Wall clock time and date at job start Tue Mar 31 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47559 * 2 1 4 4 C 1.53004 * 109.46895 * 120.00206 * 2 1 3 5 5 H 1.08998 * 109.47812 * 55.08173 * 4 2 1 6 6 N 1.46506 * 109.47047 * 295.08096 * 4 2 1 7 7 S 1.65601 * 119.99662 * 111.43007 * 6 4 2 8 8 C 1.81400 * 104.44834 * 62.73148 * 7 6 4 9 9 O 1.42105 * 104.27421 * 178.79827 * 7 6 4 10 10 O 1.42094 * 104.28133 * 306.65760 * 7 6 4 11 11 C 1.50702 * 109.47136 * 175.08609 * 4 2 1 12 12 O 1.21290 * 119.99880 * 108.58063 * 11 4 2 13 13 N 1.34777 * 120.00148 * 288.58258 * 11 4 2 14 14 C 1.46494 * 120.00108 * 184.78288 * 13 11 4 15 15 C 1.53000 * 109.47143 * 185.11102 * 14 13 11 16 16 C 1.50704 * 115.54954 * 306.44076 * 15 14 13 17 17 H 1.07999 * 119.99761 * 153.81746 * 16 15 14 18 18 C 1.37874 * 120.00009 * 333.82293 * 16 15 14 19 19 N 1.31519 * 119.99961 * 163.84309 * 18 16 15 20 20 Si 1.86800 * 120.00096 * 343.83901 * 18 16 15 21 21 H 1.48503 * 109.46911 * 90.29374 * 20 18 16 22 22 H 1.48498 * 109.47546 * 210.29420 * 20 18 16 23 23 H 1.48502 * 109.47060 * 330.29514 * 20 18 16 24 24 C 1.52992 * 117.50042 * 160.77247 * 15 14 13 25 25 C 1.53000 * 117.49913 * 92.11177 * 15 14 13 26 26 H 1.09002 * 109.47402 * 297.53697 * 1 2 3 27 27 H 1.09002 * 109.47218 * 57.53154 * 1 2 3 28 28 H 1.09000 * 109.47398 * 177.53973 * 1 2 3 29 29 H 1.09001 * 109.47023 * 239.99324 * 2 1 3 30 30 H 1.08996 * 109.47605 * 184.67859 * 3 2 1 31 31 H 1.09002 * 109.46872 * 304.67951 * 3 2 1 32 32 H 1.09000 * 109.47041 * 64.67981 * 3 2 1 33 33 H 0.97001 * 119.99926 * 291.43636 * 6 4 2 34 34 H 1.09001 * 109.47238 * 59.99408 * 8 7 6 35 35 H 1.08999 * 109.47501 * 180.02562 * 8 7 6 36 36 H 1.09007 * 109.46951 * 299.99276 * 8 7 6 37 37 H 0.97000 * 119.99876 * 4.78374 * 13 11 4 38 38 H 1.08997 * 109.47193 * 305.10844 * 14 13 11 39 39 H 1.08997 * 109.47371 * 65.11316 * 14 13 11 40 40 H 0.97006 * 119.99702 * 180.02562 * 19 18 16 41 41 H 1.09001 * 117.50298 * 0.02562 * 24 15 14 42 42 H 1.09004 * 117.50195 * 145.01904 * 24 15 14 43 43 H 1.09003 * 117.49356 * 214.98373 * 25 15 14 44 44 H 1.08993 * 117.49642 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6065 -1.7204 1.2945 6 7 1.6506 0.0343 2.4426 7 16 0.5251 -0.5879 3.4858 8 6 1.2861 -2.1080 4.1187 9 8 0.4258 0.3862 4.5157 10 8 -0.5883 -0.8949 2.6580 11 6 3.5420 -0.8276 1.1900 12 8 4.2272 -0.1561 1.9320 13 7 4.1239 -1.6688 0.3124 14 6 5.5775 -1.8506 0.3255 15 6 5.9896 -2.7499 -0.8416 16 6 5.2757 -4.0745 -0.9250 17 1 5.1688 -4.5712 -1.8781 18 6 4.7590 -4.6522 0.2152 19 7 3.8763 -5.6224 0.1188 20 14 5.3127 -4.0569 1.8971 21 1 4.4191 -2.9622 2.3535 22 1 5.2520 -5.1815 2.8650 23 1 6.7071 -3.5538 1.8097 24 6 7.4538 -2.7076 -1.2833 25 6 6.3715 -2.0691 -2.1575 26 1 -0.3634 0.4751 0.9112 27 1 -0.3634 0.5517 -0.8670 28 1 -0.3634 -1.0267 -0.0441 29 1 1.8933 -0.5139 -0.8899 30 1 3.1268 1.4436 -0.0838 31 1 1.6099 1.9799 -0.8451 32 1 1.7468 1.9315 0.9289 33 1 2.0521 0.8990 2.6214 34 1 2.2195 -1.8633 4.6256 35 1 0.6060 -2.5896 4.8213 36 1 1.4899 -2.7850 3.2890 37 1 3.5803 -2.1539 -0.3280 38 1 6.0658 -0.8811 0.2271 39 1 5.8772 -2.3146 1.2651 40 1 3.5125 -6.0286 0.9212 41 1 8.1237 -2.0393 -0.7422 42 1 7.9006 -3.6377 -1.6347 43 1 6.1066 -2.5795 -3.0835 44 1 6.3288 -0.9806 -2.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431155921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:52 Heat of formation + Delta-G solvation = -95.040061 kcal Electronic energy + Delta-G solvation = -26946.270878 eV Core-core repulsion = 23219.414857 eV Total energy + Delta-G solvation = -3726.856021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29107 -39.01247 -38.26762 -37.53963 -37.03177 -35.11665 -34.34005 -33.55077 -30.42747 -29.58971 -28.01096 -27.84953 -26.37956 -23.09358 -22.09431 -21.20559 -20.94580 -20.44970 -19.23266 -18.78391 -17.77854 -17.75450 -17.51806 -17.15077 -16.62997 -16.21076 -15.79443 -15.51967 -15.43534 -14.89682 -14.79071 -14.47837 -14.19616 -14.14034 -13.90015 -13.82219 -13.46294 -13.23435 -13.18808 -13.04527 -12.92089 -12.72084 -12.51124 -12.39428 -12.16591 -12.15163 -11.89197 -11.77075 -11.64492 -11.45942 -11.32453 -11.16767 -10.70944 -10.49773 -10.24607 -9.83247 -8.36039 -6.27411 -0.77961 1.24711 1.38309 1.40016 1.48661 1.62827 2.25131 2.26031 2.73576 2.84236 3.16451 3.47628 3.57284 3.72863 3.78781 3.88695 3.96044 3.99482 4.15602 4.20186 4.31375 4.45146 4.51048 4.61856 4.69033 4.79938 4.82563 4.89427 4.94173 4.95481 5.02979 5.09680 5.22376 5.22559 5.42538 5.47005 5.54726 5.57986 5.67088 5.93920 6.32168 6.60997 6.73053 7.21208 7.29417 8.78494 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.005383 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.888395 B = 5199.996557 C = 5896.098653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.139 3.861 5 H 0.122 0.878 6 N -1.094 6.094 7 S 2.628 3.372 8 C -0.676 4.676 9 O -0.987 6.987 10 O -0.964 6.964 11 C 0.502 3.498 12 O -0.570 6.570 13 N -0.701 5.701 14 C 0.139 3.861 15 C -0.031 4.031 16 C -0.485 4.485 17 H 0.047 0.953 18 C 0.051 3.949 19 N -0.918 5.918 20 Si 0.935 3.065 21 H -0.259 1.259 22 H -0.316 1.316 23 H -0.272 1.272 24 C -0.198 4.198 25 C -0.165 4.165 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.426 0.574 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 10.259 2.653 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.027 3.973 5 H 0.140 0.860 6 N -0.853 5.853 7 S 2.722 3.278 8 C -0.828 4.828 9 O -0.978 6.978 10 O -0.954 6.954 11 C 0.287 3.713 12 O -0.450 6.450 13 N -0.353 5.353 14 C 0.016 3.984 15 C -0.032 4.032 16 C -0.522 4.522 17 H 0.065 0.935 18 C -0.150 4.150 19 N -0.555 5.555 20 Si 0.767 3.233 21 H -0.185 1.185 22 H -0.245 1.245 23 H -0.199 1.199 24 C -0.236 4.236 25 C -0.202 4.202 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.264 0.736 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.149 0.851 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.157 10.794 3.440 12.894 hybrid contribution 1.096 -0.759 0.683 1.498 sum -5.061 10.035 4.123 11.972 Atomic orbital electron populations 1.21867 0.92678 1.02852 1.02651 1.21457 0.97769 0.97317 0.95167 1.21803 1.00327 0.95215 1.02886 1.20853 0.90468 0.97695 0.88242 0.86050 1.55322 1.62535 1.31864 1.35553 1.04231 0.74010 0.76362 0.73189 1.30556 1.15585 1.22107 1.14538 1.93575 1.86480 1.58690 1.59054 1.93617 1.49506 1.85840 1.66483 1.21181 0.91340 0.78925 0.79835 1.90623 1.65695 1.45396 1.43276 1.46037 1.08351 1.44271 1.36615 1.21143 0.81119 0.98583 0.97548 1.19454 0.95372 0.95149 0.93262 1.20385 1.34311 1.03026 0.94484 0.93494 1.25392 0.93544 0.95001 1.01084 1.70042 1.27591 1.27476 1.30402 0.86330 0.79923 0.75841 0.81162 1.18501 1.24539 1.19877 1.23132 0.92780 1.02156 1.05561 1.22888 1.03778 0.98860 0.94696 0.92294 0.91084 0.92248 0.88725 0.93838 0.90620 0.92107 0.73638 0.84758 0.82599 0.85104 0.74620 0.90924 0.93858 0.92201 0.89153 0.90068 0.89939 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.13 71.98 0.59 -2.49 16 2 C -0.10 -2.15 2.73 -10.80 -0.03 -2.18 16 3 C -0.14 -3.06 8.74 71.98 0.63 -2.43 16 4 C 0.14 3.58 2.22 44.25 0.10 3.68 16 5 H 0.12 2.84 7.31 -2.39 -0.02 2.82 16 6 N -1.09 -26.07 3.90 -172.50 -0.67 -26.74 16 7 S 2.63 60.21 5.92 -56.49 -0.33 59.87 16 8 C -0.68 -13.16 10.77 113.37 1.22 -11.94 16 9 O -0.99 -28.18 18.08 -127.65 -2.31 -30.49 16 10 O -0.96 -25.31 15.20 -127.65 -1.94 -27.25 16 11 C 0.50 16.32 5.16 87.66 0.45 16.77 16 12 O -0.57 -21.23 16.23 -3.06 -0.05 -21.28 16 13 N -0.70 -24.44 3.93 -463.07 -1.82 -26.26 16 14 C 0.14 5.35 4.38 86.38 0.38 5.73 16 15 C -0.03 -1.26 1.73 -52.93 -0.09 -1.35 16 16 C -0.48 -23.77 8.90 25.60 0.23 -23.55 16 17 H 0.05 2.58 8.06 -2.91 -0.02 2.56 16 18 C 0.05 2.56 5.05 84.65 0.43 2.98 16 19 N -0.92 -49.48 13.96 21.45 0.30 -49.18 16 20 Si 0.94 41.70 23.34 68.60 1.60 43.30 16 21 H -0.26 -10.75 5.59 99.48 0.56 -10.19 16 22 H -0.32 -14.59 7.11 99.48 0.71 -13.89 16 23 H -0.27 -12.12 6.51 99.48 0.65 -11.47 16 24 C -0.20 -7.16 9.96 30.62 0.30 -6.86 16 25 C -0.16 -5.63 9.92 30.62 0.30 -5.33 16 26 H 0.06 1.36 6.05 -2.39 -0.01 1.34 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.04 7.53 -2.39 -0.02 1.02 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.24 6.69 -2.39 -0.02 1.23 16 33 H 0.43 9.84 7.41 -96.74 -0.72 9.12 16 34 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.13 2.60 7.64 -2.39 -0.02 2.59 16 37 H 0.42 14.33 7.79 -92.71 -0.72 13.60 16 38 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 39 H 0.04 1.84 2.60 -2.39 -0.01 1.84 16 40 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 41 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -65.27 356.30 -1.34 -66.62 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.63 Total: 38.38 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.51 Total: -26.96 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -2.19 Total: -102.18 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -4.30 Total: -79.02 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.60 Total: 43.30 kcal Atomic # 16 Polarization: 60.21 SS G_CDS: -0.33 Total: 59.87 kcal Total: -65.27 -1.34 -66.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431155921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.425 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds