Wall clock time and date at job start Tue Mar 31 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46953 * 2 1 4 4 H 1.09000 * 109.65926 * 55.29159 * 3 2 1 5 5 C 1.50437 * 109.56554 * 175.58911 * 3 2 1 6 6 O 1.21273 * 118.49161 * 287.08827 * 5 3 2 7 7 N 1.33379 * 123.01801 * 107.11554 * 5 3 2 8 8 C 1.45646 * 124.59442 * 4.31642 * 7 5 3 9 9 C 1.53473 * 110.73759 * 337.98067 * 8 7 5 10 10 N 1.47047 * 109.56128 * 294.99716 * 3 2 1 11 11 S 1.65600 * 121.35353 * 102.89733 * 10 3 2 12 12 O 1.42107 * 104.27629 * 333.92360 * 11 10 3 13 13 O 1.42102 * 104.27841 * 206.06497 * 11 10 3 14 14 C 1.81404 * 104.45074 * 89.99323 * 11 10 3 15 15 C 1.53000 * 109.46946 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47233 * 299.99763 * 15 14 11 17 17 C 1.52996 * 109.47328 * 60.00232 * 15 14 11 18 18 C 1.50703 * 109.46912 * 180.02562 * 15 14 11 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00114 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46828 * 90.00636 * 22 20 18 24 24 H 1.48494 * 109.47178 * 210.00332 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00579 * 22 20 18 26 26 H 1.08999 * 109.46937 * 60.00612 * 1 2 3 27 27 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47681 * 299.99968 * 1 2 3 29 29 H 1.08994 * 109.47415 * 239.99298 * 2 1 3 30 30 H 1.08999 * 109.46937 * 119.99388 * 2 1 3 31 31 H 0.97002 * 117.70519 * 184.34271 * 7 5 3 32 32 H 1.08995 * 109.22084 * 98.42943 * 8 7 5 33 33 H 1.09005 * 109.21789 * 217.81194 * 8 7 5 34 34 H 1.09006 * 109.84588 * 287.31555 * 9 8 7 35 35 H 1.08992 * 109.84153 * 166.50310 * 9 8 7 36 36 H 1.09002 * 109.47124 * 60.00022 * 14 11 10 37 37 H 1.09001 * 109.46975 * 300.00144 * 14 11 10 38 38 H 1.09000 * 109.46986 * 60.00203 * 16 15 14 39 39 H 1.08993 * 109.47662 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.47075 * 300.00932 * 16 15 14 41 41 H 1.08992 * 109.47554 * 59.99639 * 17 15 14 42 42 H 1.09004 * 109.47108 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.46870 * 299.99783 * 17 15 14 44 44 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6111 1.9831 0.8438 5 6 3.5404 1.4465 0.1090 6 8 4.0437 1.1610 1.1748 7 7 4.3425 1.7500 -0.9125 8 6 3.8830 2.1982 -2.2199 9 6 2.4294 1.7691 -2.4615 10 7 1.6520 2.1019 -1.2558 11 16 0.3880 3.1702 -1.3134 12 8 -0.4521 2.7774 -0.2366 13 8 -0.0657 3.1042 -2.6584 14 6 1.1437 4.7843 -0.9750 15 6 0.0641 5.8682 -1.0003 16 6 -0.5996 5.8948 -2.3786 17 6 -0.9889 5.5643 0.0671 18 6 0.6920 7.2092 -0.7198 19 1 1.7548 7.2811 -0.5418 20 6 -0.0901 8.3442 -0.6916 21 7 -1.3842 8.2567 -0.9090 22 14 0.6881 10.0063 -0.3432 23 1 1.1129 10.6316 -1.6214 24 1 -0.3009 10.8841 0.3325 25 1 1.8709 9.8245 0.5361 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 5.2991 1.6661 -0.7751 32 1 3.9517 3.2848 -2.2713 33 1 4.5168 1.7618 -2.9919 34 1 2.3858 0.6950 -2.6423 35 1 2.0236 2.3040 -3.3200 36 1 1.8943 5.0006 -1.7352 37 1 1.6162 4.7655 0.0071 38 1 -1.0537 4.9249 -2.5820 39 1 -1.3684 6.6672 -2.3969 40 1 0.1507 6.1112 -3.1391 41 1 -0.5161 5.5454 1.0490 42 1 -1.7578 6.3368 0.0494 43 1 -1.4430 4.5945 -0.1362 44 1 -1.9344 9.0553 -0.8895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408456833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:24 Heat of formation + Delta-G solvation = -105.310464 kcal Electronic energy + Delta-G solvation = -27269.393547 eV Core-core repulsion = 23542.092168 eV Total energy + Delta-G solvation = -3727.301379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52880 -37.11369 -36.80670 -36.33924 -35.51488 -35.00045 -32.32858 -31.71261 -29.47750 -26.90110 -26.50979 -25.77787 -25.26694 -23.88201 -22.24495 -19.91199 -19.18791 -18.68137 -17.80481 -17.25609 -16.68789 -16.14602 -15.87865 -15.55343 -15.21149 -14.82979 -14.61947 -14.33219 -14.17420 -13.38614 -13.19475 -13.11023 -12.79354 -12.58982 -12.54138 -12.30115 -12.22491 -11.86712 -11.72042 -11.44061 -11.35150 -11.16008 -11.08134 -10.99172 -10.87771 -10.75476 -10.47702 -10.33460 -10.27700 -10.14263 -9.71477 -9.59466 -9.35088 -9.02940 -8.71892 -8.44411 -6.07758 -4.19947 0.65074 2.41595 2.78482 3.09026 3.23019 3.30732 3.32915 4.17325 4.24503 4.33425 4.40705 4.48886 4.80187 4.84025 4.89091 5.02924 5.11978 5.17663 5.31909 5.42785 5.50037 5.57684 5.62627 5.72951 5.82695 5.93771 6.10955 6.25816 6.29995 6.45932 6.59139 6.63894 6.73210 6.83627 6.97367 7.07124 7.25463 7.44337 7.63507 7.92821 7.99579 8.04206 8.27865 8.78478 9.45857 10.93571 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.004728 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.992127 B = 5921.077145 C = 6434.565857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.145 3.855 4 H 0.128 0.872 5 C 0.520 3.480 6 O -0.548 6.548 7 N -0.714 5.714 8 C 0.091 3.909 9 C 0.103 3.897 10 N -1.009 6.009 11 S 2.590 3.410 12 O -0.950 6.950 13 O -0.957 6.957 14 C -0.581 4.581 15 C 0.082 3.918 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -13.871 -3.624 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.036 3.964 4 H 0.145 0.855 5 C 0.305 3.695 6 O -0.425 6.425 7 N -0.366 5.366 8 C -0.035 4.035 9 C -0.023 4.023 10 N -0.845 5.845 11 S 2.690 3.310 12 O -0.940 6.940 13 O -0.948 6.948 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.234 0.766 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.400 -14.151 -3.300 16.306 hybrid contribution 1.498 1.410 0.193 2.066 sum 8.898 -12.741 -3.107 15.848 Atomic orbital electron populations 1.21774 0.93655 1.01373 1.03643 1.21743 0.97831 0.93469 1.03021 1.21167 0.90428 0.96960 0.87889 0.85474 1.20307 0.89991 0.75841 0.83325 1.90774 1.75780 1.49196 1.26775 1.45282 1.10346 1.68146 1.12824 1.21942 0.96438 1.00698 0.84428 1.21847 0.89562 1.02760 0.88151 1.58507 1.52766 1.59607 1.13630 1.05959 0.73956 0.76354 0.74738 1.93572 1.62885 1.81251 1.56294 1.93543 1.78145 1.86634 1.36440 1.30586 1.12484 1.18267 1.10121 1.17942 0.88938 0.91442 0.93670 1.22276 1.02121 1.01136 0.96555 1.22276 1.01321 1.00413 0.98148 1.20925 0.94211 0.90094 1.48982 0.92352 1.24930 0.94878 0.99047 0.94813 1.69792 1.04328 1.28982 1.49020 0.86537 0.79087 0.83616 0.78427 1.20615 1.21067 1.19946 0.92906 0.92618 0.90862 0.91441 0.89946 0.76564 0.90707 0.89238 0.90005 0.86705 0.86511 0.86496 0.95445 0.88579 0.94488 0.94424 0.88614 0.95304 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.56 37.16 0.32 -1.53 16 2 C -0.12 -1.38 5.50 -26.73 -0.15 -1.53 16 3 C 0.14 1.87 2.36 -68.91 -0.16 1.71 16 4 H 0.13 1.75 7.48 -51.93 -0.39 1.36 16 5 C 0.52 6.73 7.10 -11.73 -0.08 6.65 16 6 O -0.55 -8.86 17.80 5.56 0.10 -8.76 16 7 N -0.71 -6.89 5.42 -61.07 -0.33 -7.22 16 8 C 0.09 0.69 7.35 -4.26 -0.03 0.66 16 9 C 0.10 0.98 6.37 -3.38 -0.02 0.96 16 10 N -1.01 -13.06 2.43 -107.44 -0.26 -13.32 16 11 S 2.59 44.68 3.97 -107.50 -0.43 44.25 16 12 O -0.95 -18.16 12.08 -57.54 -0.70 -18.86 16 13 O -0.96 -18.27 14.33 -57.54 -0.82 -19.10 16 14 C -0.58 -10.89 5.12 37.16 0.19 -10.70 16 15 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 16 C -0.16 -3.87 7.77 37.16 0.29 -3.59 16 17 C -0.16 -3.93 7.78 37.16 0.29 -3.65 16 18 C -0.50 -12.95 8.01 -34.44 -0.28 -13.23 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.72 9.35 55.43 0.52 -23.20 16 22 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.05 0.74 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.00 7.78 -51.93 -0.40 0.59 16 29 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.40 3.24 8.80 -40.82 -0.36 2.88 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.65 7.38 -51.93 -0.38 0.26 16 35 H 0.11 1.07 7.02 -51.93 -0.36 0.71 16 36 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 38 H 0.03 0.61 5.47 -51.93 -0.28 0.33 16 39 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 43 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.15 344.30 -8.30 -40.45 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.74 Total: 5.96 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 0.19 Total: -20.77 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.07 Total: -43.74 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -1.42 Total: -46.71 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 44.68 SS G_CDS: -0.43 Total: 44.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.15 -8.30 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408456833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.864 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds