Wall clock time and date at job start Tue Mar 31 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99649 * 2 1 4 4 H 1.08999 * 110.43440 * 177.46088 * 3 2 1 5 5 C 1.54631 * 110.48513 * 299.99785 * 3 2 1 6 6 C 1.54485 * 101.76414 * 93.88200 * 5 3 2 7 7 N 1.46762 * 105.47096 * 25.41781 * 6 5 3 8 8 C 1.46494 * 124.34803 * 162.98693 * 7 6 5 9 9 C 1.34421 * 111.30113 * 342.97986 * 7 6 5 10 10 O 1.21286 * 124.94264 * 180.44548 * 9 7 6 11 11 S 1.65596 * 120.00494 * 179.97438 * 2 1 3 12 12 O 1.42102 * 104.27570 * 333.93070 * 11 2 1 13 13 O 1.42100 * 104.28084 * 206.07014 * 11 2 1 14 14 C 1.81407 * 104.44839 * 89.99720 * 11 2 1 15 15 C 1.53001 * 109.47224 * 179.97438 * 14 11 2 16 16 C 1.53005 * 109.46651 * 60.00479 * 15 14 11 17 17 C 1.52999 * 109.47144 * 300.00680 * 15 14 11 18 18 C 1.50696 * 109.47192 * 180.02562 * 15 14 11 19 19 H 1.08009 * 119.99792 * 358.10440 * 18 15 14 20 20 C 1.37878 * 120.00033 * 178.10217 * 18 15 14 21 21 N 1.31510 * 119.99946 * 2.57037 * 20 18 15 22 22 Si 1.86803 * 119.99862 * 182.57172 * 20 18 15 23 23 H 1.48503 * 109.46851 * 265.00807 * 22 20 18 24 24 H 1.48503 * 109.46832 * 145.00794 * 22 20 18 25 25 H 1.48501 * 109.47101 * 25.00901 * 22 20 18 26 26 H 1.08994 * 109.46876 * 269.99792 * 1 2 3 27 27 H 1.08995 * 109.47466 * 30.00125 * 1 2 3 28 28 H 1.08999 * 109.46795 * 150.00227 * 1 2 3 29 29 H 1.08998 * 110.97154 * 211.99973 * 5 3 2 30 30 H 1.09000 * 110.97246 * 335.76336 * 5 3 2 31 31 H 1.08995 * 110.24240 * 144.41775 * 6 5 3 32 32 H 1.08998 * 110.24446 * 266.41748 * 6 5 3 33 33 H 1.08997 * 109.47408 * 89.99733 * 8 7 6 34 34 H 1.09003 * 109.47228 * 209.99906 * 8 7 6 35 35 H 1.09000 * 109.46982 * 329.99230 * 8 7 6 36 36 H 1.09006 * 109.46731 * 60.00604 * 14 11 2 37 37 H 1.08995 * 109.47164 * 300.00637 * 14 11 2 38 38 H 1.09000 * 109.46810 * 173.32383 * 16 15 14 39 39 H 1.08999 * 109.47030 * 293.32531 * 16 15 14 40 40 H 1.08998 * 109.47195 * 53.32668 * 16 15 14 41 41 H 1.09001 * 109.46944 * 299.99576 * 17 15 14 42 42 H 1.08996 * 109.47438 * 59.99651 * 17 15 14 43 43 H 1.09003 * 109.46583 * 179.97438 * 17 15 14 44 44 H 0.96997 * 119.99969 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2715 1.0882 0.0452 5 6 1.8408 2.0995 -1.2545 6 6 0.6999 2.9962 -0.7246 7 7 0.9215 3.0974 0.7227 8 6 0.3132 4.1153 1.5828 9 6 1.7543 2.1360 1.1576 10 8 2.0996 1.9854 2.3104 11 16 2.2931 -1.4340 0.0006 12 8 1.3971 -2.3558 0.6063 13 8 3.5396 -1.1187 0.6057 14 6 2.5194 -1.8268 -1.7559 15 6 3.2821 -3.1464 -1.8893 16 6 2.4864 -4.2658 -1.2148 17 6 4.6496 -3.0155 -1.2156 18 6 3.4707 -3.4724 -3.3484 19 1 3.0584 -2.8210 -4.1049 20 6 4.1694 -4.6022 -3.7178 21 7 4.6278 -5.4221 -2.7973 22 14 4.4649 -4.9683 -5.5256 23 1 3.4107 -5.8884 -6.0230 24 1 5.7962 -5.6054 -5.6904 25 1 4.4228 -3.7021 -6.3003 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.6904 2.7003 -1.5790 30 1 1.4889 1.4565 -2.0612 31 1 0.7515 3.9832 -1.1840 32 1 -0.2669 2.5353 -0.9268 33 1 -0.6401 3.7478 1.9624 34 1 0.9789 4.3296 2.4190 35 1 0.1483 5.0261 1.0072 36 1 3.0867 -1.0296 -2.2363 37 1 1.5452 -1.9196 -2.2359 38 1 2.9685 -5.2234 -1.4112 39 1 2.4518 -4.0900 -0.1396 40 1 1.4719 -4.2813 -1.6132 41 1 5.2164 -2.2181 -1.6961 42 1 4.5136 -2.7795 -0.1602 43 1 5.1927 -3.9558 -1.3103 44 1 5.1196 -6.2167 -3.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451222809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:16 Heat of formation + Delta-G solvation = -87.920583 kcal Electronic energy + Delta-G solvation = -26780.311955 eV Core-core repulsion = 23053.764658 eV Total energy + Delta-G solvation = -3726.547297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79727 -36.86141 -36.62401 -36.30121 -35.62724 -35.21094 -31.78418 -31.67192 -28.19199 -27.10788 -26.68669 -25.73346 -25.26968 -25.04277 -22.05189 -19.80386 -19.45526 -18.75057 -17.62987 -17.12696 -16.57323 -16.01960 -15.71484 -15.55475 -15.09957 -14.77564 -14.43557 -14.15503 -13.86247 -13.35608 -13.17122 -13.07508 -12.97752 -12.90271 -12.61794 -12.53522 -12.52387 -12.08070 -12.02484 -11.67558 -11.36754 -11.25196 -11.10434 -11.07412 -10.96036 -10.71944 -10.39291 -10.32174 -10.26857 -10.07674 -9.67805 -9.59381 -9.02505 -8.91464 -8.66758 -8.41125 -6.05487 -4.18161 0.71954 2.33653 2.74714 3.11854 3.23739 3.31698 3.33279 4.08340 4.13942 4.32469 4.43554 4.53236 4.57236 4.69646 4.87398 4.98103 5.01820 5.12763 5.19470 5.32792 5.42657 5.43522 5.58440 5.60439 5.62262 5.67297 5.77541 5.93087 6.24554 6.34184 6.49382 6.66418 6.77381 6.82968 6.89836 7.03537 7.29149 7.46907 7.65506 7.97055 8.00596 8.07414 8.31123 8.80400 9.47426 10.95524 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.003898 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.019533 B = 7182.292703 C = 7609.528099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.993 5.993 3 C 0.118 3.882 4 H 0.137 0.863 5 C -0.152 4.152 6 C 0.101 3.899 7 N -0.625 5.625 8 C 0.097 3.903 9 C 0.515 3.485 10 O -0.513 6.513 11 S 2.587 3.413 12 O -0.955 6.955 13 O -0.954 6.954 14 C -0.579 4.579 15 C 0.081 3.919 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.501 4.501 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.882 5.882 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.028 0.972 43 H 0.096 0.904 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 17.810 0.963 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.829 5.829 3 C 0.008 3.992 4 H 0.154 0.846 5 C -0.191 4.191 6 C -0.022 4.022 7 N -0.361 5.361 8 C -0.045 4.045 9 C 0.300 3.700 10 O -0.386 6.386 11 S 2.687 3.313 12 O -0.946 6.946 13 O -0.944 6.944 14 C -0.713 4.713 15 C 0.079 3.921 16 C -0.219 4.219 17 C -0.223 4.223 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.520 5.520 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.012 17.176 2.499 19.556 hybrid contribution -0.118 0.083 -1.707 1.713 sum -9.130 17.259 0.792 19.541 Atomic orbital electron populations 1.21589 0.78750 1.03210 1.02363 1.57782 1.14988 1.19914 1.90205 1.21503 0.99546 0.84495 0.93691 0.84560 1.23134 0.99381 0.98728 0.97870 1.22223 0.99210 1.00958 0.79807 1.48165 1.47526 1.31160 1.09279 1.21536 0.98228 0.90094 0.94634 1.21065 0.78273 0.80914 0.89765 1.90739 1.57198 1.70950 1.19730 1.06068 0.73703 0.72054 0.79507 1.93552 1.64999 1.60844 1.75161 1.93552 1.43213 1.82437 1.75219 1.30583 1.09890 1.10357 1.20423 1.17951 0.90847 0.85375 0.97916 1.22243 0.98982 1.04305 0.96373 1.22280 0.99508 1.03922 0.96543 1.20934 1.34840 1.08490 0.89817 0.92260 1.24946 0.95390 0.95887 0.97557 1.69799 1.37005 1.13026 1.32217 0.86523 0.77696 0.78430 0.84993 1.20728 1.21081 1.19902 0.92717 0.90962 0.90261 0.88468 0.87778 0.90057 0.90612 0.92609 0.90681 0.91028 0.86255 0.86350 0.88447 0.95663 0.94657 0.94401 0.95323 0.88546 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 9.42 59.85 0.56 1.57 16 2 N -0.99 -14.38 3.06 -114.62 -0.35 -14.73 16 3 C 0.12 1.53 3.39 -67.94 -0.23 1.30 16 4 H 0.14 1.89 6.91 -51.93 -0.36 1.53 16 5 C -0.15 -1.20 6.44 -25.09 -0.16 -1.36 16 6 C 0.10 0.67 6.58 -3.12 -0.02 0.65 16 7 N -0.62 -6.17 3.33 -180.30 -0.60 -6.77 16 8 C 0.10 0.73 10.96 59.84 0.66 1.38 16 9 C 0.52 7.34 7.03 -10.86 -0.08 7.27 16 10 O -0.51 -9.63 17.60 5.55 0.10 -9.53 16 11 S 2.59 49.13 4.41 -107.50 -0.47 48.66 16 12 O -0.96 -20.55 14.85 -57.54 -0.85 -21.41 16 13 O -0.95 -20.73 14.19 -57.54 -0.82 -21.55 16 14 C -0.58 -10.83 5.11 37.16 0.19 -10.64 16 15 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 16 C -0.16 -3.94 7.61 37.16 0.28 -3.66 16 17 C -0.16 -4.03 7.75 37.16 0.29 -3.74 16 18 C -0.50 -12.83 8.01 -34.44 -0.28 -13.11 16 19 H 0.06 1.46 7.75 -52.48 -0.41 1.06 16 20 C 0.06 1.67 5.13 -17.82 -0.09 1.58 16 21 N -0.88 -23.84 9.33 55.43 0.52 -23.32 16 22 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.60 4.77 -51.93 -0.25 0.35 16 28 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.42 6.19 -51.93 -0.32 0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 37 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 38 H 0.10 2.58 5.98 -51.93 -0.31 2.27 16 39 H 0.02 0.59 5.96 -51.93 -0.31 0.28 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 43 H 0.10 2.55 6.02 -51.93 -0.31 2.24 16 44 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -35.04 350.00 -7.91 -42.95 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.73 Total: 2.14 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 1.04 Total: -16.91 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.43 Total: -44.82 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -1.57 Total: -52.49 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.47 Total: 48.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.04 -7.91 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.972 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds