Wall clock time and date at job start Tue Mar 31 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.52885 * 2 1 4 4 C 1.53041 * 109.49921 * 239.91724 * 2 1 3 5 5 C 1.53039 * 109.54369 * 178.68291 * 4 2 1 6 6 H 1.09001 * 109.49723 * 301.42572 * 5 4 2 7 7 C 1.52998 * 109.50062 * 181.35460 * 5 4 2 8 8 C 1.52764 * 109.38087 * 61.24137 * 5 4 2 9 9 N 1.46928 * 109.01020 * 305.59323 * 8 5 4 10 10 S 1.65596 * 120.63123 * 233.58004 * 9 8 5 11 11 O 1.42096 * 106.40054 * 156.17758 * 10 9 8 12 12 O 1.42103 * 106.40091 * 23.26183 * 10 9 8 13 13 N 1.65593 * 107.22091 * 269.72215 * 10 9 8 14 14 C 1.47584 * 134.49803 * 89.99566 * 13 10 9 15 15 C 1.53946 * 86.12025 * 155.36171 * 14 13 10 16 16 O 1.42897 * 113.74068 * 269.15867 * 15 14 13 17 17 C 1.50700 * 113.74246 * 137.95222 * 15 14 13 18 18 H 1.07998 * 119.99659 * 4.91778 * 17 15 14 19 19 C 1.37870 * 120.00275 * 184.91298 * 17 15 14 20 20 N 1.31521 * 119.99939 * 13.83955 * 19 17 15 21 21 Si 1.86793 * 120.00241 * 193.83635 * 19 17 15 22 22 H 1.48503 * 109.47305 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47166 * 299.99995 * 21 19 17 24 24 H 1.48499 * 109.46987 * 59.99962 * 21 19 17 25 25 C 1.47585 * 134.49149 * 270.00400 * 13 10 9 26 26 C 1.46927 * 118.73768 * 53.30558 * 9 8 5 27 27 H 1.08998 * 109.46747 * 299.91602 * 1 2 3 28 28 H 1.09003 * 109.46646 * 59.91852 * 1 2 3 29 29 H 1.09001 * 109.47247 * 179.91698 * 1 2 3 30 30 H 1.08999 * 109.46575 * 298.70889 * 4 2 1 31 31 H 1.09011 * 109.45506 * 58.68043 * 4 2 1 32 32 H 1.08990 * 109.47199 * 59.99947 * 7 5 4 33 33 H 1.09004 * 109.46700 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46879 * 299.99926 * 7 5 4 35 35 H 1.08990 * 109.51248 * 185.70604 * 8 5 4 36 36 H 1.09001 * 109.42890 * 65.42741 * 8 5 4 37 37 H 1.09003 * 113.76727 * 41.05741 * 14 13 10 38 38 H 1.09000 * 113.76915 * 269.66644 * 14 13 10 39 39 H 0.96698 * 114.00098 * 171.44601 * 16 15 14 40 40 H 0.97007 * 119.99483 * 5.87247 * 20 19 17 41 41 H 1.08994 * 113.77423 * 90.33548 * 25 13 10 42 42 H 1.09010 * 113.76672 * 318.93394 * 25 13 10 43 43 H 1.09000 * 109.58595 * 66.43169 * 26 9 8 44 44 H 1.09005 * 109.58755 * 186.71228 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2661 6 1 3.9160 0.3388 -1.2540 7 6 4.0797 -1.3887 -2.5313 8 6 4.1055 -1.4217 -0.0332 9 7 3.5046 -0.8293 1.1696 10 16 4.4587 -0.2844 2.4085 11 8 3.6924 0.6865 3.1079 12 8 5.7327 -0.0087 1.8425 13 7 4.6755 -1.5505 3.4536 14 6 5.6702 -2.6342 3.5734 15 6 5.2920 -2.6746 5.0651 16 8 6.0932 -1.8216 5.8851 17 6 5.1609 -4.0694 5.6203 18 1 5.4061 -4.9213 5.0035 19 6 4.7281 -4.2580 6.9156 20 7 4.1744 -3.2640 7.5753 21 14 4.9278 -5.9254 7.7338 22 1 4.3861 -5.8670 9.1152 23 1 4.1874 -6.9506 6.9553 24 1 6.3680 -6.2842 7.7809 25 6 3.9515 -2.0485 4.6393 26 6 2.0413 -0.7239 1.2495 27 1 -0.3633 0.5125 0.8907 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3634 -1.0277 -0.0015 30 1 1.6967 -1.7573 -1.2354 31 1 1.6584 -0.2243 -2.1389 32 1 3.6969 -0.8690 -3.4095 33 1 5.1695 -1.3688 -2.5432 34 1 3.7354 -2.4228 -2.5423 35 1 5.1895 -1.3162 0.0100 36 1 3.8412 -2.4775 -0.0916 37 1 6.6951 -2.3122 3.3885 38 1 5.4022 -3.5388 3.0275 39 1 5.7787 -1.7430 6.7961 40 1 3.9929 -2.4244 7.1246 41 1 3.1787 -2.7811 4.4067 42 1 3.6041 -1.2588 5.3057 43 1 1.6052 -1.7217 1.2979 44 1 1.7637 -0.1603 2.1403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440075737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:23 Heat of formation + Delta-G solvation = -107.834629 kcal Electronic energy + Delta-G solvation = -26548.985683 eV Core-core repulsion = 22821.574848 eV Total energy + Delta-G solvation = -3727.410835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12395 -38.76130 -36.92415 -35.48585 -34.25651 -33.74058 -33.47045 -32.33877 -27.62280 -27.01401 -26.88403 -25.47866 -24.58564 -24.21725 -21.04317 -20.24471 -19.88391 -18.54247 -18.02590 -17.42564 -16.75647 -16.13869 -15.19464 -15.10234 -14.90797 -14.76448 -14.31050 -14.02129 -13.91250 -13.55253 -13.28785 -13.10954 -13.02616 -12.65147 -12.44082 -12.32885 -12.29862 -11.86921 -11.83623 -11.79580 -11.73507 -11.50771 -11.31014 -11.05583 -11.01588 -10.94622 -10.86829 -10.53752 -10.49527 -10.45744 -10.20073 -9.29468 -9.03432 -8.83812 -8.64812 -8.01645 -6.64734 -4.44141 0.86600 3.12783 3.31397 3.36135 3.53793 3.80417 4.34220 4.41238 4.43814 4.59944 4.69872 4.80421 4.87596 5.02814 5.13321 5.18954 5.22143 5.38371 5.40957 5.44481 5.52187 5.60866 5.65168 5.66857 5.77918 5.79674 5.81138 5.89320 5.91241 5.99615 5.99909 6.13493 6.18126 6.26370 6.27741 6.41748 6.45650 6.74358 6.78709 7.32545 7.71104 8.11622 8.48081 8.90776 9.26344 10.66624 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.003863 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.209932 B = 7245.841764 C = 7369.215672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.105 4.105 5 C -0.106 4.106 6 H 0.073 0.927 7 C -0.145 4.145 8 C 0.124 3.876 9 N -1.012 6.012 10 S 2.790 3.210 11 O -0.980 6.980 12 O -0.982 6.982 13 N -1.034 6.034 14 C 0.142 3.858 15 C 0.222 3.778 16 O -0.567 6.567 17 C -0.617 4.617 18 H 0.064 0.936 19 C 0.036 3.964 20 N -0.898 5.898 21 Si 1.067 2.933 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.284 1.284 25 C 0.098 3.902 26 C 0.124 3.876 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 2.054 -16.352 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.126 4.126 6 H 0.092 0.908 7 C -0.203 4.203 8 C -0.002 4.002 9 N -0.849 5.849 10 S 2.804 3.196 11 O -0.964 6.964 12 O -0.966 6.966 13 N -0.877 5.877 14 C 0.017 3.983 15 C 0.179 3.821 16 O -0.374 6.374 17 C -0.656 4.656 18 H 0.083 0.917 19 C -0.170 4.170 20 N -0.534 5.534 21 Si 0.894 3.106 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.028 4.028 26 C -0.002 4.002 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.224 0.776 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.401 2.415 -15.543 16.630 hybrid contribution -0.437 0.447 -1.193 1.347 sum -5.838 2.862 -16.736 17.954 Atomic orbital electron populations 1.21774 0.94451 1.02073 1.02024 1.21473 0.95775 1.00156 0.95147 0.90796 1.21606 0.94619 1.00796 0.97254 1.21400 0.95977 1.00564 0.94670 0.90816 1.21769 1.01324 1.00562 0.96620 1.21357 0.98268 0.96909 0.83622 1.58410 1.16337 1.78109 1.32090 1.01636 0.72728 0.73470 0.71799 1.93552 1.72336 1.57503 1.73043 1.93546 1.40778 1.83910 1.78367 1.60550 1.40278 1.44775 1.42054 1.22858 0.91476 0.87164 0.96796 1.20170 0.85686 0.88975 0.87300 1.86232 1.55577 1.69789 1.25788 1.22271 1.50317 0.91282 1.01692 0.91733 1.25968 0.91815 1.04786 0.94417 1.70924 1.37463 1.05119 1.39927 0.83588 0.76779 0.73905 0.76371 1.20611 1.21219 1.21049 1.23944 0.99306 0.96542 0.83048 1.21454 0.79091 1.00754 0.98876 0.92257 0.92449 0.92425 0.91696 0.91832 0.92433 0.92288 0.92439 0.89187 0.91595 0.90816 0.89731 0.77584 0.91840 0.90058 0.91528 0.91545 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.11 -1.11 2.87 -90.50 -0.26 -1.37 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -0.98 4.45 -26.69 -0.12 -1.09 16 5 C -0.11 -1.09 2.86 -90.72 -0.26 -1.35 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 8 C 0.12 1.54 5.73 -3.93 -0.02 1.52 16 9 N -1.01 -14.82 3.35 -113.76 -0.38 -15.20 16 10 S 2.79 52.95 6.69 -107.50 -0.72 52.23 16 11 O -0.98 -20.91 16.70 -57.17 -0.95 -21.86 16 12 O -0.98 -20.58 16.69 -57.17 -0.95 -21.54 16 13 N -1.03 -20.86 4.17 -118.67 -0.50 -21.35 16 14 C 0.14 2.93 8.36 -2.97 -0.02 2.91 16 15 C 0.22 5.27 1.08 -90.84 -0.10 5.17 16 16 O -0.57 -14.27 13.45 -35.23 -0.47 -14.74 16 17 C -0.62 -15.55 8.56 -34.44 -0.29 -15.84 16 18 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 19 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 20 N -0.90 -23.94 12.80 55.43 0.71 -23.23 16 21 Si 1.07 22.72 29.93 -169.99 -5.09 17.63 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.10 2.11 7.40 -2.97 -0.02 2.09 16 26 C 0.12 1.58 5.76 -3.71 -0.02 1.56 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.20 6.91 -51.93 -0.36 0.84 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 39 H 0.38 9.27 6.95 45.56 0.32 9.58 16 40 H 0.27 7.07 5.52 -40.82 -0.23 6.84 16 41 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 42 H 0.07 1.48 7.80 -51.92 -0.41 1.07 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -30.69 359.84 -10.04 -40.73 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.58 Total: 9.23 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.53 Total: -7.33 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.17 Total: -59.78 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.38 Total: -58.14 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.09 Total: 17.63 kcal Atomic # 16 Polarization: 52.95 SS G_CDS: -0.72 Total: 52.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.69 -10.04 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440075737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.104 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds