Wall clock time and date at job start Tue Mar 31 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 C 1.50703 * 109.47245 * 119.99603 * 2 1 3 5 5 H 1.08001 * 119.99764 * 120.00320 * 4 2 1 6 6 C 1.37875 * 120.00177 * 300.00077 * 4 2 1 7 7 N 1.31517 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47316 * 180.02562 * 8 6 4 10 10 H 1.48509 * 109.47007 * 300.00133 * 8 6 4 11 11 H 1.48495 * 109.47245 * 59.99759 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99763 * 2 1 3 13 13 S 1.81402 * 109.47120 * 60.00222 * 12 2 1 14 14 O 1.42102 * 110.53844 * 291.61930 * 13 12 2 15 15 O 1.42100 * 110.54603 * 68.37179 * 13 12 2 16 16 N 1.65597 * 104.44821 * 180.02562 * 13 12 2 17 17 C 1.46929 * 120.63215 * 93.23321 * 16 13 12 18 18 C 1.53199 * 108.77140 * 233.58299 * 17 16 13 19 19 C 1.53044 * 109.31372 * 305.36196 * 18 17 16 20 20 C 1.53038 * 109.53411 * 61.36514 * 19 18 17 21 21 C 1.46925 * 120.63055 * 272.94696 * 16 13 12 22 22 H 1.08997 * 109.59094 * 246.20207 * 21 16 13 23 23 C 1.50704 * 109.58660 * 6.63310 * 21 16 13 24 24 N 1.34781 * 119.99829 * 233.06030 * 23 21 16 25 25 O 1.21284 * 120.00211 * 53.05195 * 23 21 16 26 26 H 1.09003 * 109.47645 * 300.00130 * 1 2 3 27 27 H 1.09000 * 109.47340 * 59.99999 * 1 2 3 28 28 H 1.09004 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47455 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46789 * 299.99732 * 3 2 1 31 31 H 1.08993 * 109.47361 * 59.99860 * 3 2 1 32 32 H 0.97001 * 120.00110 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46857 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.47253 * 299.99807 * 12 2 1 35 35 H 1.08993 * 109.58381 * 353.36929 * 17 16 13 36 36 H 1.08996 * 109.58597 * 113.79944 * 17 16 13 37 37 H 1.08993 * 109.49731 * 65.31855 * 18 17 16 38 38 H 1.09002 * 109.49455 * 185.38189 * 18 17 16 39 39 H 1.08999 * 109.46036 * 181.38805 * 19 18 17 40 40 H 1.09000 * 109.45867 * 301.34692 * 19 18 17 41 41 H 1.09002 * 109.49738 * 58.59347 * 20 19 18 42 42 H 1.09009 * 109.49462 * 178.64920 * 20 19 18 43 43 H 0.97003 * 120.00072 * 359.97438 * 24 23 21 44 44 H 0.96999 * 119.99338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 1.8260 -0.4203 5.2204 10 1 1.8258 -2.5201 4.0078 11 1 3.8063 -1.1207 4.0082 12 6 2.0399 -0.7213 -1.2492 13 16 1.4353 0.1338 -2.7304 14 8 0.0279 -0.0185 -2.8544 15 8 2.0479 1.4100 -2.8544 16 7 2.0529 -0.7409 -3.9935 17 6 1.2699 -1.8203 -4.6104 18 6 2.1115 -3.1004 -4.6130 19 6 3.4510 -2.8242 -5.2998 20 6 4.2119 -1.7474 -4.5229 21 6 3.3919 -0.4483 -4.5228 22 1 3.3073 -0.0664 -5.5402 23 6 4.0673 0.5775 -3.6495 24 7 4.5789 1.6975 -4.1978 25 8 4.1504 0.3955 -2.4533 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7080 1.1610 3.4843 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7489 -1.2491 35 1 0.3578 -1.9838 -4.0365 36 1 1.0158 -1.5480 -5.6347 37 1 2.2883 -3.4217 -3.5866 38 1 1.5800 -3.8841 -5.1530 39 1 4.0418 -3.7398 -5.3250 40 1 3.2725 -2.4793 -6.3183 41 1 4.3691 -2.0814 -3.4973 42 1 5.1761 -1.5683 -4.9989 43 1 4.5127 1.8430 -5.1546 44 1 5.0133 2.3579 -3.6356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408459712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:42 Heat of formation + Delta-G solvation = -104.436812 kcal Electronic energy + Delta-G solvation = -27855.963233 eV Core-core repulsion = 24128.699739 eV Total energy + Delta-G solvation = -3727.263494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07037 -37.76185 -36.26111 -36.04297 -35.19200 -33.55217 -32.48777 -31.48485 -31.27016 -26.44953 -25.53640 -25.13586 -25.04887 -23.87818 -20.96751 -20.56253 -19.18564 -18.55510 -17.63985 -16.91262 -16.40114 -15.90109 -15.78132 -15.20540 -14.72284 -14.58081 -14.44975 -14.41565 -14.17661 -13.69225 -13.42444 -12.98242 -12.65375 -12.57449 -12.30373 -11.96241 -11.83032 -11.55387 -11.33060 -11.13980 -11.05424 -10.95019 -10.93523 -10.79950 -10.57309 -10.47025 -10.25723 -10.13819 -9.93296 -9.67484 -9.48367 -9.40696 -9.30539 -8.88239 -8.47525 -8.26400 -5.89808 -4.00224 0.99059 2.62085 3.17185 3.35293 3.39560 3.42259 3.56861 4.43187 4.48636 4.55744 4.58931 4.78827 4.88940 4.94404 5.01871 5.10546 5.20023 5.34975 5.49447 5.54116 5.61364 5.74537 5.86685 5.93381 5.95715 6.07187 6.19166 6.20159 6.60492 6.65070 6.88049 6.97311 7.04827 7.14435 7.24097 7.42707 7.52186 7.70624 7.81389 8.14422 8.25556 8.45904 8.50231 8.97631 9.63456 11.11525 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.005186 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.766919 B = 5397.353933 C = 5513.005547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 C -0.153 4.153 4 C -0.494 4.494 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.278 1.278 12 C -0.572 4.572 13 S 2.591 3.409 14 O -0.971 6.971 15 O -0.956 6.956 16 N -0.999 5.999 17 C 0.122 3.878 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.125 4.125 21 C 0.141 3.859 22 H 0.087 0.913 23 C 0.520 3.480 24 N -0.836 5.836 25 O -0.524 6.524 26 H 0.094 0.906 27 H 0.024 0.976 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.022 0.978 31 H 0.088 0.912 32 H 0.261 0.739 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.396 0.604 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -4.463 -19.008 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.533 4.533 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.706 4.706 13 S 2.693 3.307 14 O -0.962 6.962 15 O -0.946 6.946 16 N -0.836 5.836 17 C -0.003 4.003 18 C -0.179 4.179 19 C -0.150 4.150 20 C -0.165 4.165 21 C 0.031 3.969 22 H 0.105 0.895 23 C 0.304 3.696 24 N -0.399 5.399 25 O -0.401 6.401 26 H 0.112 0.888 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.224 0.776 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.550 -3.837 -18.268 19.475 hybrid contribution 0.806 -0.620 0.773 1.278 sum 6.357 -4.457 -17.495 19.140 Atomic orbital electron populations 1.22294 0.97526 1.00320 1.02008 1.17866 0.92134 0.92459 0.89248 1.22155 1.00146 0.97462 1.01360 1.20924 1.31119 1.11834 0.89441 0.92490 1.24931 0.95075 0.95053 0.98793 1.69810 1.36670 1.22761 1.23281 0.86625 0.79174 0.79673 0.82298 1.21272 1.20368 1.20320 1.30668 1.13834 1.10926 1.15204 1.05823 0.73875 0.75347 0.75701 1.93506 1.29916 1.86779 1.85974 1.93479 1.77138 1.38675 1.85326 1.58057 1.23775 1.50612 1.51116 1.21411 0.94008 0.85767 0.99153 1.21985 0.96363 0.97426 1.02156 1.21441 0.96245 0.98454 0.98902 1.21959 0.97853 0.93711 1.02940 1.20869 0.83583 0.95052 0.97433 0.89485 1.20235 0.78249 0.82527 0.88628 1.43479 1.62047 1.22174 1.12193 1.90786 1.57629 1.77113 1.14600 0.88783 0.95734 0.94717 0.94037 0.95907 0.89365 0.92907 0.83401 0.87747 0.88584 0.91357 0.90896 0.90624 0.91316 0.91752 0.89861 0.90668 0.77648 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 7.77 37.15 0.29 -4.04 16 2 C 0.09 2.25 0.52 -155.66 -0.08 2.17 16 3 C -0.15 -4.12 7.78 37.16 0.29 -3.84 16 4 C -0.49 -13.91 8.01 -34.44 -0.28 -14.19 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -25.47 9.35 55.43 0.52 -24.95 16 8 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C -0.57 -12.74 4.66 37.16 0.17 -12.57 16 13 S 2.59 52.69 3.77 -107.50 -0.41 52.29 16 14 O -0.97 -21.75 14.23 -57.54 -0.82 -22.57 16 15 O -0.96 -20.79 11.62 -66.89 -0.78 -21.57 16 16 N -1.00 -14.88 3.21 -107.46 -0.35 -15.22 16 17 C 0.12 1.47 6.33 -3.70 -0.02 1.44 16 18 C -0.14 -1.34 6.08 -26.61 -0.16 -1.50 16 19 C -0.11 -0.92 5.88 -26.69 -0.16 -1.08 16 20 C -0.13 -1.25 5.37 -26.39 -0.14 -1.40 16 21 C 0.14 1.72 3.30 -68.53 -0.23 1.49 16 22 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 23 C 0.52 7.74 4.34 -10.98 -0.05 7.69 16 24 N -0.84 -9.25 8.86 31.22 0.28 -8.97 16 25 O -0.52 -10.12 12.52 -17.94 -0.22 -10.34 16 26 H 0.09 2.65 6.07 -51.93 -0.32 2.33 16 27 H 0.02 0.62 5.46 -51.93 -0.28 0.33 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.02 0.58 5.46 -51.93 -0.28 0.29 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.15 3.32 5.44 -51.92 -0.28 3.04 16 34 H 0.10 2.14 8.14 -51.93 -0.42 1.71 16 35 H 0.10 1.26 7.00 -51.93 -0.36 0.90 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 42 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.40 2.81 8.69 -40.82 -0.35 2.46 16 44 H 0.41 4.41 8.93 -40.82 -0.36 4.05 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -35.48 338.10 -8.90 -44.38 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.74 Total: 9.33 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -0.45 Total: -24.15 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.45 Total: -49.14 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -1.82 Total: -54.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.69 SS G_CDS: -0.41 Total: 52.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.48 -8.90 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408459712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.058 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds