Wall clock time and date at job start Tue Mar 31 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.52745 * 2 1 4 4 C 1.53046 * 109.49842 * 239.91709 * 2 1 3 5 5 C 1.53043 * 109.53700 * 301.41855 * 4 2 1 6 6 H 1.08998 * 109.49941 * 58.61981 * 5 4 2 7 7 C 1.53004 * 109.49393 * 178.68072 * 5 4 2 8 8 C 1.53187 * 109.31215 * 298.63008 * 5 4 2 9 9 N 1.46931 * 108.77309 * 54.63979 * 8 5 4 10 10 S 1.65604 * 120.62885 * 126.41385 * 9 8 5 11 11 O 1.42107 * 106.39685 * 203.53643 * 10 9 8 12 12 O 1.42094 * 106.40073 * 336.45795 * 10 9 8 13 13 N 1.65598 * 107.21780 * 89.99940 * 10 9 8 14 14 C 1.47066 * 136.05508 * 269.62595 * 13 10 9 15 15 C 1.53761 * 87.88954 * 152.96671 * 14 13 10 16 16 O 1.42905 * 114.39154 * 272.67852 * 15 14 13 17 17 C 1.50702 * 114.09078 * 139.77733 * 15 14 13 18 18 H 1.07999 * 120.00105 * 266.56400 * 17 15 14 19 19 C 1.37877 * 119.99715 * 86.56097 * 17 15 14 20 20 N 1.31513 * 120.00059 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99823 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47129 * 60.00024 * 21 19 17 23 23 H 1.48500 * 109.46778 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46765 * 299.99837 * 21 19 17 25 25 C 1.47065 * 136.05896 * 89.99913 * 13 10 9 26 26 C 1.46923 * 118.73730 * 306.38501 * 9 8 5 27 27 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47538 * 300.08299 * 1 2 3 29 29 H 1.09004 * 109.47024 * 60.08285 * 1 2 3 30 30 H 1.08998 * 109.45610 * 61.43657 * 4 2 1 31 31 H 1.08997 * 109.46079 * 181.39776 * 4 2 1 32 32 H 1.09000 * 109.46682 * 60.00080 * 7 5 4 33 33 H 1.08999 * 109.46678 * 179.97438 * 7 5 4 34 34 H 1.08991 * 109.47219 * 299.99834 * 7 5 4 35 35 H 1.09001 * 109.58881 * 174.42505 * 8 5 4 36 36 H 1.08996 * 109.58907 * 294.71313 * 8 5 4 37 37 H 1.09003 * 113.46695 * 267.69412 * 14 13 10 38 38 H 1.08995 * 113.46963 * 38.13859 * 14 13 10 39 39 H 0.96697 * 113.99750 * 273.58096 * 16 15 14 40 40 H 0.97001 * 119.99713 * 180.02562 * 20 19 17 41 41 H 1.08998 * 113.47176 * 321.86439 * 25 13 10 42 42 H 1.09001 * 113.46798 * 92.24689 * 25 13 10 43 43 H 1.08996 * 109.59375 * 293.82604 * 26 9 8 44 44 H 1.09006 * 109.58686 * 173.39604 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 1.5029 -2.1558 -1.2660 6 1 0.4132 -2.1355 -1.2547 7 6 1.9873 -2.8675 -2.5309 8 6 2.0139 -2.9041 -0.0308 9 7 1.6514 -2.1382 1.1695 10 16 0.8198 -2.8557 2.4089 11 8 0.1608 -1.8090 3.1087 12 8 0.1342 -3.9644 1.8432 13 7 1.9414 -3.4828 3.4534 14 6 2.6429 -4.7660 3.6085 15 6 3.7880 -3.9935 4.2838 16 8 4.7644 -3.4747 3.3784 17 6 4.3886 -4.6986 5.4726 18 1 4.0241 -4.4868 6.4669 19 6 5.4034 -5.6141 5.2908 20 7 5.8476 -5.8716 4.0800 21 14 6.1474 -6.4886 6.7642 22 1 5.0909 -7.2592 7.4679 23 1 7.2120 -7.4159 6.3038 24 1 6.7303 -5.4864 7.6922 25 6 2.6695 -3.0038 4.6380 26 6 2.0413 -0.7239 1.2496 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5151 0.8892 29 1 -0.3633 0.5126 -0.8908 30 1 1.6988 -0.1958 -2.1389 31 1 3.1305 -0.7445 -1.2353 32 1 3.0770 -2.8886 -2.5411 33 1 1.6043 -3.8880 -2.5428 34 1 1.6259 -2.3332 -3.4094 35 1 1.5553 -3.8919 0.0137 36 1 3.0975 -3.0065 -0.0880 37 1 2.1344 -5.4606 4.2773 38 1 2.9257 -5.2235 2.6605 39 1 5.4675 -4.1005 3.1573 40 1 6.5612 -6.5160 3.9521 41 1 2.9750 -1.9599 4.5672 42 1 2.1675 -3.2330 5.5781 43 1 3.1274 -0.6464 1.2980 44 1 1.6006 -0.2731 2.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440075736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:21 Heat of formation + Delta-G solvation = -98.710793 kcal Electronic energy + Delta-G solvation = -26977.322734 eV Core-core repulsion = 23250.307538 eV Total energy + Delta-G solvation = -3727.015195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.15845 -38.58660 -36.84356 -35.42276 -33.95022 -33.40373 -33.00898 -32.15220 -27.82457 -27.02493 -26.70246 -25.05221 -24.71493 -24.30310 -21.64856 -19.75102 -19.18863 -18.15145 -17.76548 -17.12692 -16.59665 -15.88822 -15.21353 -15.01544 -14.74921 -14.39851 -14.23836 -14.12174 -13.90578 -13.58420 -13.15637 -13.01723 -12.86738 -12.30707 -12.22725 -12.10408 -11.94459 -11.73439 -11.69286 -11.64138 -11.60078 -11.49960 -11.33526 -11.05374 -11.03456 -10.81091 -10.72283 -10.48851 -10.41413 -10.23825 -10.14084 -9.32315 -8.87495 -8.69743 -8.50163 -8.04450 -6.36889 -4.46390 0.98528 3.17861 3.23528 3.25098 3.30775 3.91698 4.20103 4.55110 4.60932 4.77187 4.82365 4.89261 5.01661 5.16985 5.28640 5.36137 5.48247 5.56205 5.60729 5.62150 5.69874 5.77689 5.89707 5.96479 5.99063 6.01585 6.03796 6.06522 6.13482 6.15267 6.20406 6.33545 6.36402 6.42841 6.44242 6.62174 6.74585 6.96237 7.05289 7.53757 7.68835 7.86713 8.56432 9.24149 9.51282 10.69451 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.004251 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.328450 B = 6584.393442 C = 7051.036713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.105 4.105 5 C -0.106 4.106 6 H 0.076 0.924 7 C -0.145 4.145 8 C 0.127 3.873 9 N -0.999 5.999 10 S 2.805 3.195 11 O -0.987 6.987 12 O -0.986 6.986 13 N -1.049 6.049 14 C 0.106 3.894 15 C 0.242 3.758 16 O -0.571 6.571 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.135 3.865 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 7.735 -9.746 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.143 4.143 5 C -0.127 4.127 6 H 0.094 0.906 7 C -0.203 4.203 8 C 0.001 3.999 9 N -0.837 5.837 10 S 2.818 3.182 11 O -0.971 6.971 12 O -0.971 6.971 13 N -0.891 5.891 14 C -0.020 4.020 15 C 0.198 3.802 16 O -0.384 6.384 17 C -0.573 4.573 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.735 3.265 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.010 3.990 26 C 0.000 4.000 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.259 8.193 -9.877 14.278 hybrid contribution 1.059 -1.046 0.551 1.587 sum -5.200 7.147 -9.326 12.849 Atomic orbital electron populations 1.21883 0.95182 1.02034 1.01586 1.21436 0.96332 0.99159 0.95329 0.90238 1.21559 1.00645 0.94965 0.97124 1.21515 1.01085 0.95399 0.94653 0.90584 1.21777 1.01500 1.00431 0.96631 1.21424 1.00713 0.94490 0.83256 1.58050 1.75120 1.18799 1.31738 1.00976 0.72563 0.72488 0.72202 1.93540 1.72367 1.57953 1.73260 1.93544 1.71235 1.53627 1.78670 1.60115 1.60798 1.26966 1.41218 1.23630 0.93064 0.85130 1.00163 1.19718 0.84621 0.88332 0.87520 1.85995 1.40569 1.45838 1.66026 1.21492 1.19338 1.22902 0.93550 0.91071 1.25064 0.95746 0.95712 0.96496 1.69250 1.28684 1.35253 1.20821 0.86395 0.78797 0.79264 0.82069 1.19915 1.21060 1.19897 1.22765 0.90734 0.99215 0.86335 1.21418 1.00253 0.79804 0.98522 0.92659 0.92322 0.92810 0.92023 0.91620 0.92376 0.92396 0.92607 0.89457 0.91145 0.90533 0.92240 0.75094 0.91616 0.92035 0.89957 0.91161 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.70 37.16 0.32 -1.43 16 2 C -0.10 -1.15 3.21 -90.50 -0.29 -1.44 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.10 4.71 -26.68 -0.13 -1.22 16 5 C -0.11 -1.23 2.53 -90.50 -0.23 -1.46 16 6 H 0.08 0.92 6.34 -51.93 -0.33 0.59 16 7 C -0.15 -1.41 9.20 37.16 0.34 -1.07 16 8 C 0.13 1.82 5.76 -3.71 -0.02 1.80 16 9 N -1.00 -15.91 2.78 -113.52 -0.32 -16.22 16 10 S 2.81 54.08 6.72 -107.50 -0.72 53.36 16 11 O -0.99 -20.30 16.73 -57.17 -0.96 -21.26 16 12 O -0.99 -20.94 16.73 -57.17 -0.96 -21.90 16 13 N -1.05 -21.62 4.29 -125.00 -0.54 -22.15 16 14 C 0.11 2.35 8.16 -8.37 -0.07 2.28 16 15 C 0.24 5.67 1.59 -91.12 -0.14 5.52 16 16 O -0.57 -13.92 13.55 -35.23 -0.48 -14.40 16 17 C -0.53 -13.23 8.69 -34.44 -0.30 -13.53 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 20 N -0.90 -22.58 11.01 55.43 0.61 -21.97 16 21 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C 0.13 2.81 8.14 -8.51 -0.07 2.74 16 26 C 0.13 1.75 5.87 -3.71 -0.02 1.72 16 27 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.34 6.92 -51.93 -0.36 0.98 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.39 9.87 6.33 45.56 0.29 10.16 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.28 6.92 -51.93 -0.36 0.92 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -28.32 357.11 -10.22 -38.54 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.53 Total: 10.72 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.70 Total: -4.41 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.24 Total: -60.35 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -2.39 Total: -57.56 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.72 Total: 53.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -10.22 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440075736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.167 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds