Wall clock time and date at job start Tue Mar 31 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51598 * 2 1 4 4 C 1.53300 * 109.51430 * 120.10123 * 2 1 3 5 5 N 1.47149 * 108.38388 * 172.23035 * 4 2 1 6 6 S 1.65595 * 120.98138 * 129.44567 * 5 4 2 7 7 O 1.42102 * 106.40430 * 336.45164 * 6 5 4 8 8 O 1.42106 * 106.40003 * 203.53260 * 6 5 4 9 9 N 1.65601 * 107.22339 * 89.99611 * 6 5 4 10 10 C 1.46501 * 119.99800 * 269.99884 * 9 6 5 11 11 C 1.46493 * 120.00092 * 89.99385 * 9 6 5 12 12 C 1.50706 * 109.47128 * 95.00402 * 11 9 6 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.47152 * 118.03575 * 309.71034 * 5 4 2 21 21 C 1.52878 * 108.60805 * 50.23117 * 20 5 4 22 22 H 1.08996 * 109.40868 * 67.84097 * 21 20 5 23 23 C 1.52995 * 109.58607 * 187.92595 * 21 20 5 24 24 C 1.53002 * 117.49659 * 248.63281 * 23 21 20 25 25 C 1.52997 * 117.50308 * 179.97438 * 23 21 20 26 26 O 1.42962 * 109.51364 * 239.84579 * 2 1 3 27 27 H 1.08991 * 109.47272 * 299.89996 * 1 2 3 28 28 H 1.09004 * 109.47092 * 59.90202 * 1 2 3 29 29 H 1.08996 * 109.47101 * 179.89632 * 1 2 3 30 30 H 1.08999 * 109.68030 * 52.49806 * 4 2 1 31 31 H 1.09007 * 109.70673 * 291.96691 * 4 2 1 32 32 H 1.09002 * 109.47261 * 270.00037 * 10 9 6 33 33 H 1.09004 * 109.46860 * 29.99391 * 10 9 6 34 34 H 1.08999 * 109.46818 * 149.99558 * 10 9 6 35 35 H 1.09001 * 109.47786 * 335.00675 * 11 9 6 36 36 H 1.09006 * 109.47401 * 215.00260 * 11 9 6 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 38 38 H 1.08995 * 109.68431 * 170.01630 * 20 5 4 39 39 H 1.09004 * 109.68307 * 290.56578 * 20 5 4 40 40 H 1.09002 * 115.55216 * 34.29053 * 23 21 20 41 41 H 1.09000 * 117.50050 * 359.97438 * 24 23 21 42 42 H 1.09000 * 117.50154 * 145.01714 * 24 23 21 43 43 H 1.08997 * 117.50248 * 214.98098 * 25 23 21 44 44 H 1.09010 * 117.49710 * 359.97137 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2501 5 7 3.5012 -0.8756 1.1340 6 16 4.5064 -0.4170 2.3674 7 8 3.7948 0.5511 3.1263 8 8 5.7746 -0.1639 1.7784 9 7 4.7033 -1.7322 3.3543 10 6 3.7854 -1.9511 4.4749 11 6 5.7953 -2.6768 3.1066 12 6 6.9809 -2.3094 3.9613 13 1 6.9265 -1.4572 4.6225 14 6 8.1350 -3.0612 3.8991 15 7 8.2014 -4.0986 3.0936 16 14 9.6048 -2.6053 4.9580 17 1 10.4762 -1.6600 4.2148 18 1 9.1322 -1.9625 6.2105 19 1 10.3745 -3.8310 5.2906 20 6 4.0411 -1.4406 -0.1129 21 6 3.4313 -0.6861 -1.2945 22 1 3.8029 0.3386 -1.3006 23 6 3.8212 -1.3789 -2.6017 24 6 4.7823 -0.6387 -3.5341 25 6 3.3032 -0.7696 -3.9060 26 8 2.0075 -0.6769 -1.1652 27 1 -0.3633 0.5122 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0019 30 1 1.5758 -1.7073 1.3216 31 1 1.8030 -0.1394 2.1381 32 1 4.1730 -1.4544 5.3644 33 1 2.8061 -1.5414 4.2277 34 1 3.6943 -3.0203 4.6663 35 1 6.0792 -2.6365 2.0550 36 1 5.4665 -3.6858 3.3558 37 1 7.4383 -4.3351 2.5434 38 1 5.1252 -1.3288 -0.1274 39 1 3.7795 -2.4966 -0.1809 40 1 3.9049 -2.4645 -2.5516 41 1 5.1364 0.3420 -3.2165 42 1 5.4978 -1.2373 -4.0978 43 1 3.0462 -1.4544 -4.7142 44 1 2.6842 0.1247 -3.8328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408333531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:33 Heat of formation + Delta-G solvation = -92.204912 kcal Electronic energy + Delta-G solvation = -26570.222916 eV Core-core repulsion = 22843.489837 eV Total energy + Delta-G solvation = -3726.733079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79155 -37.11669 -36.77765 -35.70728 -35.31604 -34.73748 -32.73135 -32.64778 -28.76279 -27.52551 -26.07794 -24.84925 -23.70449 -22.49501 -22.41568 -21.17156 -20.68581 -18.63947 -17.71448 -17.00645 -16.79281 -16.68153 -16.19116 -15.69839 -15.19354 -15.01302 -14.33687 -14.24630 -13.92327 -13.70367 -13.34700 -13.18848 -12.86434 -12.61630 -12.50773 -12.34817 -12.22078 -11.91383 -11.73913 -11.69463 -11.63998 -11.33554 -11.30301 -11.21671 -11.14095 -10.80943 -10.66144 -10.54923 -10.51998 -10.21306 -10.13989 -10.10389 -9.37522 -8.80028 -8.40779 -7.98506 -6.42493 -4.14259 0.99425 3.19514 3.30563 3.44666 3.47851 3.63126 3.87791 3.95273 4.35907 4.52151 4.65134 4.68746 4.79564 4.84130 4.88972 4.96829 5.06689 5.08111 5.27064 5.30751 5.33208 5.40460 5.43529 5.52540 5.54016 5.60943 5.72157 5.76226 5.84923 5.92984 5.94047 5.99265 6.04857 6.09804 6.21281 6.34596 6.52853 6.83921 7.11132 7.12089 7.39017 7.97108 8.41346 8.76660 9.54660 10.95537 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.004515 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.629048 B = 6200.562978 C = 7348.406144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.062 0.938 4 C 0.089 3.911 5 N -1.015 6.015 6 S 2.780 3.220 7 O -0.991 6.991 8 O -0.958 6.958 9 N -0.993 5.993 10 C 0.109 3.891 11 C 0.248 3.752 12 C -0.608 4.608 13 H 0.054 0.946 14 C 0.022 3.978 15 N -0.909 5.909 16 Si 1.072 2.928 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.283 1.283 20 C 0.094 3.906 21 C 0.114 3.886 22 H 0.062 0.938 23 C -0.150 4.150 24 C -0.172 4.172 25 C -0.164 4.164 26 O -0.369 6.369 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 5.231 -9.641 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.080 0.920 4 C -0.037 4.037 5 N -0.854 5.854 6 S 2.789 3.211 7 O -0.976 6.976 8 O -0.942 6.942 9 N -0.835 5.835 10 C -0.037 4.037 11 C 0.126 3.874 12 C -0.647 4.647 13 H 0.072 0.928 14 C -0.183 4.183 15 N -0.545 5.545 16 Si 0.900 3.100 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.209 1.209 20 C -0.032 4.032 21 C 0.055 3.945 22 H 0.080 0.920 23 C -0.168 4.168 24 C -0.209 4.209 25 C -0.201 4.201 26 O -0.289 6.289 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.138 5.543 -9.235 16.989 hybrid contribution -1.556 0.078 -0.133 1.564 sum -14.694 5.621 -9.369 18.311 Atomic orbital electron populations 1.21726 0.92323 1.03193 1.02729 1.22398 0.95247 0.95337 0.85270 0.92048 1.22120 0.80257 1.01681 0.99604 1.58616 1.16686 1.79915 1.30133 1.02082 0.72807 0.73537 0.72641 1.93524 1.75073 1.58384 1.70570 1.93619 1.39336 1.83798 1.77447 1.57553 1.39740 1.45785 1.40374 1.21210 0.90797 1.02025 0.89686 1.19129 0.83852 0.87802 0.96650 1.22316 0.99465 1.16315 1.26646 0.92753 1.25812 1.00763 0.93642 0.98043 1.70801 1.33765 1.26083 1.23882 0.83506 0.75135 0.75946 0.75436 1.21183 1.21406 1.20885 1.21979 1.00175 0.98081 0.82915 1.21797 0.81496 0.98324 0.92863 0.91961 1.22112 1.05333 0.99521 0.89870 1.23060 0.93099 1.02122 1.02590 1.22826 0.96526 1.03173 0.97560 1.87932 1.20553 1.77496 1.42872 0.90730 0.91563 0.91521 0.90794 0.88330 0.92948 0.92988 0.91515 0.95670 0.95769 0.92336 0.87630 0.90671 0.86848 0.88513 0.88120 0.88709 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 37.16 0.36 -0.87 16 2 C 0.08 0.90 3.40 -26.58 -0.09 0.81 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.09 1.16 6.00 -3.53 -0.02 1.13 16 5 N -1.02 -16.18 3.40 -113.30 -0.39 -16.56 16 6 S 2.78 56.36 6.07 -107.50 -0.65 55.71 16 7 O -0.99 -20.69 15.83 -57.17 -0.91 -21.60 16 8 O -0.96 -22.99 15.72 -57.17 -0.90 -23.89 16 9 N -0.99 -20.99 3.23 -123.05 -0.40 -21.38 16 10 C 0.11 1.92 10.33 59.85 0.62 2.53 16 11 C 0.25 6.20 4.43 -5.19 -0.02 6.18 16 12 C -0.61 -17.35 9.38 -34.44 -0.32 -17.67 16 13 H 0.05 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 15 N -0.91 -27.15 13.65 55.43 0.76 -26.39 16 16 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.09 1.41 5.96 -3.75 -0.02 1.39 16 21 C 0.11 1.49 2.96 -26.80 -0.08 1.41 16 22 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 23 C -0.15 -1.67 5.39 -90.62 -0.49 -2.16 16 24 C -0.17 -1.70 10.18 -26.69 -0.27 -1.97 16 25 C -0.16 -1.57 10.16 -26.70 -0.27 -1.84 16 26 O -0.37 -4.76 9.94 -35.23 -0.35 -5.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.24 6.95 -51.93 -0.36 0.88 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.03 0.66 7.48 -51.93 -0.39 0.27 16 36 H 0.02 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 38 H 0.11 1.73 6.94 -51.93 -0.36 1.37 16 39 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 40 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -34.19 367.70 -10.40 -44.59 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.31 Total: -0.96 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.71 Total: -10.54 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.03 Total: -64.34 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.15 Total: -50.60 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Atomic # 16 Polarization: 56.36 SS G_CDS: -0.65 Total: 55.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.19 -10.40 -44.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408333531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.618 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds