Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.51104 * 2 1 4 4 C 1.53296 * 109.51259 * 239.90403 * 2 1 3 5 5 N 1.47160 * 108.37956 * 292.37475 * 4 2 1 6 6 S 1.65593 * 120.97956 * 129.44582 * 5 4 2 7 7 O 1.42102 * 106.40528 * 336.45471 * 6 5 4 8 8 O 1.42105 * 106.40284 * 203.53889 * 6 5 4 9 9 N 1.65597 * 107.22229 * 89.99699 * 6 5 4 10 10 C 1.46494 * 120.00081 * 270.00239 * 9 6 5 11 11 C 1.46507 * 120.00105 * 89.99477 * 9 6 5 12 12 C 1.50697 * 109.47006 * 265.00569 * 11 9 6 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 9 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.47153 * 118.03398 * 309.71207 * 5 4 2 21 21 C 1.52878 * 108.60576 * 50.23317 * 20 5 4 22 22 H 1.09005 * 109.40960 * 67.83793 * 21 20 5 23 23 C 1.52995 * 109.58303 * 187.91752 * 21 20 5 24 24 C 1.52999 * 117.50404 * 248.50240 * 23 21 20 25 25 C 1.52999 * 60.00070 * 252.50739 * 24 23 21 26 26 O 1.42958 * 109.51452 * 120.14962 * 2 1 3 27 27 H 1.09002 * 109.47009 * 180.10112 * 1 2 3 28 28 H 1.09002 * 109.47081 * 300.09668 * 1 2 3 29 29 H 1.08997 * 109.47289 * 60.09873 * 1 2 3 30 30 H 1.08998 * 109.68062 * 172.65414 * 4 2 1 31 31 H 1.08994 * 109.68598 * 52.09450 * 4 2 1 32 32 H 1.09008 * 109.47236 * 269.99538 * 10 9 6 33 33 H 1.08995 * 109.47434 * 29.99553 * 10 9 6 34 34 H 1.08999 * 109.47355 * 150.00075 * 10 9 6 35 35 H 1.08998 * 109.47049 * 144.99997 * 11 9 6 36 36 H 1.09001 * 109.46896 * 25.00268 * 11 9 6 37 37 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.67851 * 170.00530 * 20 5 4 39 39 H 1.08995 * 109.68385 * 290.56495 * 20 5 4 40 40 H 1.08999 * 115.55060 * 34.21085 * 23 21 20 41 41 H 1.08999 * 117.49648 * 0.02562 * 24 23 21 42 42 H 1.08998 * 117.50410 * 145.01814 * 24 23 21 43 43 H 1.08990 * 117.49909 * 252.50313 * 25 24 23 44 44 H 1.09001 * 117.49521 * 107.48498 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 1.6960 -2.1502 -1.1346 6 16 0.9279 -2.9436 -2.3686 7 8 0.2541 -1.9488 -3.1273 8 8 0.2646 -4.0541 -1.7802 9 7 2.1017 -3.5689 -3.3551 10 6 2.6157 -2.7769 -4.4752 11 6 2.6264 -4.9143 -3.1076 12 6 3.8803 -4.8195 -2.2771 13 1 4.2520 -3.8536 -1.9686 14 6 4.5560 -5.9657 -1.9155 15 7 4.1031 -7.1420 -2.2907 16 14 6.1145 -5.8478 -0.8925 17 1 6.4101 -4.4216 -0.6033 18 1 5.9259 -6.5833 0.3836 19 1 7.2469 -6.4448 -1.6452 20 6 2.0472 -2.8483 0.1123 21 6 1.5397 -2.0216 1.2938 22 1 0.4497 -2.0289 1.2995 23 6 2.0615 -2.6213 2.6011 24 6 1.0417 -3.2768 3.5343 25 6 1.6620 -1.9284 3.9053 26 8 2.0076 -0.6768 1.1652 27 1 -0.3633 -1.0277 0.0018 28 1 -0.3633 0.5153 0.8891 29 1 -0.3634 0.5123 -0.8908 30 1 3.1241 -0.6140 -1.3211 31 1 1.5704 -0.3031 -2.1378 32 1 2.0183 -2.9757 -5.3651 33 1 2.5573 -1.7170 -4.2277 34 1 3.6538 -3.0488 -4.6664 35 1 2.8558 -5.3954 -4.0584 36 1 1.8804 -5.5026 -2.5734 37 1 4.5782 -7.9484 -2.0360 38 1 1.5789 -3.8325 0.1263 39 1 3.1298 -2.9552 0.1807 40 1 3.0560 -3.0646 2.5509 41 1 -0.0011 -3.2812 3.2168 42 1 1.3649 -4.1518 4.0983 43 1 2.3934 -1.9162 4.7133 44 1 1.0273 -1.0452 3.8320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408333532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = -88.133171 kcal Electronic energy + Delta-G solvation = -27267.736805 eV Core-core repulsion = 23541.180290 eV Total energy + Delta-G solvation = -3726.556515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79079 -36.97299 -36.68978 -35.50831 -35.27853 -34.47988 -32.51151 -32.05134 -28.78852 -27.81764 -25.85950 -25.08930 -23.93439 -22.33548 -22.27077 -21.16638 -19.76076 -18.40265 -17.48502 -16.87207 -16.50205 -16.41738 -15.96329 -15.67508 -15.01703 -14.62578 -14.56519 -14.23689 -14.15554 -13.60934 -13.35067 -13.25377 -12.60305 -12.39088 -12.21697 -12.11974 -11.99443 -11.75788 -11.75182 -11.53374 -11.40494 -11.26234 -11.19866 -11.16179 -11.12032 -10.80497 -10.59527 -10.52696 -10.37430 -10.12721 -9.93266 -9.90197 -9.77756 -8.56071 -8.48534 -8.05247 -6.13998 -4.20716 1.17926 3.21763 3.30133 3.31675 3.36583 3.49608 4.02962 4.12634 4.33924 4.59123 4.77332 4.88854 4.92440 5.01117 5.06856 5.14589 5.20261 5.21883 5.29166 5.48803 5.53990 5.55866 5.62932 5.65778 5.76180 5.87210 5.88623 5.92304 6.04359 6.12791 6.13259 6.17461 6.23275 6.37703 6.39027 6.52439 6.79502 7.29368 7.30514 7.40186 7.59791 7.83032 8.12087 8.84814 9.45621 10.94061 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.006880 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.120693 B = 4068.792541 C = 5660.949337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.110 0.890 4 C 0.091 3.909 5 N -1.004 6.004 6 S 2.785 3.215 7 O -0.997 6.997 8 O -0.975 6.975 9 N -0.996 5.996 10 C 0.107 3.893 11 C 0.243 3.757 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.103 3.897 21 C 0.108 3.892 22 H 0.064 0.936 23 C -0.147 4.147 24 C -0.173 4.173 25 C -0.165 4.165 26 O -0.367 6.367 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 12.551 6.284 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.021 3.979 3 H 0.128 0.872 4 C -0.036 4.036 5 N -0.842 5.842 6 S 2.795 3.205 7 O -0.981 6.981 8 O -0.959 6.959 9 N -0.838 5.838 10 C -0.040 4.040 11 C 0.121 3.879 12 C -0.578 4.578 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.023 4.023 21 C 0.049 3.951 22 H 0.082 0.918 23 C -0.166 4.166 24 C -0.210 4.210 25 C -0.203 4.203 26 O -0.286 6.286 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.963 12.326 6.258 14.688 hybrid contribution 1.360 -0.204 0.290 1.406 sum -3.603 12.122 6.548 14.241 Atomic orbital electron populations 1.22414 0.96335 1.02858 1.02744 1.22463 0.93735 0.96197 0.85538 0.87237 1.22057 1.01291 0.80938 0.99270 1.58234 1.77476 1.18251 1.30264 1.01775 0.73755 0.72430 0.72535 1.93521 1.72578 1.61312 1.70714 1.93566 1.72518 1.52267 1.77596 1.57664 1.58623 1.26949 1.40592 1.21214 1.00534 0.93497 0.88745 1.19238 0.94777 0.76061 0.97807 1.21576 1.09548 0.93096 1.33532 0.91861 1.24955 0.97681 0.95206 0.96012 1.69946 1.39665 0.97623 1.45520 0.86541 0.83111 0.78273 0.80124 1.19625 1.20789 1.20962 1.21915 1.02334 0.96075 0.81986 1.21870 0.97591 0.82500 0.93110 0.91804 1.22133 1.00481 1.04113 0.89878 1.23020 0.98336 0.96764 1.02831 1.22802 1.03578 0.96040 0.97836 1.87978 1.72499 1.25238 1.42904 0.92230 0.91829 0.91027 0.90746 0.88565 0.93738 0.93023 0.90769 0.94442 0.93146 0.92618 0.87680 0.90067 0.86789 0.88651 0.88271 0.88858 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 8.81 37.16 0.33 -1.91 16 2 C 0.08 0.99 3.93 -26.58 -0.10 0.89 16 3 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 4 C 0.09 1.27 6.09 -3.53 -0.02 1.25 16 5 N -1.00 -17.17 2.92 -113.30 -0.33 -17.50 16 6 S 2.79 55.76 6.13 -107.50 -0.66 55.10 16 7 O -1.00 -19.99 15.83 -57.17 -0.91 -20.90 16 8 O -0.98 -22.50 15.31 -57.17 -0.88 -23.37 16 9 N -1.00 -20.76 3.23 -123.05 -0.40 -21.16 16 10 C 0.11 1.84 10.31 59.84 0.62 2.46 16 11 C 0.24 6.04 5.41 -5.19 -0.03 6.01 16 12 C -0.54 -13.90 9.38 -34.44 -0.32 -14.23 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 16 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.10 1.76 5.96 -3.75 -0.02 1.74 16 21 C 0.11 1.58 2.57 -26.80 -0.07 1.51 16 22 H 0.06 0.92 6.01 -51.93 -0.31 0.61 16 23 C -0.15 -1.93 5.40 -90.62 -0.49 -2.42 16 24 C -0.17 -1.95 10.18 -26.73 -0.27 -2.22 16 25 C -0.17 -1.82 10.16 -26.73 -0.27 -2.09 16 26 O -0.37 -5.23 10.14 -35.23 -0.36 -5.58 16 27 H 0.06 0.82 6.11 -51.93 -0.32 0.50 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.26 6.94 -51.93 -0.36 0.90 16 32 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 34 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.11 1.97 6.94 -51.93 -0.36 1.61 16 39 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 40 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 41 H 0.10 1.04 8.05 -51.93 -0.42 0.63 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -31.06 363.75 -10.22 -41.28 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.14 Total: 3.02 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.75 Total: -7.40 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.01 Total: -63.09 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -2.14 Total: -49.85 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 55.76 SS G_CDS: -0.66 Total: 55.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.06 -10.22 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408333532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.855 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds