Wall clock time and date at job start Tue Mar 31 2020 04:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 S 1.81405 * 109.47264 * 239.99796 * 2 1 3 6 6 O 1.42096 * 110.54560 * 171.62560 * 5 2 1 7 7 O 1.42101 * 110.54258 * 308.37914 * 5 2 1 8 8 N 1.65601 * 104.44638 * 59.99979 * 5 2 1 9 9 C 1.46925 * 120.63408 * 269.72511 * 8 5 2 10 10 C 1.52770 * 109.00508 * 233.58255 * 9 8 5 11 11 C 1.53038 * 109.38328 * 305.58610 * 10 9 8 12 12 N 1.46500 * 109.45970 * 181.26510 * 11 10 9 13 13 C 1.34771 * 120.00450 * 84.92714 * 12 11 10 14 14 O 1.21690 * 120.00049 * 0.02562 * 13 12 11 15 15 C 1.46372 * 120.00158 * 180.02562 * 13 12 11 16 16 H 1.07998 * 120.00254 * 359.97438 * 15 13 12 17 17 C 1.40057 * 120.00125 * 180.02562 * 15 13 12 18 18 N 1.30674 * 119.99466 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00038 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47352 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47048 * 120.00049 * 19 17 15 22 22 H 1.48501 * 109.47105 * 239.99866 * 19 17 15 23 23 C 1.53039 * 109.53925 * 61.23982 * 11 10 9 24 24 C 1.46933 * 120.63004 * 90.00142 * 8 5 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.08997 * 109.58684 * 353.41378 * 9 8 5 35 35 H 1.08991 * 109.59005 * 113.84310 * 9 8 5 36 36 H 1.08998 * 109.55952 * 185.54546 * 10 9 8 37 37 H 1.08997 * 109.35724 * 65.49947 * 10 9 8 38 38 H 1.09000 * 109.44847 * 301.22480 * 11 10 9 39 39 H 0.97006 * 119.99460 * 264.93611 * 12 11 10 40 40 H 0.97001 * 119.99388 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.49693 * 178.68053 * 23 11 10 42 42 H 1.08998 * 109.52179 * 58.60673 * 23 11 10 43 43 H 1.09008 * 109.58750 * 246.15908 * 24 8 5 44 44 H 1.09000 * 109.58663 * 6.43868 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 16 2.1347 -0.8552 -1.4811 6 8 3.5420 -0.7030 -1.6052 7 8 1.5220 -2.1313 -1.6051 8 7 1.5165 0.0191 -2.7443 9 6 0.2074 -0.3193 -3.3194 10 6 0.3610 -0.5115 -4.8271 11 6 1.0117 0.7336 -5.4342 12 7 1.1322 0.5634 -6.8843 13 6 0.0945 0.8705 -7.6874 14 8 -0.9426 1.2896 -7.2082 15 6 0.2148 0.7000 -9.1362 16 1 1.1353 0.3285 -9.5616 17 6 -0.8635 1.0196 -9.9709 18 7 -1.9767 1.4706 -9.4562 19 14 -0.7097 0.8027 -11.8198 20 1 0.6425 0.2829 -12.1465 21 1 -1.7377 -0.1590 -12.2926 22 1 -0.9114 2.1122 -12.4904 23 6 2.4022 0.9322 -4.8267 24 6 2.2693 1.1443 -3.3154 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 -0.1614 -1.2416 -2.8706 35 1 -0.4966 0.4902 -3.1269 36 1 -0.6197 -0.6657 -5.2771 37 1 0.9902 -1.3808 -5.0183 38 1 0.3943 1.6062 -5.2211 39 1 1.9590 0.2296 -7.2663 40 1 -2.7237 1.6916 -10.0343 41 1 2.8743 1.8056 -5.2765 42 1 3.0127 0.0497 -5.0180 43 1 1.7368 2.0757 -3.1225 44 1 3.2595 1.1890 -2.8621 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427405375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:38 Heat of formation + Delta-G solvation = -123.049942 kcal Electronic energy + Delta-G solvation = -26166.585638 eV Core-core repulsion = 22438.515018 eV Total energy + Delta-G solvation = -3728.070620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.79785 -37.31003 -36.92739 -36.60774 -36.01835 -33.53989 -32.32428 -30.96054 -30.00326 -27.80761 -27.74676 -26.26129 -23.66565 -23.15364 -21.83838 -20.40923 -19.52719 -18.63782 -17.69612 -17.10504 -16.74074 -16.11944 -15.33706 -14.88680 -14.73830 -14.59730 -14.33774 -14.23822 -14.04999 -13.75279 -13.59662 -13.09551 -12.84609 -12.78083 -12.59832 -12.46745 -12.25437 -12.20500 -12.17771 -12.00917 -11.73177 -11.57193 -11.55716 -11.29482 -11.06832 -11.00359 -10.92573 -10.51575 -10.47216 -10.34864 -10.19813 -10.01254 -9.00338 -8.85272 -7.59514 -7.48640 -6.18030 -4.62986 0.10901 2.51851 3.13304 3.21856 3.26228 3.71750 3.84639 4.07402 4.11182 4.37868 4.54666 4.58864 4.62944 4.81026 5.05975 5.08464 5.17202 5.21397 5.26877 5.27903 5.31232 5.37112 5.38322 5.53795 5.57502 5.61209 5.67888 5.75743 5.77331 5.86732 5.90590 5.98164 6.12088 6.23217 6.43490 6.47518 6.77062 6.86220 7.44411 7.95409 8.13574 8.35404 9.03791 9.55856 10.60766 10.79874 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.002965 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.484625 B = 9441.197977 C = 9588.771312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.563 4.563 3 C -0.135 4.135 4 C -0.138 4.138 5 S 2.612 3.388 6 O -0.956 6.956 7 O -0.953 6.953 8 N -0.994 5.994 9 C 0.122 3.878 10 C -0.139 4.139 11 C 0.159 3.841 12 N -0.764 5.764 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.137 4.137 24 C 0.123 3.877 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.380 0.620 40 H 0.267 0.733 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -0.885 19.633 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.653 4.653 3 C -0.193 4.193 4 C -0.196 4.196 5 S 2.705 3.295 6 O -0.946 6.946 7 O -0.943 6.943 8 N -0.833 5.833 9 C -0.003 4.003 10 C -0.180 4.180 11 C 0.052 3.948 12 N -0.417 5.417 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.177 4.177 24 C -0.002 4.002 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.211 0.789 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.028 -1.254 19.893 21.135 hybrid contribution 0.081 0.213 -0.773 0.805 sum 7.109 -1.041 19.120 20.426 Atomic orbital electron populations 1.21723 0.89382 1.03817 1.04423 1.30152 1.07053 1.09456 1.18592 1.21713 1.01830 0.91336 1.04379 1.21709 1.01683 1.00408 0.95846 1.05221 0.74331 0.74638 0.75334 1.93555 1.29207 1.86601 1.85258 1.93569 1.78145 1.37480 1.85155 1.57617 1.30458 1.47459 1.47728 1.21455 0.82569 1.01042 0.95265 1.22220 1.02956 0.99521 0.93292 1.20384 0.94241 0.97133 0.83006 1.46201 1.18017 1.73349 1.04167 1.18196 0.81598 0.77202 0.87009 1.90586 1.28974 1.50187 1.76635 1.20940 1.00485 1.46779 0.90061 0.91488 1.25701 0.94543 0.92838 1.00106 1.70032 1.02396 1.31437 1.35841 0.86339 0.79058 0.78356 0.83125 1.18815 1.20206 1.20224 1.22140 0.98424 1.02778 0.94350 1.21462 0.96029 0.88183 0.94532 0.90699 0.90628 0.90869 0.90633 0.90935 0.90789 0.91123 0.91160 0.90069 0.89230 0.91177 0.89842 0.92032 0.90541 0.78915 0.92245 0.90373 0.91366 0.91185 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.23 37.16 0.31 -0.73 16 2 C -0.56 -4.74 1.05 -90.62 -0.09 -4.84 16 3 C -0.13 -0.96 8.22 37.15 0.31 -0.65 16 4 C -0.14 -1.00 8.48 37.16 0.32 -0.69 16 5 S 2.61 31.92 4.33 -107.50 -0.47 31.46 16 6 O -0.96 -13.82 16.48 -57.54 -0.95 -14.77 16 7 O -0.95 -14.41 16.46 -57.54 -0.95 -15.36 16 8 N -0.99 -12.11 2.76 -113.76 -0.31 -12.42 16 9 C 0.12 1.63 5.32 -3.93 -0.02 1.60 16 10 C -0.14 -2.38 5.64 -26.83 -0.15 -2.53 16 11 C 0.16 2.88 2.42 -67.89 -0.16 2.71 16 12 N -0.76 -16.58 5.07 -55.18 -0.28 -16.86 16 13 C 0.56 15.41 7.71 -12.99 -0.10 15.31 16 14 O -0.58 -18.16 14.68 5.20 0.08 -18.08 16 15 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 16 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 17 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 18 N -0.77 -22.79 11.83 55.55 0.66 -22.13 16 19 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.14 -1.92 5.55 -26.62 -0.15 -2.07 16 24 C 0.12 1.42 5.32 -3.71 -0.02 1.40 16 25 H 0.07 0.56 6.59 -51.93 -0.34 0.22 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.14 6.85 -51.93 -0.36 0.78 16 35 H 0.07 0.84 7.80 -51.93 -0.40 0.44 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 39 H 0.38 7.39 8.58 -40.82 -0.35 7.04 16 40 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.68 7.79 -51.92 -0.40 0.28 16 44 H 0.09 0.95 6.86 -51.93 -0.36 0.59 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -36.46 359.72 -9.17 -45.64 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.14 Total: 5.78 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.21 Total: -3.74 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.06 Total: -51.41 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.82 Total: -48.21 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 31.92 SS G_CDS: -0.47 Total: 31.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.46 -9.17 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427405375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.413 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds