Wall clock time and date at job start Tue Mar 31 2020 04:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 H 1.08998 * 109.57348 * 58.84571 * 3 2 1 5 5 C 1.50437 * 109.56739 * 298.60680 * 3 2 1 6 6 O 1.21287 * 118.48705 * 47.32848 * 5 3 2 7 7 N 1.33382 * 123.02692 * 227.35131 * 5 3 2 8 8 C 1.45649 * 124.58177 * 4.58579 * 7 5 3 9 9 C 1.53174 * 110.66818 * 337.66468 * 8 7 5 10 10 N 1.47050 * 109.66517 * 179.14522 * 3 2 1 11 11 S 1.65601 * 121.34991 * 342.63473 * 10 3 2 12 12 O 1.42102 * 104.27766 * 195.23778 * 11 10 3 13 13 O 1.42098 * 104.27932 * 323.09511 * 11 10 3 14 14 C 1.81405 * 104.44982 * 79.16798 * 11 10 3 15 15 C 1.52990 * 109.47121 * 180.02562 * 14 11 10 16 16 C 1.53006 * 109.47311 * 299.99564 * 15 14 11 17 17 C 1.53000 * 109.47917 * 59.99696 * 15 14 11 18 18 C 1.50701 * 109.47220 * 180.02562 * 15 14 11 19 19 H 1.08000 * 119.99695 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00030 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00312 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 119.99769 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46830 * 89.99978 * 22 20 18 24 24 H 1.48493 * 109.47280 * 209.99977 * 22 20 18 25 25 H 1.48494 * 109.47381 * 330.00338 * 22 20 18 26 26 H 1.09004 * 109.47015 * 69.63398 * 1 2 3 27 27 H 1.08998 * 109.47242 * 189.62815 * 1 2 3 28 28 H 1.09001 * 109.47442 * 309.63479 * 1 2 3 29 29 H 1.08997 * 109.47411 * 239.99678 * 2 1 3 30 30 H 1.09005 * 109.46674 * 119.99790 * 2 1 3 31 31 H 0.96991 * 117.71164 * 184.29542 * 7 5 3 32 32 H 1.09001 * 109.21857 * 98.17024 * 8 7 5 33 33 H 1.09006 * 109.21241 * 217.50178 * 8 7 5 34 34 H 1.08997 * 109.91455 * 287.35093 * 9 8 7 35 35 H 1.09006 * 109.68306 * 166.64163 * 9 8 7 36 36 H 1.09007 * 109.46560 * 299.99831 * 14 11 10 37 37 H 1.08996 * 109.47137 * 59.99482 * 14 11 10 38 38 H 1.09005 * 109.46524 * 60.00091 * 16 15 14 39 39 H 1.08998 * 109.47221 * 179.97438 * 16 15 14 40 40 H 1.08996 * 109.46847 * 300.00586 * 16 15 14 41 41 H 1.08999 * 109.46748 * 59.99729 * 17 15 14 42 42 H 1.08998 * 109.48023 * 179.97438 * 17 15 14 43 43 H 1.09005 * 109.46990 * 300.00565 * 17 15 14 44 44 H 0.96998 * 119.99880 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6607 1.9639 0.8789 5 6 1.5680 2.1437 -1.2444 6 8 0.4016 2.0395 -1.5602 7 7 2.3732 2.8745 -2.0169 8 6 3.8096 3.0107 -1.8181 9 6 4.1868 2.6969 -0.3670 10 7 3.5103 1.4476 0.0207 11 16 4.3704 0.1029 0.4616 12 8 5.6825 0.5908 0.7061 13 8 3.5996 -0.4801 1.5033 14 6 4.3483 -0.9524 -1.0137 15 6 5.1198 -2.2426 -0.7294 16 6 6.5669 -1.9024 -0.3674 17 6 4.4629 -2.9832 0.4373 18 6 5.1020 -3.1191 -1.9552 19 1 4.5911 -2.7890 -2.8476 20 6 5.7379 -4.3424 -1.9373 21 7 6.3595 -4.7446 -0.8504 22 14 5.7152 -5.4291 -3.4566 23 1 6.8879 -5.1108 -4.3103 24 1 5.7740 -6.8550 -3.0462 25 1 4.4657 -5.1852 -4.2211 26 1 -0.3633 0.3577 -0.9635 27 1 -0.3633 -1.0132 0.1719 28 1 -0.3634 0.6555 0.7914 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.9750 3.3449 -2.7658 32 1 4.3309 2.3235 -2.4845 33 1 4.1089 4.0324 -2.0521 34 1 3.8626 3.5083 0.2846 35 1 5.2665 2.5704 -0.2875 36 1 3.3173 -1.1952 -1.2713 37 1 4.8159 -0.4247 -1.8449 38 1 6.5802 -1.2683 0.5191 39 1 7.1164 -2.8216 -0.1644 40 1 7.0349 -1.3749 -1.1985 41 1 3.4320 -3.2256 0.1794 42 1 5.0122 -3.9027 0.6396 43 1 4.4762 -2.3491 1.3238 44 1 6.8072 -5.6050 -0.8380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408456834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:26 Heat of formation + Delta-G solvation = -90.146096 kcal Electronic energy + Delta-G solvation = -27502.659279 eV Core-core repulsion = 23776.015477 eV Total energy + Delta-G solvation = -3726.643802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55884 -37.08230 -36.93967 -36.37479 -35.49729 -35.10042 -32.31083 -31.67911 -29.51469 -26.94761 -26.01702 -25.78110 -25.26434 -24.08270 -22.09334 -20.08748 -19.24428 -18.75548 -17.60874 -17.26912 -16.57284 -16.09455 -15.87248 -15.74758 -15.42424 -14.86037 -14.77512 -14.35056 -13.66755 -13.49079 -13.16614 -13.11133 -12.87313 -12.58450 -12.53564 -12.28356 -12.14301 -11.99046 -11.77637 -11.42374 -11.27205 -11.16213 -11.09037 -10.93934 -10.76591 -10.63209 -10.42524 -10.31513 -10.13132 -9.82517 -9.69065 -9.51420 -9.32832 -8.95801 -8.72391 -8.44232 -6.07659 -4.19734 0.64749 2.44922 2.75021 3.12194 3.23186 3.30899 3.33184 4.12148 4.29266 4.35295 4.38236 4.45468 4.74268 4.83443 4.92715 5.09997 5.17793 5.20448 5.42516 5.44316 5.60487 5.62285 5.65525 5.78434 5.99841 6.15276 6.23589 6.34317 6.39251 6.56044 6.64783 6.66048 6.73170 6.83497 6.97049 7.11933 7.25569 7.44368 7.63779 7.92840 8.04328 8.05650 8.27928 8.78746 9.46087 10.93680 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.005009 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.444238 B = 5588.890222 C = 5913.399205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 C 0.153 3.847 4 H 0.108 0.892 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.716 5.716 8 C 0.091 3.909 9 C 0.101 3.899 10 N -1.013 6.013 11 S 2.595 3.405 12 O -0.959 6.959 13 O -0.953 6.953 14 C -0.584 4.584 15 C 0.083 3.917 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.398 0.602 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.026 0.974 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 14.992 -0.232 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.228 4.228 3 C 0.044 3.956 4 H 0.125 0.875 5 C 0.301 3.699 6 O -0.417 6.417 7 N -0.368 5.368 8 C -0.035 4.035 9 C -0.025 4.025 10 N -0.849 5.849 11 S 2.695 3.305 12 O -0.949 6.949 13 O -0.943 6.943 14 C -0.718 4.718 15 C 0.081 3.919 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.234 0.766 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.045 0.955 39 H 0.115 0.885 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.186 14.569 0.773 15.484 hybrid contribution -0.165 -0.355 -1.944 1.983 sum -5.350 14.214 -1.171 15.233 Atomic orbital electron populations 1.21807 0.92880 1.01531 1.03943 1.22870 1.00088 0.92939 1.06930 1.21086 0.79471 0.98994 0.96005 0.87473 1.20432 0.85823 0.78491 0.85106 1.90700 1.17396 1.61338 1.72226 1.45343 1.08839 1.50485 1.32170 1.21876 0.80848 1.02791 0.97969 1.21831 0.99929 0.86792 0.93963 1.58444 1.14003 1.27025 1.85422 1.05790 0.73054 0.73397 0.78245 1.93520 1.37398 1.78842 1.85149 1.93444 1.69881 1.76987 1.54010 1.30787 1.10347 1.13192 1.17439 1.17939 0.90600 0.86911 0.96458 1.22284 0.99202 1.02508 0.98150 1.22286 1.00250 1.03825 0.95848 1.20922 1.34373 1.01686 0.97203 0.92325 1.24924 0.94958 0.97559 0.96187 1.69791 1.34600 1.20903 1.26814 0.86546 0.78435 0.79795 0.82949 1.20633 1.21064 1.19936 0.90004 0.92483 0.92832 0.90520 0.84682 0.76645 0.90829 0.89217 0.90073 0.86341 0.85906 0.86429 0.95485 0.88546 0.94458 0.94325 0.88572 0.95365 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.12 37.16 0.34 -1.61 16 2 C -0.19 -2.80 4.32 -26.73 -0.12 -2.92 16 3 C 0.15 2.04 3.12 -68.91 -0.21 1.83 16 4 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.52 6.69 7.35 -11.73 -0.09 6.61 16 6 O -0.54 -8.30 14.36 5.55 0.08 -8.22 16 7 N -0.72 -7.05 5.42 -61.22 -0.33 -7.38 16 8 C 0.09 0.73 7.34 -4.41 -0.03 0.69 16 9 C 0.10 1.00 6.54 -3.53 -0.02 0.98 16 10 N -1.01 -13.63 3.21 -107.61 -0.35 -13.98 16 11 S 2.59 45.78 3.89 -107.50 -0.42 45.36 16 12 O -0.96 -18.56 14.05 -57.54 -0.81 -19.37 16 13 O -0.95 -18.62 12.24 -57.54 -0.70 -19.32 16 14 C -0.58 -11.05 4.85 37.15 0.18 -10.87 16 15 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 16 C -0.16 -3.89 7.77 37.16 0.29 -3.60 16 17 C -0.16 -3.91 7.78 37.16 0.29 -3.63 16 18 C -0.50 -12.91 8.01 -34.44 -0.28 -13.19 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.64 9.35 55.43 0.52 -23.12 16 22 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 H 0.08 1.19 5.71 -51.93 -0.30 0.89 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.08 1.15 5.38 -51.93 -0.28 0.87 16 30 H 0.14 2.19 4.95 -51.93 -0.26 1.93 16 31 H 0.40 3.28 8.80 -40.82 -0.36 2.92 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.12 1.18 6.75 -51.93 -0.35 0.83 16 36 H 0.12 2.19 5.39 -51.92 -0.28 1.91 16 37 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 38 H 0.03 0.60 5.47 -51.93 -0.28 0.32 16 39 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 44 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -31.42 334.61 -8.18 -39.59 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.36 Total: 8.22 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 0.18 Total: -22.21 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.16 Total: -44.48 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.43 Total: -46.91 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.42 Total: 45.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.42 -8.18 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408456834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.553 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds