928 1.46202 1.81968 1.04834 1.08729 1.18192 0.76171 0.90584 0.79041 1.90585 1.54953 1.43969 1.56891 1.20903 1.53954 0.91303 0.92132 0.91517 1.25697 0.92647 0.97859 0.96980 1.70018 1.35349 1.30848 1.03535 0.86391 0.78915 0.83061 0.78480 1.19771 1.20504 1.18954 1.22133 1.01806 0.96024 0.97704 1.21444 0.81912 0.94749 1.02253 0.91400 0.90642 0.91296 0.89902 0.92166 0.91996 0.92280 0.84885 0.85058 0.89123 0.91238 0.89836 0.92001 0.90542 0.78906 0.92173 0.90352 0.91344 0.91205 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.88 37.16 0.33 -1.14 16 2 C -0.08 -0.64 2.92 -90.62 -0.26 -0.91 16 3 C -0.14 -0.85 9.19 37.16 0.34 -0.51 16 4 C -0.63 -4.80 5.62 37.16 0.21 -4.59 16 5 S 2.61 29.80 5.11 -107.50 -0.55 29.25 16 6 O -0.96 -13.42 16.59 -57.54 -0.95 -14.37 16 7 O -0.95 -13.34 14.33 -57.54 -0.82 -14.16 16 8 N -1.00 -11.99 3.23 -113.77 -0.37 -12.36 16 9 C 0.12 1.61 6.40 -3.94 -0.03 1.58 16 10 C -0.14 -2.38 5.63 -26.83 -0.15 -2.54 16 11 C 0.16 2.89 2.42 -67.89 -0.16 2.72 16 12 N -0.76 -16.64 5.07 -55.17 -0.28 -16.92 16 13 C 0.56 15.46 7.71 -12.99 -0.10 15.36 16 14 O -0.58 -18.23 14.68 5.20 0.08 -18.16 16 15 C -0.55 -15.30 9.54 -35.63 -0.34 -15.64 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 18 N -0.77 -22.87 11.83 55.55 0.66 -22.21 16 19 Si 0.91 20.12 29.56 -169.99 -5.02 15.09 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 C -0.14 -1.93 5.55 -26.61 -0.15 -2.08 16 24 C 0.12 1.41 6.43 -3.71 -0.02 1.39 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.74 5.61 -51.93 -0.29 0.45 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.12 6.85 -51.93 -0.36 0.77 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 39 H 0.38 7.41 8.58 -40.82 -0.35 7.06 16 40 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.94 6.86 -51.93 -0.36 0.59 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -36.68 363.12 -9.44 -46.11 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.21 Total: 6.25 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.43 Total: -4.00 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.01 Total: -51.49 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -1.70 Total: -46.69 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 29.80 SS G_CDS: -0.55 Total: 29.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.68 -9.44 -46.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408319249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.188 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds