Wall clock time and date at job start Tue Mar 31 2020 05:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.51099 * 2 1 4 4 C 1.53296 * 109.51464 * 120.09840 * 2 1 3 5 5 N 1.47150 * 108.38576 * 67.67060 * 4 2 1 6 6 S 1.65593 * 120.98529 * 230.51356 * 5 4 2 7 7 O 1.42098 * 106.40370 * 203.53834 * 6 5 4 8 8 O 1.42101 * 106.40540 * 336.46292 * 6 5 4 9 9 N 1.65607 * 107.21764 * 90.00386 * 6 5 4 10 10 C 1.46505 * 119.99543 * 269.99997 * 9 6 5 11 11 C 1.46501 * 120.00295 * 90.00047 * 9 6 5 12 12 C 1.50695 * 109.47327 * 94.99746 * 11 9 6 13 13 H 1.08002 * 119.99965 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99886 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99949 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46841 * 89.99837 * 16 14 12 18 18 H 1.48499 * 109.47051 * 209.99581 * 16 14 12 19 19 H 1.48499 * 109.47085 * 329.99993 * 16 14 12 20 20 C 1.47158 * 118.03117 * 50.53704 * 5 4 2 21 21 C 1.53290 * 108.38592 * 309.46485 * 20 5 4 22 22 H 1.08998 * 109.55347 * 292.35430 * 21 20 5 23 23 C 1.53000 * 109.51514 * 172.22700 * 21 20 5 24 24 C 1.52998 * 117.49980 * 249.00200 * 23 21 20 25 25 C 1.52993 * 117.50399 * 180.33945 * 23 21 20 26 26 O 1.42953 * 109.55563 * 239.86950 * 2 1 3 27 27 H 1.09002 * 109.47461 * 299.89998 * 1 2 3 28 28 H 1.08992 * 109.47350 * 59.90254 * 1 2 3 29 29 H 1.09001 * 109.46890 * 179.90394 * 1 2 3 30 30 H 1.08993 * 109.68290 * 187.40114 * 4 2 1 31 31 H 1.09005 * 109.68251 * 307.94997 * 4 2 1 32 32 H 1.08995 * 109.47005 * 90.00339 * 10 9 6 33 33 H 1.08997 * 109.46844 * 209.99709 * 10 9 6 34 34 H 1.08999 * 109.47262 * 329.99426 * 10 9 6 35 35 H 1.08995 * 109.47089 * 215.00177 * 11 9 6 36 36 H 1.09000 * 109.47024 * 334.99855 * 11 9 6 37 37 H 0.97005 * 120.00116 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.68099 * 189.73981 * 20 5 4 39 39 H 1.09002 * 109.71016 * 69.21056 * 20 5 4 40 40 H 1.09006 * 115.54908 * 34.66952 * 23 21 20 41 41 H 1.08996 * 117.49798 * 359.97438 * 24 23 21 42 42 H 1.08997 * 117.49761 * 145.02143 * 24 23 21 43 43 H 1.08997 * 117.50629 * 214.97915 * 25 23 21 44 44 H 1.09008 * 117.49820 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 1.2501 5 7 1.6970 -2.1504 1.1341 6 16 0.9300 -2.9450 2.3680 7 8 1.2324 -4.3240 2.2065 8 8 1.2207 -2.2193 3.5547 9 7 -0.6989 -2.7906 2.1127 10 6 -1.4254 -1.6538 2.6841 11 6 -1.4135 -3.7906 1.3155 12 6 -2.0192 -4.8233 2.2307 13 1 -1.8856 -4.7426 3.2994 14 6 -2.7448 -5.8706 1.7039 15 7 -3.2738 -6.7716 2.5026 16 14 -2.9765 -6.0099 -0.1445 17 1 -1.8688 -6.8120 -0.7231 18 1 -4.2723 -6.6756 -0.4322 19 1 -2.9724 -4.6528 -0.7475 20 6 2.0543 -2.8493 -0.1106 21 6 1.5417 -2.0213 -1.2943 22 1 0.4517 -2.0293 -1.3004 23 6 2.0644 -2.6202 -2.6016 24 6 3.1012 -1.8119 -3.3842 25 6 1.6665 -1.9261 -3.9056 26 8 2.0085 -0.6762 -1.1651 27 1 -0.3634 0.5123 0.8909 28 1 -0.3633 0.5153 -0.8890 29 1 -0.3633 -1.0277 -0.0017 30 1 3.1239 -0.6133 1.3216 31 1 1.5698 -0.3037 2.1378 32 1 -1.4205 -0.8261 1.9751 33 1 -2.4541 -1.9477 2.8923 34 1 -0.9421 -1.3421 3.6100 35 1 -2.2036 -3.3031 0.7445 36 1 -0.7170 -4.2753 0.6314 37 1 -3.7840 -7.5087 2.1320 38 1 1.5901 -3.8355 -0.1240 39 1 3.1374 -2.9526 -0.1764 40 1 2.1565 -3.7063 -2.6173 41 1 3.4105 -0.8532 -2.9681 42 1 3.8751 -2.3661 -3.9152 43 1 1.4973 -2.5553 -4.7795 44 1 1.0319 -1.0428 -3.8324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408333530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:31 Heat of formation + Delta-G solvation = -79.717699 kcal Electronic energy + Delta-G solvation = -27387.871795 eV Core-core repulsion = 23661.680202 eV Total energy + Delta-G solvation = -3726.191593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04162 -37.02140 -36.74428 -35.70264 -35.29815 -34.68741 -32.44259 -32.15807 -29.06213 -28.43781 -26.05878 -25.22632 -24.14226 -22.45259 -21.97913 -21.44310 -19.53520 -18.65836 -17.55655 -17.15831 -16.82920 -16.67967 -16.00913 -15.82433 -15.11144 -14.86446 -14.69134 -14.35444 -14.26215 -13.80843 -13.46756 -13.30102 -12.66817 -12.55111 -12.42178 -12.26945 -12.11387 -11.91568 -11.75522 -11.63303 -11.45639 -11.41772 -11.38537 -11.36335 -11.27971 -10.75511 -10.71212 -10.59254 -10.45662 -10.34981 -10.12311 -9.91886 -9.58851 -8.73612 -8.63166 -8.16372 -6.11869 -4.11585 0.99566 3.21787 3.25867 3.27881 3.32297 3.47677 3.77063 3.93792 4.34145 4.42392 4.61720 4.74478 4.81211 4.85043 4.90903 4.97974 5.09500 5.17165 5.23858 5.25864 5.32466 5.38940 5.49174 5.58782 5.61273 5.66977 5.74400 5.79636 5.85397 5.89741 6.03815 6.07015 6.13294 6.19103 6.21135 6.38007 6.51594 6.66873 7.01623 7.09743 7.32680 7.53305 8.44902 8.93025 9.46781 11.01680 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.006160 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.108894 B = 4544.017230 C = 5723.746101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 H 0.110 0.890 4 C 0.095 3.905 5 N -1.013 6.013 6 S 2.779 3.221 7 O -0.957 6.957 8 O -0.989 6.989 9 N -0.989 5.989 10 C 0.091 3.909 11 C 0.229 3.771 12 C -0.532 4.532 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.870 3.130 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.099 3.901 21 C 0.104 3.896 22 H 0.074 0.926 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.173 4.173 26 O -0.368 6.368 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 14.908 -10.372 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.018 3.982 3 H 0.128 0.872 4 C -0.031 4.031 5 N -0.852 5.852 6 S 2.788 3.212 7 O -0.941 6.941 8 O -0.973 6.973 9 N -0.831 5.831 10 C -0.056 4.056 11 C 0.106 3.894 12 C -0.571 4.571 13 H 0.096 0.904 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.697 3.303 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.027 4.027 21 C 0.045 3.955 22 H 0.092 0.908 23 C -0.174 4.174 24 C -0.200 4.200 25 C -0.210 4.210 26 O -0.287 6.287 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.217 14.353 -9.758 20.140 hybrid contribution -0.667 -0.231 -0.986 1.213 sum 9.550 14.122 -10.744 20.151 Atomic orbital electron populations 1.22553 0.95838 1.03788 1.02804 1.22529 0.94142 0.96152 0.85340 0.87235 1.22024 1.01471 0.80640 0.98960 1.58622 1.74653 1.19518 1.32373 1.02144 0.72888 0.73207 0.72929 1.93632 1.83633 1.31012 1.85783 1.93526 1.84580 1.74751 1.44415 1.57456 1.25074 1.34035 1.66524 1.21476 0.99499 0.87246 0.97355 1.19414 0.92342 0.86566 0.91090 1.21358 1.32701 1.07629 0.95435 0.90431 1.24869 0.95045 0.95217 0.97777 1.69895 1.34958 1.13413 1.34927 0.86947 0.78178 0.78918 0.86260 1.19736 1.20916 1.18933 1.21997 1.01721 0.96042 0.82974 1.21863 0.98343 0.82492 0.92760 0.90834 1.22268 1.05611 0.98745 0.90802 1.22849 0.92024 1.02471 1.02637 1.22923 0.98742 1.02825 0.96492 1.87932 1.72336 1.25183 1.43207 0.91109 0.91733 0.90993 0.90625 0.88659 0.93988 0.90098 0.91352 0.94949 0.95640 0.92483 0.88252 0.90410 0.86304 0.87696 0.89235 0.88928 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 8.00 37.16 0.30 -1.70 16 2 C 0.08 0.79 3.92 -26.58 -0.10 0.69 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.10 1.12 5.95 -3.53 -0.02 1.09 16 5 N -1.01 -14.93 2.92 -113.06 -0.33 -15.26 16 6 S 2.78 53.87 6.07 -107.50 -0.65 53.22 16 7 O -0.96 -22.37 15.91 -57.17 -0.91 -23.28 16 8 O -0.99 -20.15 15.54 -57.17 -0.89 -21.04 16 9 N -0.99 -19.33 3.23 -123.06 -0.40 -19.73 16 10 C 0.09 1.45 10.68 59.85 0.64 2.09 16 11 C 0.23 5.21 4.15 -5.20 -0.02 5.19 16 12 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 13 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -27.25 13.96 55.43 0.77 -26.47 16 16 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 20 C 0.10 1.35 5.84 -3.53 -0.02 1.33 16 21 C 0.10 1.27 2.75 -26.58 -0.07 1.20 16 22 H 0.07 0.96 6.25 -51.93 -0.32 0.63 16 23 C -0.16 -1.67 5.71 -90.62 -0.52 -2.19 16 24 C -0.16 -1.56 9.88 -26.70 -0.26 -1.83 16 25 C -0.17 -1.67 10.19 -26.70 -0.27 -1.95 16 26 O -0.37 -4.25 8.58 -35.23 -0.30 -4.55 16 27 H 0.07 0.65 7.12 -51.93 -0.37 0.28 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.90 5.86 -51.93 -0.30 0.59 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.08 7.24 -51.93 -0.38 0.70 16 32 H 0.04 0.53 5.87 -51.93 -0.30 0.23 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 35 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 36 H 0.03 0.58 7.04 -51.93 -0.37 0.21 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.10 1.48 7.25 -51.93 -0.38 1.10 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.12 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.10 1.07 7.07 -51.93 -0.37 0.71 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -33.86 354.34 -9.75 -43.61 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.91 Total: 1.49 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -0.80 Total: -9.32 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.05 Total: -61.46 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.10 Total: -48.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -0.65 Total: 53.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.86 -9.75 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408333530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.106 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds