Wall clock time and date at job start Tue Mar 31 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.51008 * 2 1 4 4 C 1.52878 * 109.62374 * 240.00960 * 2 1 3 5 5 N 1.47156 * 108.60671 * 187.89296 * 4 2 1 6 6 S 1.65608 * 120.98188 * 230.49755 * 5 4 2 7 7 O 1.42098 * 106.39902 * 156.17977 * 6 5 4 8 8 O 1.42102 * 106.40068 * 23.26092 * 6 5 4 9 9 N 1.65600 * 107.21953 * 269.72092 * 6 5 4 10 10 C 1.46495 * 120.00100 * 270.00384 * 9 6 5 11 11 C 1.46500 * 119.99666 * 89.99709 * 9 6 5 12 12 C 1.50694 * 109.47517 * 265.00027 * 11 9 6 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.47149 * 118.03323 * 50.23050 * 5 4 2 21 21 C 1.53297 * 108.38499 * 309.71019 * 20 5 4 22 22 H 1.08997 * 109.51411 * 292.38374 * 21 20 5 23 23 C 1.52997 * 109.51299 * 172.27881 * 21 20 5 24 24 C 1.52993 * 117.50063 * 248.74835 * 23 21 20 25 25 C 1.52998 * 117.49788 * 180.08823 * 23 21 20 26 26 O 1.42962 * 109.51540 * 120.10072 * 2 1 3 27 27 H 1.08999 * 109.47322 * 299.89599 * 1 2 3 28 28 H 1.08998 * 109.47621 * 59.89485 * 1 2 3 29 29 H 1.09003 * 109.47171 * 179.89953 * 1 2 3 30 30 H 1.09003 * 109.61922 * 68.07455 * 4 2 1 31 31 H 1.08994 * 109.52636 * 307.65822 * 4 2 1 32 32 H 1.09006 * 109.47078 * 270.00031 * 10 9 6 33 33 H 1.08997 * 109.47320 * 29.99838 * 10 9 6 34 34 H 1.08995 * 109.47441 * 149.99939 * 10 9 6 35 35 H 1.09005 * 109.46643 * 145.00559 * 11 9 6 36 36 H 1.08998 * 109.47481 * 25.00393 * 11 9 6 37 37 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.68689 * 69.43817 * 20 5 4 39 39 H 1.09005 * 109.68031 * 189.95639 * 20 5 4 40 40 H 1.08999 * 115.54950 * 34.42384 * 23 21 20 41 41 H 1.09004 * 117.49886 * 359.97438 * 24 23 21 42 42 H 1.09001 * 117.50394 * 145.02224 * 24 23 21 43 43 H 1.08998 * 117.49840 * 214.98167 * 25 23 21 44 44 H 1.08997 * 117.50080 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0434 -0.7198 -1.2472 5 7 3.5022 -0.8748 -1.1327 6 16 4.5077 -0.4162 -2.3661 7 8 5.7753 -0.1612 -1.7766 8 8 3.7954 0.5504 -3.1261 9 7 4.7064 -1.7321 -3.3516 10 6 5.7992 -2.6754 -3.1026 11 6 3.7892 -1.9529 -4.4724 12 6 2.6897 -2.8903 -4.0447 13 1 2.6752 -3.2822 -3.0384 14 6 1.7021 -3.2479 -4.9379 15 7 1.7195 -2.7703 -6.1631 16 14 0.3395 -4.4106 -4.4079 17 1 0.7493 -5.8112 -4.6823 18 1 0.0852 -4.2450 -2.9542 19 1 -0.8992 -4.0996 -5.1657 20 6 4.0416 -1.4439 0.1125 21 6 3.4312 -0.6838 1.2956 22 1 3.8021 0.3411 1.3003 23 6 3.8222 -1.3748 2.6035 24 6 2.7140 -2.0778 3.3898 25 6 3.3048 -0.7640 3.9073 26 8 2.0075 -0.6758 1.1658 27 1 -0.3634 0.5122 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3634 -1.0277 -0.0018 30 1 1.8052 -0.1315 -2.1334 31 1 1.5746 -1.7010 -1.3204 32 1 6.6854 -2.3583 -3.6526 33 1 6.0228 -2.6991 -2.0361 34 1 5.5028 -3.6705 -3.4339 35 1 4.3354 -2.3908 -5.3080 36 1 3.3560 -1.0013 -4.7804 37 1 1.0249 -3.0221 -6.7917 38 1 3.7774 -2.4993 0.1786 39 1 5.1262 -1.3354 0.1261 40 1 4.8141 -1.8266 2.6182 41 1 1.7062 -2.0476 2.9756 42 1 2.9767 -2.9919 3.9222 43 1 3.9561 -0.8143 4.7799 44 1 2.6855 0.1299 3.8334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408333533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:37 Heat of formation + Delta-G solvation = -91.138587 kcal Electronic energy + Delta-G solvation = -27018.640741 eV Core-core repulsion = 23291.953901 eV Total energy + Delta-G solvation = -3726.686840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.66911 -36.91362 -36.68908 -35.50794 -35.28058 -34.50857 -32.51869 -32.43441 -28.65240 -27.81778 -25.83159 -25.10278 -23.47974 -22.44862 -22.27540 -21.13548 -20.24067 -18.42091 -17.40451 -16.82821 -16.60320 -16.42106 -15.82316 -15.74407 -15.10784 -14.96088 -14.50952 -14.27442 -13.94611 -13.47302 -13.27441 -13.00087 -12.59932 -12.41784 -12.22250 -12.20317 -12.05784 -11.78385 -11.75712 -11.54741 -11.49769 -11.24275 -11.20727 -11.15631 -11.10627 -10.80696 -10.65667 -10.54752 -10.35722 -10.15595 -10.05096 -9.85876 -9.78970 -8.57087 -8.49605 -8.05375 -6.13969 -4.20836 1.17596 3.22606 3.30052 3.31088 3.37575 3.54698 3.82142 4.04283 4.33798 4.50858 4.80759 4.85437 4.92023 5.01958 5.06832 5.15352 5.20290 5.32272 5.32847 5.43185 5.46140 5.55802 5.60383 5.66513 5.82143 5.85957 5.89449 5.96436 6.04571 6.07554 6.15755 6.21355 6.23332 6.35174 6.40003 6.51727 6.78291 7.29286 7.30281 7.40081 7.59644 7.82856 8.12042 8.84360 9.45460 10.93993 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.005684 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.989987 B = 4924.867986 C = 5927.682938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.059 0.941 4 C 0.098 3.902 5 N -1.006 6.006 6 S 2.786 3.214 7 O -0.998 6.998 8 O -0.975 6.975 9 N -0.996 5.996 10 C 0.107 3.893 11 C 0.244 3.756 12 C -0.539 4.539 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.096 3.904 21 C 0.113 3.887 22 H 0.064 0.936 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.174 4.174 26 O -0.372 6.372 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 2.334 15.530 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.028 4.028 5 N -0.844 5.844 6 S 2.796 3.204 7 O -0.982 6.982 8 O -0.959 6.959 9 N -0.838 5.838 10 C -0.040 4.040 11 C 0.122 3.878 12 C -0.578 4.578 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.197 1.197 19 H -0.211 1.211 20 C -0.030 4.030 21 C 0.054 3.946 22 H 0.082 0.918 23 C -0.172 4.172 24 C -0.199 4.199 25 C -0.211 4.211 26 O -0.291 6.291 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.213 3.100 15.303 15.770 hybrid contribution -0.756 -1.132 -0.051 1.362 sum 1.458 1.968 15.253 15.448 Atomic orbital electron populations 1.21721 0.92382 1.03334 1.02564 1.22378 0.95264 0.95156 0.85326 0.92326 1.22008 0.79361 1.02578 0.98858 1.58282 1.17280 1.79378 1.29465 1.01757 0.72466 0.73933 0.72271 1.93521 1.41296 1.85010 1.78367 1.93564 1.74147 1.58349 1.69866 1.57655 1.39526 1.42923 1.43674 1.21213 0.88660 0.94655 0.99449 1.19230 0.87119 0.98236 0.83247 1.21538 1.09070 1.28631 0.98593 0.91945 1.24949 0.97893 0.96176 0.94800 1.69938 1.34423 1.43842 1.04550 0.86585 0.81472 0.81099 0.78799 1.20657 1.19692 1.21085 1.21975 0.99062 0.98412 0.83559 1.21740 0.81954 0.98267 0.92654 0.91819 1.22240 0.99375 1.04911 0.90716 1.22860 0.99216 0.95390 1.02432 1.22924 1.03872 0.97929 0.96411 1.87872 1.20183 1.77712 1.43372 0.91890 0.90511 0.91455 0.87735 0.90046 0.93720 0.93040 0.90770 0.94432 0.93158 0.92569 0.90662 0.88609 0.86479 0.87530 0.89230 0.89027 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 37.15 0.36 -1.35 16 2 C 0.08 1.10 3.38 -26.80 -0.09 1.01 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.10 1.65 5.98 -3.75 -0.02 1.63 16 5 N -1.01 -17.39 3.40 -113.30 -0.39 -17.78 16 6 S 2.79 55.97 6.13 -107.50 -0.66 55.31 16 7 O -1.00 -20.29 15.83 -57.17 -0.91 -21.19 16 8 O -0.98 -22.45 15.30 -57.17 -0.88 -23.32 16 9 N -1.00 -20.72 3.23 -123.06 -0.40 -21.12 16 10 C 0.11 1.85 10.31 59.84 0.62 2.46 16 11 C 0.24 6.03 5.41 -5.20 -0.03 6.00 16 12 C -0.54 -13.88 9.38 -34.44 -0.32 -14.20 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 16 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.10 1.39 5.98 -3.53 -0.02 1.37 16 21 C 0.11 1.49 3.13 -26.58 -0.08 1.40 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.15 -1.66 5.71 -90.63 -0.52 -2.18 16 24 C -0.16 -1.68 9.88 -26.70 -0.26 -1.94 16 25 C -0.17 -1.68 10.20 -26.70 -0.27 -1.95 16 26 O -0.37 -5.21 8.39 -35.23 -0.30 -5.51 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.91 6.94 -51.93 -0.36 1.55 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.07 1.26 8.07 -51.93 -0.42 0.85 16 35 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.10 1.31 6.95 -51.93 -0.36 0.95 16 40 H 0.12 1.10 8.12 -51.93 -0.42 0.67 16 41 H 0.11 1.26 7.07 -51.93 -0.37 0.89 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -30.79 366.45 -10.33 -41.13 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.31 Total: 2.01 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.75 Total: -6.11 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.05 Total: -63.23 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.08 Total: -50.02 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 55.97 SS G_CDS: -0.66 Total: 55.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.79 -10.33 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408333533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.012 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds