Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49735 * 2 1 4 4 C 1.53041 * 109.50081 * 120.06754 * 2 1 3 5 5 C 1.53034 * 109.53980 * 181.31866 * 4 2 1 6 6 H 1.09000 * 109.50236 * 178.65021 * 5 4 2 7 7 C 1.52998 * 109.50138 * 58.58479 * 5 4 2 8 8 C 1.53201 * 109.31167 * 298.63218 * 5 4 2 9 9 N 1.46922 * 108.77377 * 54.63644 * 8 5 4 10 10 S 1.65604 * 120.63180 * 126.41007 * 9 8 5 11 11 O 1.42092 * 106.40519 * 203.53738 * 10 9 8 12 12 O 1.42100 * 106.40211 * 336.46548 * 10 9 8 13 13 N 1.65600 * 107.21495 * 89.99728 * 10 9 8 14 14 C 1.47066 * 136.06135 * 269.63474 * 13 10 9 15 15 C 1.53760 * 87.88900 * 152.96077 * 14 13 10 16 16 O 1.42896 * 114.39414 * 272.67229 * 15 14 13 17 17 C 1.50705 * 114.08553 * 139.77974 * 15 14 13 18 18 H 1.08008 * 119.99801 * 266.55985 * 17 15 14 19 19 C 1.37869 * 120.00192 * 86.56054 * 17 15 14 20 20 N 1.31520 * 120.00022 * 179.97438 * 19 17 15 21 21 Si 1.86806 * 119.99899 * 0.02562 * 19 17 15 22 22 H 1.48496 * 109.47116 * 89.99943 * 21 19 17 23 23 H 1.48508 * 109.47098 * 209.99983 * 21 19 17 24 24 H 1.48499 * 109.47140 * 329.99514 * 21 19 17 25 25 C 1.47079 * 136.05575 * 89.99966 * 13 10 9 26 26 C 1.46923 * 118.73905 * 306.39226 * 9 8 5 27 27 H 1.09002 * 109.47153 * 299.93231 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.93403 * 1 2 3 30 30 H 1.09002 * 109.45546 * 301.33409 * 4 2 1 31 31 H 1.09000 * 109.45699 * 61.30828 * 4 2 1 32 32 H 1.09001 * 109.47438 * 60.00098 * 7 5 4 33 33 H 1.08998 * 109.47753 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47021 * 300.00260 * 7 5 4 35 35 H 1.09001 * 109.58194 * 174.42234 * 8 5 4 36 36 H 1.08993 * 109.58639 * 294.84760 * 8 5 4 37 37 H 1.08999 * 113.46659 * 267.69303 * 14 13 10 38 38 H 1.08996 * 113.47152 * 38.12988 * 14 13 10 39 39 H 0.96702 * 114.00082 * 273.58426 * 16 15 14 40 40 H 0.97003 * 119.99366 * 180.02562 * 20 19 17 41 41 H 1.08994 * 113.46695 * 321.86776 * 25 13 10 42 42 H 1.08995 * 113.46245 * 92.24765 * 25 13 10 43 43 H 1.08999 * 109.58678 * 293.82219 * 26 9 8 44 44 H 1.09005 * 109.58981 * 173.39688 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7228 1.2485 5 6 3.5708 -0.6946 1.2661 6 1 3.9335 -1.1886 2.1676 7 6 4.0552 0.7565 1.2490 8 6 4.1053 -1.4267 0.0310 9 7 3.5046 -0.8294 -1.1694 10 16 4.4587 -0.2856 -2.4090 11 8 3.6925 0.6849 -3.1090 12 8 5.7328 -0.0099 -1.8435 13 7 4.6749 -1.5526 -3.4531 14 6 5.6499 -2.6427 -3.6080 15 6 4.5389 -3.4640 -4.2830 16 8 3.7238 -4.2106 -3.3774 17 6 5.0028 -4.2661 -5.4716 18 1 4.9250 -3.8520 -6.4661 19 6 5.5265 -5.5284 -5.2895 20 7 5.9308 -6.2285 -6.3268 21 14 5.6604 -6.2448 -3.5695 22 1 4.4149 -6.9847 -3.2431 23 1 6.8180 -7.1731 -3.5086 24 1 5.8549 -5.1463 -2.5894 25 6 3.9800 -2.0792 -4.6377 26 6 2.0413 -0.7241 -1.2494 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5149 -0.8894 30 1 1.6582 -0.2239 2.1389 31 1 1.6969 -1.7570 1.2355 32 1 3.6724 1.2778 2.1265 33 1 5.1450 0.7761 1.2611 34 1 3.6933 1.2498 0.3469 35 1 5.1896 -1.3245 -0.0135 36 1 3.8376 -2.4817 0.0873 37 1 6.4744 -2.3959 -4.2768 38 1 5.9866 -3.0620 -2.6599 39 1 4.0787 -5.0825 -3.1561 40 1 6.2989 -7.1168 -6.1986 41 1 2.8941 -2.0182 -4.5667 42 1 4.3637 -1.6829 -5.5777 43 1 1.6053 -1.7219 -1.2976 44 1 1.7637 -0.1584 -2.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440075738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -80.963089 kcal Electronic energy + Delta-G solvation = -27119.009830 eV Core-core repulsion = 23392.764233 eV Total energy + Delta-G solvation = -3726.245597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27683 -39.03245 -36.98243 -35.55747 -34.57594 -33.52060 -33.12615 -32.53556 -28.18371 -27.13487 -26.79944 -25.41496 -24.75293 -24.40911 -21.75464 -20.02016 -19.36273 -18.38008 -17.86099 -17.24054 -16.85954 -16.38710 -15.94092 -15.17783 -14.85752 -14.55977 -14.28192 -14.12377 -14.04538 -13.79094 -13.50883 -13.09197 -12.98705 -12.60644 -12.42893 -12.35249 -12.28271 -12.06063 -11.92824 -11.84168 -11.76746 -11.70632 -11.45415 -11.14283 -11.01270 -10.97843 -10.83009 -10.52815 -10.51867 -10.25059 -10.10453 -9.38228 -9.14914 -8.88406 -8.71579 -8.36645 -6.41930 -4.46825 0.82416 2.97364 3.02181 3.13098 3.15844 3.76280 4.02733 4.39880 4.49868 4.64764 4.68454 4.73061 4.90356 5.02490 5.06680 5.17530 5.26158 5.45736 5.50585 5.52613 5.59290 5.66492 5.67611 5.75219 5.80473 5.87135 5.89393 5.91318 5.94151 6.04215 6.06033 6.09060 6.19274 6.30704 6.33298 6.34280 6.41874 6.62940 6.79947 7.07197 7.36103 8.01131 8.51511 8.62418 9.16106 10.70437 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.004758 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.491407 B = 5883.582416 C = 6156.465926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.106 4.106 5 C -0.102 4.102 6 H 0.080 0.920 7 C -0.150 4.150 8 C 0.124 3.876 9 N -1.000 6.000 10 S 2.805 3.195 11 O -0.983 6.983 12 O -0.981 6.981 13 N -1.050 6.050 14 C 0.096 3.904 15 C 0.195 3.805 16 O -0.550 6.550 17 C -0.533 4.533 18 H 0.092 0.908 19 C 0.079 3.921 20 N -0.877 5.877 21 Si 0.859 3.141 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.257 1.257 25 C 0.149 3.851 26 C 0.126 3.874 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.350 0.650 40 H 0.270 0.730 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 8.580 14.436 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.122 4.122 6 H 0.098 0.902 7 C -0.207 4.207 8 C -0.002 4.002 9 N -0.839 5.839 10 S 2.818 3.182 11 O -0.968 6.968 12 O -0.966 6.966 13 N -0.892 5.892 14 C -0.030 4.030 15 C 0.153 3.847 16 O -0.362 6.362 17 C -0.571 4.571 18 H 0.110 0.890 19 C -0.126 4.126 20 N -0.513 5.513 21 Si 0.688 3.312 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.182 1.182 25 C 0.024 3.976 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.203 0.797 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.886 10.020 14.377 18.828 hybrid contribution 0.395 -1.354 0.979 1.717 sum -6.491 8.667 15.356 18.789 Atomic orbital electron populations 1.21777 0.94594 1.02088 1.01876 1.21517 0.95607 1.00358 0.95193 0.90479 1.21561 0.94667 1.00761 0.97326 1.21433 0.96020 0.96905 0.97885 0.90180 1.21884 1.01382 0.95822 1.01625 1.21441 0.98158 0.96896 0.83665 1.58082 1.16329 1.77794 1.31666 1.01027 0.72784 0.72298 0.72141 1.93552 1.72602 1.57386 1.73224 1.93556 1.40852 1.83630 1.78537 1.60168 1.40820 1.46748 1.41473 1.23882 0.94419 0.84587 1.00148 1.20454 0.87400 0.89120 0.87755 1.86425 1.51513 1.31167 1.67052 1.21238 1.41787 1.00520 0.93586 0.88978 1.25007 0.94147 0.96704 0.96737 1.69859 1.39978 1.11800 1.29623 0.87328 0.78452 0.80153 0.85267 1.19402 1.21087 1.18207 1.22610 0.96846 0.91410 0.86716 1.21458 0.78877 1.01009 0.98641 0.92545 0.92408 0.92349 0.91914 0.91662 0.92708 0.92285 0.92639 0.89269 0.91303 0.89090 0.92229 0.79726 0.91924 0.91426 0.88945 0.91156 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.20 37.16 0.34 -0.92 16 2 C -0.11 -1.12 2.53 -90.50 -0.23 -1.35 16 3 H 0.08 0.86 6.34 -51.93 -0.33 0.53 16 4 C -0.11 -1.01 4.71 -26.69 -0.13 -1.13 16 5 C -0.10 -1.08 3.21 -90.50 -0.29 -1.37 16 6 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.15 -1.65 8.70 37.16 0.32 -1.33 16 8 C 0.12 1.62 5.87 -3.71 -0.02 1.60 16 9 N -1.00 -14.84 2.78 -113.52 -0.32 -15.15 16 10 S 2.81 50.92 6.72 -107.50 -0.72 50.20 16 11 O -0.98 -19.41 16.73 -57.17 -0.96 -20.36 16 12 O -0.98 -19.50 16.73 -57.17 -0.96 -20.46 16 13 N -1.05 -20.31 4.29 -124.99 -0.54 -20.84 16 14 C 0.10 1.96 7.60 -8.36 -0.06 1.90 16 15 C 0.20 4.33 1.10 -91.12 -0.10 4.23 16 16 O -0.55 -12.20 13.33 -35.23 -0.47 -12.67 16 17 C -0.53 -13.55 9.27 -34.44 -0.32 -13.87 16 18 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.88 -24.37 13.96 55.43 0.77 -23.59 16 21 Si 0.86 18.77 24.42 -169.99 -4.15 14.62 16 22 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.26 -5.28 5.50 56.52 0.31 -4.97 16 25 C 0.15 2.94 8.14 -8.50 -0.07 2.87 16 26 C 0.13 1.63 5.76 -3.71 -0.02 1.61 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 35 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16 38 H 0.06 1.18 7.15 -51.93 -0.37 0.81 16 39 H 0.35 7.57 3.16 45.56 0.14 7.71 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.21 6.92 -51.93 -0.36 0.85 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -30.00 348.77 -9.48 -39.48 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.73 Total: 9.31 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.67 Total: -5.80 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.08 Total: -59.59 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -2.38 Total: -53.48 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.15 Total: 14.62 kcal Atomic # 16 Polarization: 50.92 SS G_CDS: -0.72 Total: 50.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.00 -9.48 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440075738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.480 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds