Wall clock time and date at job start Tue Mar 31 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47077 * 240.00294 * 2 1 3 5 5 H 1.08004 * 120.00376 * 239.99973 * 4 2 1 6 6 C 1.37886 * 120.00120 * 59.99812 * 4 2 1 7 7 N 1.31516 * 119.99661 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47281 * 60.00166 * 8 6 4 10 10 H 1.48505 * 109.46832 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47113 * 299.99711 * 8 6 4 12 12 C 1.53002 * 109.47449 * 120.00153 * 2 1 3 13 13 S 1.81394 * 109.47062 * 299.99916 * 12 2 1 14 14 O 1.42106 * 110.54075 * 68.37410 * 13 12 2 15 15 O 1.42094 * 110.54551 * 291.62622 * 13 12 2 16 16 N 1.65607 * 104.44829 * 179.97438 * 13 12 2 17 17 C 1.46495 * 119.99819 * 65.00291 * 16 13 12 18 18 H 1.08998 * 109.63090 * 334.60089 * 17 16 13 19 19 C 1.53062 * 109.79538 * 214.10119 * 17 16 13 20 20 C 1.51797 * 110.74194 * 155.28824 * 19 17 16 21 21 C 1.51776 * 113.81261 * 66.80180 * 20 19 17 22 22 C 1.52983 * 110.88509 * 292.99997 * 21 20 19 23 23 N 1.47191 * 108.86945 * 86.39646 * 22 21 20 24 24 C 1.33373 * 120.42648 * 288.46687 * 23 22 21 25 25 O 1.21283 * 119.89418 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.46896 * 299.99772 * 1 2 3 27 27 H 1.08995 * 109.47506 * 59.99857 * 1 2 3 28 28 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47119 * 180.02562 * 3 2 1 30 30 H 1.08991 * 109.47619 * 300.00248 * 3 2 1 31 31 H 1.09002 * 109.47144 * 60.00379 * 3 2 1 32 32 H 0.96996 * 119.99560 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47028 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.46708 * 59.99864 * 12 2 1 35 35 H 0.97003 * 119.99619 * 245.00089 * 16 13 12 36 36 H 1.08998 * 109.22245 * 275.61103 * 19 17 16 37 37 H 1.08996 * 109.22378 * 35.00608 * 19 17 16 38 38 H 1.08994 * 108.61525 * 187.92764 * 20 19 17 39 39 H 1.09006 * 108.61198 * 305.82401 * 20 19 17 40 40 H 1.09003 * 109.19312 * 53.35878 * 21 20 19 41 41 H 1.08990 * 109.19392 * 172.63222 * 21 20 19 42 42 H 1.09002 * 109.60351 * 206.22079 * 22 21 20 43 43 H 1.08997 * 109.60548 * 326.54529 * 22 21 20 44 44 H 0.96998 * 119.79088 * 108.22088 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 16 1.4355 0.1338 2.7303 14 8 0.0281 -0.0184 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0533 -0.7410 3.9936 17 6 3.5016 -0.7982 4.2058 18 1 4.0173 -0.6238 3.2615 19 6 3.8907 -2.1717 4.7582 20 6 5.3375 -2.4930 4.4300 21 6 6.3393 -1.5973 5.1355 22 6 6.2382 -0.1585 4.6256 23 7 5.1997 0.5469 5.3940 24 6 3.9106 0.2574 5.2114 25 8 3.0629 0.8450 5.8495 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7086 1.1613 -3.4844 33 1 3.1301 -0.7216 1.2489 34 1 1.6767 -1.7489 1.2491 35 1 1.4560 -1.2154 4.5929 36 1 3.7592 -2.1737 5.8402 37 1 3.2459 -2.9317 4.3170 38 1 5.5367 -3.5270 4.7113 39 1 5.4808 -2.3923 3.3541 40 1 6.1411 -1.6125 6.2072 41 1 7.3462 -1.9724 4.9527 42 1 7.1958 0.3449 4.7587 43 1 5.9711 -0.1628 3.5689 44 1 5.4546 1.2243 6.0398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408455778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:17 Heat of formation + Delta-G solvation = -115.583973 kcal Electronic energy + Delta-G solvation = -26801.710297 eV Core-core repulsion = 23073.963425 eV Total energy + Delta-G solvation = -3727.746871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40436 -36.84561 -36.48737 -36.28286 -35.45613 -35.19664 -32.97479 -31.68269 -29.85872 -26.68545 -26.04865 -25.71740 -25.23264 -24.28583 -21.16971 -20.05558 -19.61251 -18.64725 -17.51633 -17.33069 -17.03776 -16.11239 -15.83358 -15.24314 -15.09267 -14.76756 -14.54850 -14.33086 -14.25940 -13.80350 -13.42006 -13.08484 -12.99923 -12.53811 -12.48627 -12.09075 -12.02655 -11.90815 -11.38000 -11.30379 -11.15767 -11.08068 -11.06097 -10.99436 -10.95179 -10.69705 -10.46798 -10.35417 -10.26277 -10.07471 -9.66017 -9.55355 -9.25892 -9.13491 -8.69174 -8.41161 -6.04436 -4.16942 0.84353 2.65696 3.03683 3.25201 3.29145 3.31383 3.32134 4.19603 4.28053 4.35168 4.44146 4.46744 4.58678 4.79604 4.81304 4.87425 5.08070 5.13582 5.20770 5.29954 5.47540 5.59024 5.61130 5.65609 5.68428 5.76186 5.89982 5.97160 6.34596 6.68476 6.72638 6.79291 6.91270 7.01448 7.08101 7.18111 7.30807 7.49701 7.66296 7.97426 8.08405 8.23552 8.31474 8.81179 9.48418 10.96858 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.004471 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.855609 B = 6261.310923 C = 7073.356774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.584 4.584 13 S 2.590 3.410 14 O -0.960 6.960 15 O -0.956 6.956 16 N -1.108 6.108 17 C 0.140 3.860 18 H 0.107 0.893 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.143 4.143 22 C 0.100 3.900 23 N -0.726 5.726 24 C 0.506 3.494 25 O -0.527 6.527 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.416 0.584 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.063 -7.177 13.702 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.717 4.717 13 S 2.688 3.312 14 O -0.950 6.950 15 O -0.946 6.946 16 N -0.862 5.862 17 C 0.028 3.972 18 H 0.125 0.875 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.181 4.181 22 C -0.024 4.024 23 N -0.380 5.380 24 C 0.289 3.711 25 O -0.402 6.402 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.006 -6.007 13.748 18.607 hybrid contribution 0.722 -0.968 -0.643 1.368 sum 11.728 -6.976 13.105 18.919 Atomic orbital electron populations 1.22279 0.96874 1.00676 1.02374 1.17925 0.92892 0.92195 0.88934 1.22278 0.99606 0.97834 1.02451 1.20889 1.31889 1.12106 0.89365 0.92346 1.24943 0.94878 0.94972 0.98918 1.69795 1.36115 1.22537 1.23615 0.86595 0.79083 0.79721 0.82193 1.20271 1.21183 1.20307 1.30578 1.10970 1.13114 1.17036 1.05830 0.74639 0.75296 0.75459 1.93557 1.29221 1.86539 1.85723 1.93563 1.77909 1.37838 1.85251 1.55737 1.12059 1.71083 1.47327 1.20785 0.82512 0.95043 0.98901 0.87506 1.21624 0.97462 0.94746 1.02212 1.21181 0.93266 1.00253 1.01623 1.21861 1.00061 0.94935 1.01287 1.21861 0.91612 0.92474 0.96459 1.45892 1.06150 1.42182 1.43770 1.20963 0.82384 0.83794 0.83931 1.90738 1.50032 1.51460 1.48006 0.95368 0.88608 0.94418 0.94553 0.88637 0.95259 0.92656 0.86716 0.86062 0.75038 0.90883 0.89188 0.90852 0.90976 0.91052 0.90235 0.89199 0.90224 0.76344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 7.78 37.16 0.29 -3.79 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 4 C -0.50 -12.94 8.01 -34.44 -0.28 -13.21 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.94 9.35 55.43 0.52 -23.42 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C -0.58 -11.13 4.90 37.16 0.18 -10.94 16 13 S 2.59 50.32 4.42 -107.50 -0.48 49.84 16 14 O -0.96 -21.22 15.70 -57.54 -0.90 -22.12 16 15 O -0.96 -21.41 15.43 -57.54 -0.89 -22.30 16 16 N -1.11 -16.41 4.88 -5.55 -0.03 -16.44 16 17 C 0.14 1.74 2.25 -68.70 -0.15 1.58 16 18 H 0.11 1.20 5.80 -51.93 -0.30 0.90 16 19 C -0.12 -1.03 5.25 -27.31 -0.14 -1.17 16 20 C -0.13 -0.79 5.28 -27.96 -0.15 -0.93 16 21 C -0.14 -0.79 5.74 -27.36 -0.16 -0.94 16 22 C 0.10 0.67 6.45 -3.67 -0.02 0.65 16 23 N -0.73 -7.37 5.29 -59.91 -0.32 -7.69 16 24 C 0.51 7.24 6.99 -11.25 -0.08 7.16 16 25 O -0.53 -9.95 17.31 5.55 0.10 -9.85 16 26 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 27 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 31 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.11 1.89 7.44 -51.93 -0.39 1.50 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.42 5.41 8.80 -34.47 -0.30 5.10 16 36 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 37 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 40 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.56 6.72 -51.93 -0.35 0.21 16 44 H 0.40 3.61 8.91 -40.82 -0.36 3.25 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -35.61 346.82 -8.82 -44.43 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.63 Total: 8.89 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.39 Total: -21.82 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.17 Total: -47.55 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -1.69 Total: -54.27 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -0.48 Total: 49.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.61 -8.82 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408455778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.153 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds