Wall clock time and date at job start Tue Mar 31 2020 04:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 C 1.53009 * 109.46872 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.46814 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.54452 * 68.37838 * 5 4 3 7 7 O 1.42095 * 110.54628 * 291.62462 * 5 4 3 8 8 N 1.65604 * 104.44798 * 180.02562 * 5 4 3 9 9 C 1.46490 * 120.00036 * 65.00387 * 8 5 4 10 10 C 1.50698 * 109.47298 * 165.00115 * 9 8 5 11 11 O 1.21277 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46980 * 300.00421 * 1 2 3 27 27 H 1.09001 * 109.46520 * 60.00279 * 1 2 3 28 28 H 1.08998 * 109.46980 * 239.99579 * 2 1 3 29 29 H 1.09004 * 109.46848 * 120.00136 * 2 1 3 30 30 H 1.08998 * 109.47467 * 59.99877 * 3 2 1 31 31 H 1.09001 * 109.47125 * 299.99351 * 3 2 1 32 32 H 1.08998 * 109.46995 * 59.99808 * 4 3 2 33 33 H 1.09001 * 109.46895 * 299.99711 * 4 3 2 34 34 H 0.97006 * 119.99573 * 245.00208 * 8 5 4 35 35 H 1.09005 * 109.47287 * 44.99368 * 9 8 5 36 36 H 1.09009 * 109.47069 * 285.00078 * 9 8 5 37 37 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 39 39 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 40 40 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 41 41 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 42 42 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 43 43 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 44 44 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 16 4.1748 3.1526 -0.0001 6 8 3.8783 3.7869 1.2364 7 8 3.8793 3.7854 -1.2375 8 7 5.8245 3.0075 -0.0001 9 6 6.5072 2.4089 -1.1496 10 6 7.9798 2.7205 -1.0775 11 8 8.4161 3.3783 -0.1568 12 7 8.8120 2.2690 -2.0368 13 6 10.2436 2.5714 -1.9665 14 6 10.9375 2.0503 -3.2264 15 6 10.9336 0.5532 -3.3986 16 1 10.1704 0.0807 -3.9993 17 6 11.9076 -0.2129 -2.7941 18 7 12.8909 0.3683 -2.1423 19 14 11.8302 -2.0763 -2.9006 20 1 11.8789 -2.4931 -4.3250 21 1 12.9849 -2.6620 -2.1733 22 1 10.5653 -2.5551 -2.2875 23 6 10.8432 2.9070 -4.4906 24 6 12.1654 2.8154 -3.7246 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9338 0.9283 -0.8891 33 1 3.9330 0.9286 0.8909 34 1 6.3387 3.3191 0.7612 35 1 6.0938 2.8182 -2.0714 36 1 6.3633 1.3284 -1.1354 37 1 8.4630 1.7431 -2.7734 38 1 10.6742 2.0894 -1.0887 39 1 10.3840 3.6500 -1.8941 40 1 13.6145 -0.1660 -1.7792 41 1 10.7783 2.3878 -5.4468 42 1 10.2871 3.8422 -4.4244 43 1 12.4784 3.6903 -3.1549 44 1 12.9703 2.2359 -4.1764 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435233906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:46 Heat of formation + Delta-G solvation = -105.428551 kcal Electronic energy + Delta-G solvation = -24519.042933 eV Core-core repulsion = 20791.736434 eV Total energy + Delta-G solvation = -3727.306499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.37124 -37.27812 -36.83740 -36.25794 -36.06391 -34.71569 -33.47915 -32.03478 -30.89412 -28.06296 -25.86343 -24.77445 -24.72369 -21.73135 -21.23968 -20.12474 -19.54877 -19.42807 -18.04181 -17.14155 -16.61387 -16.36396 -16.00041 -15.85171 -15.31843 -15.16354 -14.73113 -14.38663 -14.30957 -13.91204 -13.70657 -13.24905 -13.22128 -13.01932 -12.66298 -12.28833 -12.18804 -12.15829 -12.11801 -11.99262 -11.82933 -11.70388 -11.64367 -11.10385 -11.04749 -11.02725 -10.78936 -10.61464 -10.29662 -9.84315 -9.67884 -9.44062 -9.12332 -8.57282 -8.39632 -8.19805 -6.14548 -4.25239 0.02596 2.48110 2.94570 3.20428 3.27319 3.27857 3.50901 3.69022 3.95737 4.12916 4.28106 4.39956 4.50558 4.73550 4.80212 4.99991 5.05475 5.12403 5.14769 5.19336 5.21475 5.29873 5.33789 5.45951 5.56945 5.63604 5.72698 5.85575 5.96243 6.27190 6.40003 6.47854 6.65141 6.75104 6.89284 7.06537 7.11982 7.31171 7.46951 7.73527 8.08995 8.25962 8.63494 8.76550 9.42362 10.92459 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002880 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.230736 B = 9721.526795 C =10859.681632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.633 4.633 5 S 2.616 3.384 6 O -0.956 6.956 7 O -0.955 6.955 8 N -1.107 6.107 9 C 0.093 3.907 10 C 0.503 3.497 11 O -0.549 6.549 12 N -0.698 5.698 13 C 0.162 3.838 14 C 0.023 3.977 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.210 4.210 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.428 0.572 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.404 0.596 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 -1.006 2.502 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.762 4.762 5 S 2.708 3.292 6 O -0.946 6.946 7 O -0.945 6.945 8 N -0.869 5.869 9 C -0.037 4.037 10 C 0.286 3.714 11 O -0.427 6.427 12 N -0.347 5.347 13 C 0.039 3.961 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.266 0.734 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.630 0.177 3.167 19.885 hybrid contribution 0.485 -1.994 -0.110 2.055 sum -19.145 -1.817 3.057 19.472 Atomic orbital electron populations 1.21818 0.95446 1.02028 1.02169 1.21484 0.96087 0.95234 1.02774 1.21374 0.90165 0.99965 1.03748 1.30673 1.06776 1.26633 1.12099 1.04845 0.72814 0.77173 0.74375 1.93612 1.82968 1.72915 1.45119 1.93605 1.83353 1.71983 1.45545 1.55317 1.25603 1.77926 1.28087 1.21128 0.93005 0.99253 0.90314 1.20216 0.87732 0.80494 0.82998 1.90663 1.77456 1.40263 1.34362 1.45943 1.09397 1.53534 1.25815 1.21060 0.77492 0.97261 1.00262 1.19034 0.97210 0.93113 0.88463 1.20312 1.13340 0.88732 1.31656 0.92168 1.24999 0.95345 0.98410 0.94341 1.69974 1.09928 1.35663 1.35402 0.86678 0.77654 0.85563 0.78182 1.20251 1.21276 1.20181 1.23030 1.02974 1.01006 0.97748 1.22473 0.91697 1.00723 1.03106 0.92396 0.92480 0.92427 0.91381 0.91483 0.90285 0.90183 0.84741 0.84611 0.73400 0.87421 0.88858 0.76194 0.91239 0.93924 0.92734 0.90326 0.91645 0.91794 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.11 -0.77 5.22 -26.73 -0.14 -0.90 16 4 C -0.63 -4.18 6.07 37.16 0.23 -3.96 16 5 S 2.62 27.22 5.46 -107.50 -0.59 26.64 16 6 O -0.96 -13.01 18.08 -57.54 -1.04 -14.05 16 7 O -0.96 -12.77 17.49 -57.54 -1.01 -13.77 16 8 N -1.11 -12.67 5.82 -11.66 -0.07 -12.74 16 9 C 0.09 1.06 6.61 -5.20 -0.03 1.02 16 10 C 0.50 8.27 7.90 -10.98 -0.09 8.19 16 11 O -0.55 -11.03 15.73 5.56 0.09 -10.95 16 12 N -0.70 -12.13 5.48 -60.30 -0.33 -12.46 16 13 C 0.16 3.45 5.50 -4.05 -0.02 3.43 16 14 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 15 C -0.50 -12.27 8.59 -34.44 -0.30 -12.57 16 16 H 0.06 1.42 7.82 -52.48 -0.41 1.01 16 17 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 18 N -0.87 -23.43 12.65 55.43 0.70 -22.73 16 19 Si 0.89 19.69 29.54 -169.99 -5.02 14.66 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.21 -4.20 9.96 -26.69 -0.27 -4.47 16 24 C -0.14 -3.15 9.14 -26.69 -0.24 -3.39 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.43 5.38 7.67 -34.47 -0.26 5.12 16 35 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 36 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.40 6.17 8.33 -40.82 -0.34 5.83 16 38 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.04 0.91 8.09 -51.92 -0.42 0.49 16 40 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -33.24 383.36 -9.78 -43.02 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.31 Total: 8.56 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.98 Total: -11.96 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.30 Total: -47.92 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.96 Total: -38.77 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 27.22 SS G_CDS: -0.59 Total: 26.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.24 -9.78 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435233906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.411 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds